BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0584.0030.p
         (132 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q9KEW2.1 Q9KEW2_BACHD Cinnamoyl ester hydrolase                       158   1e-37
P96673.2 YDEP_BACSU Uncharacterized HTH-type transcriptional reg...   157   2e-37
P37486.1 YYBR_BACSU Uncharacterized HTH-type transcriptional reg...   156   5e-37
B1HYM5.1 B1HYM5_LYSSC Putative HTH-type transcriptional regulator     153   5e-36
A3I669.1 A3I669_9BACI Putative uncharacterized protein                153   6e-36

>Q9KEW2.1 Q9KEW2_BACHD Cinnamoyl ester hydrolase
          Length = 118

 Score =  158 bits (400), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 79/126 (62%), Positives = 98/126 (77%), Gaps = 10/126 (7%)

Query: 1   MRDRKGGFGNSPGCDQAACPVEFTLDXXXXXXXGGKWKGVLLYHMMEEKKRFSEFRRICP 60
           MR+RK G+G S GC     PVE TLD       GGKWKGV+LY+++EEK+RF+E RR+ P
Sbjct: 1   MRNRKSGYGCSEGC-----PVEATLDVI-----GGKWKGVILYYLLEEKRRFNELRRLMP 50

Query: 61  GITQRMLTLQLRELEEDGVVHREVYQQVPPKVEYSLTEFGRTLIPIIRLMRDWGVEYQTK 120
           GITQR+L+LQLRELE+DG+VHREV+ +VPP+VEYS+TEFGRTL PII  MRDWG EY+T+
Sbjct: 51  GITQRILSLQLRELEKDGIVHREVFPEVPPRVEYSITEFGRTLEPIINQMRDWGEEYKTR 110

Query: 121 QHSVES 126
               E 
Sbjct: 111 IQEKED 116


>P96673.2 YDEP_BACSU Uncharacterized HTH-type transcriptional regulator ydeP
          Length = 128

 Score =  157 bits (398), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 79/127 (62%), Positives = 97/127 (76%), Gaps = 6/127 (4%)

Query: 1   MRDRKGGFGNSPGCDQAACPVEFTLDXXXXXXXGGKWKGVLLYHMMEEKKRFSEFRRICP 60
           MR+RK G   S   D   CPVE TLD       GGKWKG+LLYH+++ KKRF+EFR++ P
Sbjct: 1   MRNRKLGIDYSSD-DFEGCPVETTLDII-----GGKWKGILLYHLIDGKKRFNEFRKLYP 54

Query: 61  GITQRMLTLQLRELEEDGVVHREVYQQVPPKVEYSLTEFGRTLIPIIRLMRDWGVEYQTK 120
            ITQRMLTLQLRELE DGV+HREVY+QVPPKVEYSLTEFGRTL P+I  M+DWG +Y+ +
Sbjct: 55  KITQRMLTLQLRELERDGVIHREVYKQVPPKVEYSLTEFGRTLEPVILHMKDWGEKYKDR 114

Query: 121 QHSVESS 127
              +E++
Sbjct: 115 IDKLEAA 121


>P37486.1 YYBR_BACSU Uncharacterized HTH-type transcriptional regulator yybR
          Length = 125

 Score =  156 bits (395), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 77/114 (67%), Positives = 88/114 (77%), Gaps = 10/114 (8%)

Query: 1   MRDRKGGFGNSPGCDQAACPVEFTLDXXXXXXXGGKWKGVLLYHMMEEKKRFSEFRRICP 60
           M ++K  + N  GC     PVEFTLD       GGKWKG+L YHM++ KKRF+EFRRICP
Sbjct: 1   MSEKKNIYPNKEGC-----PVEFTLDVI-----GGKWKGILFYHMIDGKKRFNEFRRICP 50

Query: 61  GITQRMLTLQLRELEEDGVVHREVYQQVPPKVEYSLTEFGRTLIPIIRLMRDWG 114
            ITQRMLTLQLRELE DG+VHREVY QVPPKVEYSLTEFGRTL PI+  M++WG
Sbjct: 51  SITQRMLTLQLRELEADGIVHREVYHQVPPKVEYSLTEFGRTLEPIVLQMKEWG 104


>B1HYM5.1 B1HYM5_LYSSC Putative HTH-type transcriptional regulator
          Length = 116

 Score =  153 bits (386), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 72/107 (67%), Positives = 86/107 (80%), Gaps = 5/107 (4%)

Query: 15  DQAACPVEFTLDXXXXXXXGGKWKGVLLYHMMEEKKRFSEFRRICPGITQRMLTLQLREL 74
           D   CPVE TL        GGKWKGV+LYH+M   KRF+EFRR+ P ITQRMLTLQLREL
Sbjct: 15  DAYGCPVEATL-----AVIGGKWKGVILYHLMSGTKRFNEFRRLMPDITQRMLTLQLREL 69

Query: 75  EEDGVVHREVYQQVPPKVEYSLTEFGRTLIPIIRLMRDWGVEYQTKQ 121
           E+DG++HRE++++VPPKVEYSLTEFGRTL PII+LMRDWG +Y  K+
Sbjct: 70  EKDGIIHREIFKEVPPKVEYSLTEFGRTLEPIIKLMRDWGEQYNLKK 116


>A3I669.1 A3I669_9BACI Putative uncharacterized protein
          Length = 116

 Score =  153 bits (386), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 72/107 (67%), Positives = 86/107 (80%), Gaps = 5/107 (4%)

Query: 15  DQAACPVEFTLDXXXXXXXGGKWKGVLLYHMMEEKKRFSEFRRICPGITQRMLTLQLREL 74
           D   CPVE TL        GGKWKGV+LYH+M   KRF+EFRR+ P ITQRMLTLQLREL
Sbjct: 15  DAYGCPVEATL-----AVIGGKWKGVILYHLMSGTKRFNEFRRLMPDITQRMLTLQLREL 69

Query: 75  EEDGVVHREVYQQVPPKVEYSLTEFGRTLIPIIRLMRDWGVEYQTKQ 121
           E+DG++HRE++++VPPKVEYSLTEFGRTL PII+LMRDWG +Y  K+
Sbjct: 70  EKDGIIHREIFKEVPPKVEYSLTEFGRTLEPIIKLMRDWGEQYNLKK 116


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.321    0.139    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 784,089,779
Number of extensions: 28863083
Number of successful extensions: 54273
Number of sequences better than 1.0e-05: 2468
Number of HSP's gapped: 54130
Number of HSP's successfully gapped: 2469
Length of query: 132
Length of database: 3,060,696,203
Length adjustment: 97
Effective length of query: 35
Effective length of database: 2,146,857,748
Effective search space: 75140021180
Effective search space used: 75140021180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 125 (52.8 bits)