BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0584.0016.p
         (324 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KBB0.1 B3KBB0_9BACI Heat shock protein DnaJ domain protein          137   2e-30
B1DHL8.1 B1DHL8_9BACL Heat shock protein DnaJ domain protein          135   5e-30

>B3KBB0.1 B3KBB0_9BACI Heat shock protein DnaJ domain protein
          Length = 303

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 90/303 (29%), Positives = 150/303 (49%), Gaps = 12/303 (3%)

Query: 25  EKLKQAYERLGVPETVTREELNKRFDXXXXXXXXX------TTXXXXXXXXXXFQAIKLI 78
           ++LK+AYERLG+PE  T+E+L+ R+                             +A K I
Sbjct: 2   DQLKEAYERLGLPEDATKEQLDDRYTLLMRQTRSHQRREPDRAEEIEAEFAEFTKAYKFI 61

Query: 79  LDARDQQEIQEAEDQRLAKYGSLAGGARKWERFMRLYKTHXXXXXXXXXXXXFAGNALYN 138
           L+  +++ ++E   +R  KY   AG A K + F R YK H            +   +++N
Sbjct: 62  LEEENRKALEEMNQKRYGKYKRFAGTAEKTDHFFRYYKFHVLGGIALVGVLIYIVISIFN 121

Query: 139 NWQHKKYLATLPPVDAKIMFIGNFGVKDEDGKMDALNQAIIEQYPEWKRVDSSMVYLPKT 198
           +   K+ LA+LPPVD ++MF+G++  +D    +  +  AI+ Q+P+WKRV  ++ Y+P  
Sbjct: 122 HQAEKERLASLPPVDLEVMFLGSYMSQDGGQDLKPIEDAILAQFPDWKRVTVNINYVPPL 181

Query: 199 GEGPDTLDMNYLQKAVVELAANTPDILILDEATLEWIGKQDGFQNLEPILADGKISK--D 256
            +  +  D   LQKA++ L+   PD+ I+D+   +WIG Q   + LE  + +G++ +   
Sbjct: 182 -DSNNPQDAAMLQKALLVLSTERPDLYIMDQTAFDWIGNQGMVRPLEAEV-EGELKELLT 239

Query: 257 DPRLKWGKVGESTEEQLYAVDITDSKFVSSLPINHNTKSIEIGVLGGDEPKEKIIQFVKH 316
              L  G   E   E +YAVDI  S     LP+    K +  G+  G E     ++F+K 
Sbjct: 240 PEMLVKGTNEEDGAEHVYAVDIMGSPLGEELPV--LKKEMFAGIREGTERDANALRFIKQ 297

Query: 317 IAE 319
             E
Sbjct: 298 YLE 300


>B1DHL8.1 B1DHL8_9BACL Heat shock protein DnaJ domain protein
          Length = 302

 Score =  135 bits (340), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 91/302 (30%), Positives = 142/302 (47%), Gaps = 11/302 (3%)

Query: 25  EKLKQAYERLGVPETVTREELNKRFDXXXXXXXXXTTXXXXXXXXXXFQ----AIKLILD 80
           ++LK+AYE +G+PE  ++EE++KR+                      F+    A + IL 
Sbjct: 2   DELKRAYETMGLPENASKEEVDKRYTTLMRQARARQRENPDGTDQADFEEVTRAYRYILG 61

Query: 81  ARDQQEIQEAEDQRLAKYGSLAGGARKWERFMRLYKTHXXXXXXXXXXXXFAGNALYNNW 140
             +++  +    Q   KY  +AG A K + F R YK H               N+  ++ 
Sbjct: 62  EDNRKANEAFNQQEYGKYKKMAGSAEKVDHFWRYYKFHVLGGIIAIILVIVGINSYLDHR 121

Query: 141 QHKKYLATLPPVDAKIMFIGNFGVKDEDGKMDA---LNQAIIEQYPEWKRVDSSMVYLPK 197
             ++ LA LPPVD  IMF+G + + D  GK      + +A+I+Q+PE+KR   +  Y+P 
Sbjct: 122 AEQERLAKLPPVDLSIMFLGEYYMSDSTGKQTEEADIEEALIKQFPEFKRFKVNFTYVPL 181

Query: 198 TGEGPDTLDMNYLQKAVVELAANTPDILILDEATLEWIGKQDGFQNLEPILADGKISKDD 257
             +  D +D+   QKA+V LA   PDI I D A   W+G Q  F NL+      K+ K +
Sbjct: 182 --DAKDQMDIASQQKAMVVLATERPDIYITDTAAFNWVGPQGAFMNLDSQTDITKLLKPE 239

Query: 258 PRLKWGKVGESTEEQLYAVDITDSKFVSSLPINHNTKSIEIGVLGGDEPKEKIIQFVKHI 317
              K  K  E   E  Y V I+ S  + ++P+      I   V  G +  EK +QF++  
Sbjct: 240 DSFKQ-KTEEDQAEHTYGVKISGSPIIGNIPMQAKDNYI-ASVREGSKNTEKALQFIEKF 297

Query: 318 AE 319
            E
Sbjct: 298 LE 299


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.315    0.135    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 1,839,672,639
Number of extensions: 70775945
Number of successful extensions: 147502
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 147495
Number of HSP's successfully gapped: 2
Length of query: 324
Length of database: 3,060,696,203
Length adjustment: 136
Effective length of query: 188
Effective length of database: 1,779,438,163
Effective search space: 334534374644
Effective search space used: 334534374644
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 131 (55.1 bits)