BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0584.0031.p (235 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0Z5N2.1 C0Z5N2_BREBN NADPH dehydrogenase EC=1.6.99.1 296 1e-78 C3B986.1 C3B986_BACMY Putative uncharacterized protein 282 2e-74 C3ARX9.1 C3ARX9_BACMY Putative uncharacterized protein 282 2e-74 C2W7H3.1 C2W7H3_BACCE Putative uncharacterized protein 280 1e-73 A7Z2F8.1 A7Z2F8_BACA2 YfkO EC=1.-.-.- 279 2e-73 >C0Z5N2.1 C0Z5N2_BREBN NADPH dehydrogenase EC=1.6.99.1 Length = 220 Score = 296 bits (758), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 131/208 (62%), Positives = 169/208 (81%) Query: 28 FRHATKEFDSSRKISGEDFQFILETGRLSPSSFGFEPWKFVVVQNPEIREKLRQFAWGAQ 87 FRHA KEFD+++KI+ EDF FI+ET RLSPSSFGFEPW F+V+Q P +REKL AWGAQ Sbjct: 12 FRHACKEFDAAKKITTEDFDFIMETARLSPSSFGFEPWNFLVLQEPTLREKLLPVAWGAQ 71 Query: 88 KQLPTASHFVLILSRLPKDLAAGSDYIQGIMKDVQNLPPEVAEGKRKMYNTFLTTDFGLT 147 KQLPTASHFV++L+R +++AA S+YIQ +MKD Q LP V + K Y+ FL DF + Sbjct: 72 KQLPTASHFVIVLARTKQEMAADSEYIQHMMKDTQELPENVVQQKGAAYDHFLKNDFSVF 131 Query: 148 GNDRALFEWGARQTYLALGNMMTAAAQIGIDSCPIEGFDKPKIEEILAAEGIMDPEHFGI 207 ++R +FEW +RQTY+ALGNMMT+AA IGIDSCPIEGF K K+E+ILAAEG++D E FG+ Sbjct: 132 DDERVMFEWASRQTYIALGNMMTSAAMIGIDSCPIEGFAKEKVEDILAAEGLLDRERFGV 191 Query: 208 ACMVAFGYRLNEPRGKTRRSAEQVVQWV 235 ACMVAFGYR NEPR KTR++ E++++++ Sbjct: 192 ACMVAFGYRKNEPRAKTRQAKEEIIRFI 219 >C3B986.1 C3B986_BACMY Putative uncharacterized protein Length = 223 Score = 282 bits (721), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 132/209 (63%), Positives = 160/209 (76%), Gaps = 1/209 (0%) Query: 28 FRHATKEFDSSRKISGEDFQFILETGRLSPSSFGFEPWKFVVVQNPEIREKLRQFAWGAQ 87 FRHA KEFD ++K+S EDF FILETGRLSPSSFGFEPWKFVV+QN +IR KL AWGAQ Sbjct: 14 FRHACKEFDVNKKVSDEDFHFILETGRLSPSSFGFEPWKFVVIQNQDIRNKLLPVAWGAQ 73 Query: 88 KQLPTASHFVLILSRLPKDLAAGSDYIQGIMKDVQNLPPEVAEGKRKMYNTFLTTDFGLT 147 KQLPTASHFV+IL R +D+ S YI MK++Q LP EV KR Y F TDF L Sbjct: 74 KQLPTASHFVVILVRKKEDMIYDSSYISNFMKNIQQLPEEVVTMKRGFYKAFQETDFQLL 133 Query: 148 GNDRALFEWGARQTYLALGNMMTAAAQIGIDSCPIEGFDKPKIEEILAAEGIMDPEHFGI 207 +DRA+F+W ++QTY+ALGNMMTAAAQIGIDSCPIEGF + K+E IL EGI+ + FG+ Sbjct: 134 ESDRAMFDWASKQTYIALGNMMTAAAQIGIDSCPIEGFHQEKVEAILKEEGIVSGDTFGV 193 Query: 208 ACMVAFGYRLNEP-RGKTRRSAEQVVQWV 235 + +VAFGYR EP R KTR++ + VV+W+ Sbjct: 194 SVLVAFGYRAEEPKRDKTRQTMDMVVEWI 222 >C3ARX9.1 C3ARX9_BACMY Putative uncharacterized protein Length = 223 Score = 282 bits (721), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 132/209 (63%), Positives = 160/209 (76%), Gaps = 1/209 (0%) Query: 28 FRHATKEFDSSRKISGEDFQFILETGRLSPSSFGFEPWKFVVVQNPEIREKLRQFAWGAQ 87 FRHA KEFD ++K+S EDF FILETGRLSPSSFGFEPWKFVV+QN +IR KL AWGAQ Sbjct: 14 FRHACKEFDVNKKVSDEDFHFILETGRLSPSSFGFEPWKFVVIQNQDIRNKLLPVAWGAQ 73 Query: 88 KQLPTASHFVLILSRLPKDLAAGSDYIQGIMKDVQNLPPEVAEGKRKMYNTFLTTDFGLT 147 KQLPTASHFV+IL R +D+ S YI MK++Q LP EV KR