BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0584.0011.p
         (116 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A7LAY2.1 A7LAY2_9BACT Nitrogenase 3 delta subunit                     177   4e-43
B9DYP7.1 B9DYP7_CLOK1 Putative uncharacterized protein                176   5e-43
A5N544.1 A5N544_CLOK5 AnfG EC=1.18.6.1                                176   5e-43
Q8TRH0.1 Q8TRH0_METAC Nitrogenase, subunit delta                      174   2e-42
Q2RUK1.1 Q2RUK1_RHORT Nitrogenase EC=1.18.6.1                         170   3e-41

>A7LAY2.1 A7LAY2_9BACT Nitrogenase 3 delta subunit
          Length = 117

 Score =  177 bits (448), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 81/115 (70%), Positives = 99/115 (86%)

Query: 2   ENLMQERVAQLENYIMKKCLWQFHSRSWDREKQNEGVLTKTMQILCDEPVDKSTPADRCY 61
           EN+++ERVAQLE++I+KKCLWQFHSR+WDRE+QNE +L KTMQILC EPV K T  DRCY
Sbjct: 3   ENVLKERVAQLEDHILKKCLWQFHSRAWDRERQNENILGKTMQILCGEPVAKETAEDRCY 62

Query: 62  WADAVVLAEEYKSRFEWLSEMGREEIKLLMQALKDRIDYVTITGSLNKELTVKQY 116
           +ADAV LA+ YK RF+W++ +   EIK +M ALK+RIDYVTITGSLN+ELTVKQY
Sbjct: 63  YADAVCLADAYKERFDWINTLNVAEIKEVMAALKERIDYVTITGSLNEELTVKQY 117


>B9DYP7.1 B9DYP7_CLOK1 Putative uncharacterized protein
          Length = 116

 Score =  176 bits (447), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 77/116 (66%), Positives = 100/116 (86%)

Query: 1   MENLMQERVAQLENYIMKKCLWQFHSRSWDREKQNEGVLTKTMQILCDEPVDKSTPADRC 60
           ME++M++R+ QL +YIMK CLWQF+SR+WDREKQNEG+LTKTMQILC+EP +  TPADRC
Sbjct: 1   MEDIMKDRIEQLVDYIMKNCLWQFNSRAWDREKQNEGILTKTMQILCEEPAEHKTPADRC 60

Query: 61  YWADAVVLAEEYKSRFEWLSEMGREEIKLLMQALKDRIDYVTITGSLNKELTVKQY 116
           YW DAV LA+ +KSR+ WL+ M + E+K+LM+ LK+R+D++TITGSLNKELTV  Y
Sbjct: 61  YWVDAVCLADAFKSRYSWLAAMDKTEVKILMKELKERMDFLTITGSLNKELTVPLY 116


>A5N544.1 A5N544_CLOK5 AnfG EC=1.18.6.1
          Length = 116

 Score =  176 bits (447), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 77/116 (66%), Positives = 100/116 (86%)

Query: 1   MENLMQERVAQLENYIMKKCLWQFHSRSWDREKQNEGVLTKTMQILCDEPVDKSTPADRC 60
           ME++M++R+ QL +YIMK CLWQF+SR+WDREKQNEG+LTKTMQILC+EP +  TPADRC
Sbjct: 1   MEDIMKDRIEQLVDYIMKNCLWQFNSRAWDREKQNEGILTKTMQILCEEPAEHKTPADRC 60

Query: 61  YWADAVVLAEEYKSRFEWLSEMGREEIKLLMQALKDRIDYVTITGSLNKELTVKQY 116
           YW DAV LA+ +KSR+ WL+ M + E+K+LM+ LK+R+D++TITGSLNKELTV  Y
Sbjct: 61  YWVDAVCLADAFKSRYSWLAAMDKTEVKILMKELKERMDFLTITGSLNKELTVPLY 116


>Q8TRH0.1 Q8TRH0_METAC Nitrogenase, subunit delta
          Length = 116

 Score =  174 bits (441), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 78/116 (67%), Positives = 97/116 (83%)

Query: 1   MENLMQERVAQLENYIMKKCLWQFHSRSWDREKQNEGVLTKTMQILCDEPVDKSTPADRC 60
           M+++M++R+ QL ++IMK CLWQFHSRSWDRE+QNEG+LTKTMQ+LCDEPVD STP+DRC
Sbjct: 1   MDDVMKDRIEQLVDFIMKWCLWQFHSRSWDRERQNEGILTKTMQLLCDEPVDLSTPSDRC 60

Query: 61  YWADAVVLAEEYKSRFEWLSEMGREEIKLLMQALKDRIDYVTITGSLNKELTVKQY 116
           YW DAV LA  +K  + WL  M +++IKLLMQ LKDRIDY+TI GSLN+ELT   Y
Sbjct: 61  YWVDAVYLANGFKKTYPWLGTMEKKDIKLLMQGLKDRIDYLTINGSLNQELTNPLY 116


>Q2RUK1.1 Q2RUK1_RHORT Nitrogenase EC=1.18.6.1
          Length = 116

 Score =  170 bits (431), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 75/116 (64%), Positives = 96/116 (82%)

Query: 1   MENLMQERVAQLENYIMKKCLWQFHSRSWDREKQNEGVLTKTMQILCDEPVDKSTPADRC 60
           M++LM++R+  L +YIMK CLWQFHSRSWDR++QNEG+LTKT Q+LCDEPVD  TPAD+C
Sbjct: 1   MDDLMKDRIDLLIDYIMKHCLWQFHSRSWDRKRQNEGILTKTTQLLCDEPVDLGTPADKC 60

Query: 61  YWADAVVLAEEYKSRFEWLSEMGREEIKLLMQALKDRIDYVTITGSLNKELTVKQY 116
           YW DAV LA+ YKSR+ WL  M +++IK LM AL +R+D++TITGSLN ELT + Y
Sbjct: 61  YWVDAVCLADAYKSRYPWLKTMDKDDIKALMGALHERLDHLTITGSLNLELTDQHY 116


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.318    0.131    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 636,443,494
Number of extensions: 21468657
Number of successful extensions: 62311
Number of sequences better than 1.0e-05: 88
Number of HSP's gapped: 62309
Number of HSP's successfully gapped: 88
Length of query: 116
Length of database: 3,060,696,203
Length adjustment: 83
Effective length of query: 33
Effective length of database: 2,278,751,958
Effective search space: 75198814614
Effective search space used: 75198814614
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 125 (52.8 bits)