BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0584.0025.p (168 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A2TP97.1 A2TP97_9FLAO Putative uncharacterized protein 77 6e-13 A4CLC3.1 A4CLC3_9FLAO Putative uncharacterized protein 67 6e-10 A6CEE8.1 A6CEE8_9PLAN Putative uncharacterized protein 66 1e-09 B1DE28.1 B1DE28_9BACL Putative uncharacterized protein 64 6e-09 C1Z166.1 C1Z166_PEDHE Putative uncharacterized protein 57 5e-07 >A2TP97.1 A2TP97_9FLAO Putative uncharacterized protein Length = 171 Score = 76.6 bits (187), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 38/144 (26%), Positives = 70/144 (48%), Gaps = 8/144 (5%) Query: 11 RLDQSLGYLELAAGGLTEDQIWFRPRTRMNAIGNLCLHLAGNEYQHLACAVGGRPAERDR 70 RL++++ + +A + E+++W + +N +GN LH+ GN Q++ +GG P ER+R Sbjct: 16 RLEENVRMISIALSKVVEEELWTKQNQSLNTLGNQLLHICGNMTQYIVSGLGGNPDERNR 75 Query: 71 PSEFLTRGGFTPXXXXXXXXXXXXXXXAVVNGLTEKDLERVVTVHYPENSEMDSYSWSIQ 130 EF T GFT +++ T ++L + ++ + S Sbjct: 76 EEEFSTEDGFTKDELLQRLLLTVQTATTIIDDATPENLLK--------KRKVQGFDLSGI 127 Query: 131 KILIGTAEHYAYHTGQIVYLAKWM 154 I++ EH++YHTGQI K + Sbjct: 128 GIVLHAVEHFSYHTGQIAMQVKLV 151 >A4CLC3.1 A4CLC3_9FLAO Putative uncharacterized protein Length = 167 Score = 67.0 bits (162), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 40/142 (28%), Positives = 64/142 (45%), Gaps = 8/142 (5%) Query: 11 RLDQSLGYLELAAGGLTEDQIWFRPRTRMNAIGNLCLHLAGNEYQHLACAVGGRPAERDR 70 R+D+S+ L + + + W R +N++GNL LHL+GN Q++ +GG P R+R Sbjct: 14 RMDESVRMLAICMEKVPDGLFWHREHGVLNSVGNLMLHLSGNIRQYIISGLGGAPDSRER 73 Query: 71 PSEFLTRGGFTPXXXXXXXXXXXXXXXAVVNGLTEKDLERVVTVHYPENSEMDSYSWSIQ 130 EF AV+ G DL E + +++S Sbjct: 74 DMEFEAVQQSGRAEVWAGFQETVREAQAVIRGAQAADL--------LEKRNVQGFTFSGM 125 Query: 131 KILIGTAEHYAYHTGQIVYLAK 152 ++I EH +YHTGQI ++ K Sbjct: 126 GLVIHAVEHLSYHTGQIAFIVK 147 >A6CEE8.1 A6CEE8_9PLAN Putative uncharacterized protein Length = 186 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 66/150 (44%), Gaps = 8/150 (5%) Query: 3 EIISECMRRLDQSLGYLELAAGGLTEDQIWFRPRTRMNAIGNLCLHLAGNEYQHLACAVG 62 E I E + L+QS+ +E L +QIW+RP +N+IGNL LHL GN Q + Sbjct: 23 EYILESIHLLEQSVHKIEHCLNQLDRNQIWWRPEPELNSIGNLILHLCGNLNQWAVNGIP 82 Query: 63 GRPAERDRPSEFLTRGGFTPXXXXXXXXXXXXXXXAVVNGLTEKDLERVVTVHYPENSEM 122 ER R EF + T A + L+ + L E+ E+ Sbjct: 83 DLTDERQRALEFSSEVRLTVDELTGMITQTVAQASAAIQSLSPETL--------LESREI 134 Query: 123 DSYSWSIQKILIGTAEHYAYHTGQIVYLAK 152 ++ ++ + T H+ HT QI+YL + Sbjct: 135 QGFTVTVLGAISHTVPHFVGHTHQIIYLTR 164 >B1DE28.1 B1DE28_9BACL Putative uncharacterized protein Length = 148 Score = 63.5 bits (153), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 40/158 (25%), Positives = 66/158 (41%), Gaps = 22/158 (13%) Query: 1 VNEIISECMRRLDQSLGYLELAAGGLTEDQIWFRPRTRMNAIGNLCLHLAGNEYQHLACA 60 + EI + R D + L L + Q+ +RP N+I NL +H++GN + + A Sbjct: 1 MTEITAVLKNRFDAIEKRIILVLNQLDDQQVNWRPNESSNSITNLIVHISGNINERIGMA 60 Query: 61 VGGRPAERDRPSEFLTRGGFTPXXXXXXXXXXXXXXXAVVNGLTEKDLERVVTVHYPENS 120 + +P RDR EF T+ A+ + +LE Sbjct: 61 MNNKPFSRDRDKEFETQFKTKAELIELTHTSFGEVQTALTGNREQSNLE----------- 109 Query: 121 EMDSYSWSIQKILIGTAEHYAYHTGQIVYLAKWMQEED 158 I I +A H++ H GQI+Y+AK +++ED Sbjct: 110 -----------IFIQSATHFSEHMGQILYIAKILKDED 136 >C1Z166.1 C1Z166_PEDHE Putative uncharacterized protein Length = 149 Score = 57.0 bits (136), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 41/122 (33%), Positives = 56/122 (45%), Gaps = 6/122 (4%) Query: 28 EDQIWFRPRTRMNAIGNLCLHLAGNEYQHLACAVGGRPAERDRPSEFLTRGGFTPXXXXX 87 E IW R N+ GNLCLHL GN ++ +G RDRP EF + Sbjct: 27 EQHIWHVDRNIANSAGNLCLHLVGNLNTYVGAELGKTGYVRDRPLEFSLKNVPRAELVRM 86 Query: 88 XXXXXXXXXXAVVNGLTEKDLERVVTVHYPENSEMDSYSWSIQKILIGTAEHYAYHTGQI 147 A + LT++DLE+ YP+ ++ S S+ +LI + H AYH GQI Sbjct: 87 VEATIKVVNEA-LEPLTDQDLEK----DYPQVKIVEGGS-SVAFMLIHLSGHLAYHLGQI 140 Query: 148 VY 149 Y Sbjct: 141 NY 142 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.136 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,003,516,024 Number of extensions: 36342412 Number of successful extensions: 62237 Number of sequences better than 1.0e-05: 6 Number of HSP's gapped: 62245 Number of HSP's successfully gapped: 6 Length of query: 168 Length of database: 3,060,696,203 Length adjustment: 125 Effective length of query: 43 Effective length of database: 1,883,069,328 Effective search space: 80971981104 Effective search space used: 80971981104 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 126 (53.1 bits)