Y F TDF L Sbjct: 74 KQLPTASHFVVILVRKKEDMIYDSSYISNFMKNIQQLPEEVVTMKRGFYKAFQETDFQLL 133 Query: 148 GNDRALFEWGARQTYLALGNMMTAAAQIGIDSCPIEGFDKPKIEEILAAEGIMDPEHFGI 207 +DRA+F+W ++QTY+ALGNMMTAAAQIGIDSCPIEGF + K+E IL EGI+ + FG+ Sbjct: 134 ESDRAMFDWASKQTYIALGNMMTAAAQIGIDSCPIEGFHQEKVEAILKEEGIVSGDTFGV 193 Query: 208 ACMVAFGYRLNEP-RGKTRRSAEQVVQWV 235 + +VAFGYR EP R KTR++ + VV+W+ Sbjct: 194 SVLVAFGYRAEEPKRDKTRQTMDMVVEWI 222 >C2W7H3.1 C2W7H3_BACCE Putative uncharacterized protein Length = 223 Score = 280 bits (715), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 129/209 (61%), Positives = 161/209 (77%), Gaps = 1/209 (0%) Query: 28 FRHATKEFDSSRKISGEDFQFILETGRLSPSSFGFEPWKFVVVQNPEIREKLRQFAWGAQ 87 FRHA KEFD ++KIS EDF FILETGRLSPSSFGFEPWKFVV+QN +IR KL AWGAQ Sbjct: 14 FRHACKEFDVNKKISDEDFHFILETGRLSPSSFGFEPWKFVVIQNQDIRNKLLPVAWGAQ 73 Query: 88 KQLPTASHFVLILSRLPKDLAAGSDYIQGIMKDVQNLPPEVAEGKRKMYNTFLTTDFGLT 147 KQLPTASHFV+IL+R +++ S YI M+++Q LP EV KR Y F DF L Sbjct: 74 KQLPTASHFVVILARKKEEMIYNSSYISNFMQNIQQLPEEVITMKRGFYKEFQENDFQLL 133 Query: 148 GNDRALFEWGARQTYLALGNMMTAAAQIGIDSCPIEGFDKPKIEEILAAEGIMDPEHFGI 207 +DRA+F+W ++QTY+ALGNMMTAAAQIGIDSCPIEGF + K++ IL EGI+ + FG+ Sbjct: 134 ESDRAMFDWASKQTYIALGNMMTAAAQIGIDSCPIEGFQQEKVDAILKEEGIISDDTFGV 193 Query: 208 ACMVAFGYRLNEP-RGKTRRSAEQVVQWV 235 + +VAFGYRL EP R KTR++ + +V+W+ Sbjct: 194 SVLVAFGYRLEEPKRDKTRQTMDMIVEWI 222 >A7Z2F8.1 A7Z2F8_BACA2 YfkO EC=1.-.-.- Length = 221 Score = 279 bits (713), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 127/208 (61%), Positives = 161/208 (77%) Query: 28 FRHATKEFDSSRKISGEDFQFILETGRLSPSSFGFEPWKFVVVQNPEIREKLRQFAWGAQ 87 FRHATKEFD +KIS DF+FILETGRLSPSS G EPWKFVVVQNPE+REKLR+F WGAQ Sbjct: 14 FRHATKEFDPEKKISESDFEFILETGRLSPSSLGLEPWKFVVVQNPELREKLREFTWGAQ 73 Query: 88 KQLPTASHFVLILSRLPKDLAAGSDYIQGIMKDVQNLPPEVAEGKRKMYNTFLTTDFGLT 147 KQLPTASHFVL+L+R KD+ +DY++ +++V+ +P ++ EG F DF L Sbjct: 74 KQLPTASHFVLLLARTAKDIRFDADYVKNHLREVKKMPEDMYEGYISKTEDFQKNDFNLL 133 Query: 148 GNDRALFEWGARQTYLALGNMMTAAAQIGIDSCPIEGFDKPKIEEILAAEGIMDPEHFGI 207 +DRALF+W ++QTY+ALGNMMTAAAQIGIDSCP+EGF+ +I IL EG+++ F I Sbjct: 134 ESDRALFDWASKQTYIALGNMMTAAAQIGIDSCPVEGFNYKEIHRILEEEGLLENGSFDI 193 Query: 208 ACMVAFGYRLNEPRGKTRRSAEQVVQWV 235 + M AFGYR+ EPR KTR +++ VV+WV Sbjct: 194 SVMAAFGYRVREPRPKTRSASKDVVKWV 221 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.137 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,312,754,940 Number of extensions: 52104313 Number of successful extensions: 102830 Number of sequences better than 1.0e-05: 1080 Number of HSP's gapped: 101768 Number of HSP's successfully gapped: 1080 Length of query: 235 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 104 Effective length of database: 1,826,543,238 Effective search space: 189960496752 Effective search space used: 189960496752 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)