BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0584.0007.p
         (77 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KHK9.1 B3KHK9_9BACI Ferredoxin (4Fe-4S)                              81   3e-14
B1DMM3.1 B1DMM3_9BACL Ferredoxin                                       77   7e-13
Q9KGA3.1 Q9KGA3_BACHD Ferredoxin [4Fe-4S]                              74   5e-12
A8VXQ5.1 A8VXQ5_9BACI D-isomer specific 2-hydroxyacid dehydrogen...    58   3e-07
Q9KAD2.1 Q9KAD2_BACHD Ferredoxin [4Fe-4S]                              57   7e-07

>B3KHK9.1 B3KHK9_9BACI Ferredoxin (4Fe-4S)
          Length = 79

 Score = 80.9 bits (198), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 35/76 (46%), Positives = 53/76 (69%)

Query: 1  MNSFASVNQESCIACGACNSAAPDIFDLDYNGIAGVIYEGDKNRGITAIEPELLEELQEA 60
          M  F  V++++CIACGAC + APDI+D D  G+A VI++GD NRG+T I  ++ +++ +A
Sbjct: 1  MAKFTWVDKDTCIACGACGATAPDIYDYDDEGLAEVIFDGDNNRGVTEIPEDMHDDMLDA 60

Query: 61 FVSCPTHCIQLAAVPF 76
             CPT  I++A  PF
Sbjct: 61 CDGCPTDSIRIADEPF 76


>B1DMM3.1 B1DMM3_9BACL Ferredoxin
          Length = 78

 Score = 76.6 bits (187), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 37/76 (48%), Positives = 49/76 (64%)

Query: 1  MNSFASVNQESCIACGACNSAAPDIFDLDYNGIAGVIYEGDKNRGITAIEPELLEELQEA 60
          M  F  V +++CIACGAC + APDI+D D  GIA VI+  D N G T I  +L ++LQ+A
Sbjct: 1  MAKFTWVEKDTCIACGACGATAPDIYDYDDEGIAEVIFGNDGNHGNTEIPEDLYDDLQDA 60

Query: 61 FVSCPTHCIQLAAVPF 76
             CPT  I++A  PF
Sbjct: 61 CDGCPTDSIKIADDPF 76


>Q9KGA3.1 Q9KGA3_BACHD Ferredoxin [4Fe-4S]
          Length = 82

 Score = 73.9 bits (180), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 38/76 (50%), Positives = 50/76 (65%), Gaps = 2/76 (2%)

Query: 1  MNSFASVNQESCIACGACNSAAPDIFDLDYNGIAGVIYEGDKNRGITAIEPELLEELQEA 60
          M  F  V+Q++CIACGAC ++APDIFD D  G+A   Y  D N+G T I+P LL +L++A
Sbjct: 1  MPIFTIVDQDTCIACGACGASAPDIFDYDDEGLA--FYIADHNQGNTPIDPSLLNDLEDA 58

Query: 61 FVSCPTHCIQLAAVPF 76
             CPT  I+LA   F
Sbjct: 59 VEGCPTGSIKLAEEAF 74


>A8VXQ5.1 A8VXQ5_9BACI D-isomer specific 2-hydroxyacid dehydrogenase,
          NAD-binding
          Length = 82

 Score = 57.8 bits (138), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)

Query: 1  MNSFASVNQESCIACGACNSAAPDIFDLDYNGIAGVIYEGDKNRGITAIEPELLEELQEA 60
          M  +  V++++CIACGAC SAAPDI+D D +GIA VI   D N+G   +  EL E++++A
Sbjct: 1  MAKYTIVDKDTCIACGACGSAAPDIYDYDDDGIAWVIL--DDNQGTAEVPEELYEDMEDA 58

Query: 61 FVSCPTHCIQLAAVPF 76
             CPT  I++A  PF
Sbjct: 59 LDGCPTDSIKIAEEPF 74


>Q9KAD2.1 Q9KAD2_BACHD Ferredoxin [4Fe-4S]
          Length = 82

 Score = 56.6 bits (135), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 33/76 (43%), Positives = 51/76 (67%), Gaps = 2/76 (2%)

Query: 1  MNSFASVNQESCIACGACNSAAPDIFDLDYNGIAGVIYEGDKNRGITAIEPELLEELQEA 60
          M  +  V++E+CIACGAC +AAPD++D D  G+A VI   D N G+  +  +L+E++++A
Sbjct: 1  MAKYTIVDKETCIACGACGAAAPDVYDYDDEGLAYVIL--DDNEGVAEVPEDLIEDMEDA 58

Query: 61 FVSCPTHCIQLAAVPF 76
             CPT  I++A  PF
Sbjct: 59 LEGCPTDSIRVADEPF 74


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.320    0.135    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 451,864,529
Number of extensions: 15288956
Number of successful extensions: 57192
Number of sequences better than 1.0e-05: 132
Number of HSP's gapped: 57117
Number of HSP's successfully gapped: 132
Length of query: 77
Length of database: 3,060,696,203
Length adjustment: 48
Effective length of query: 29
Effective length of database: 2,608,487,483
Effective search space: 75646137007
Effective search space used: 75646137007
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 125 (52.8 bits)