BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0583.0002.p (285 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q2B7L2.1 Q2B7L2_9BACI L-alanoyl-D-glutamate peptidase 174 9e-42 B1D4U2.1 B1D4U2_9BACL Peptidase M15B and M15C DD-carboxypeptidas... 171 5e-41 B7GIP5.1 B7GIP5_ANOFW L-alanoyl-D-glutamate peptidase-related pr... 171 7e-41 Q5QL26.1 Q5QL26_GEOKA Putative uncharacterized protein GKP41 162 3e-38 B7YEE2.1 B7YEE2_9BACI Peptidase M15B and M15C DD-carboxypeptidas... 161 8e-38 >Q2B7L2.1 Q2B7L2_9BACI L-alanoyl-D-glutamate peptidase Length = 205 Score = 174 bits (440), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 84/138 (60%), Positives = 101/138 (73%), Gaps = 1/138 (0%) Query: 18 LQPVVKAAATALIERCYAREVNIVITQGLRTIAEQDALYAQGRTKPGQIVTNAKGGHSYH 77 L PVV A LI + +NIVITQ R+I EQ+ LYA+GRT G+IVTNAKGG SYH Sbjct: 65 LHPVVSAKKDELISLAADKGINIVITQDFRSIEEQNELYAKGRTAEGEIVTNAKGGESYH 124 Query: 78 NYGLAIDFALLLPDGRNVSWDMNRDGDGDKVADWNEVVQEAKALGFEWGGDWTSIKDYPH 137 N+GLAIDFALL +G V WDMN DG+G+ ADW+EVV+ AK LGFEWGGDW S KDYPH Sbjct: 125 NFGLAIDFALLSLNGA-VIWDMNYDGNGNSRADWDEVVEIAKGLGFEWGGDWRSFKDYPH 183 Query: 138 FQMSFGLALSALRQGYQP 155 Q FGL++ L++G +P Sbjct: 184 LQYDFGLSIWELQRGKRP 201 >B1D4U2.1 B1D4U2_9BACL Peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin Length = 212 Score = 171 bits (434), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 82/155 (52%), Positives = 105/155 (67%), Gaps = 2/155 (1%) Query: 5 EQVKAKSAKRLDGLQPVVKAAATALIERCYAREVNIVITQGLRTIAEQDALYAQGRTKPG 64 EQ AKS + GL P+V A L+ + + I+IT R+ EQ+ LY +GR++PG Sbjct: 60 EQAPAKSTA-IAGLHPIVAEKADELVAQTGKLGIKIMITDDFRSSEEQNTLYKKGRSEPG 118 Query: 65 QIVTNAKGGHSYHNYGLAIDFALLLPDGRNVSWDMNRDGDGDKVADWNEVVQEAKALGFE 124 Q+VTN KGG SYHNYGLA+DFAL+ PDG +V WDM DG+G+ +DW EVV AK LGF Sbjct: 119 QVVTNVKGGASYHNYGLAVDFALVKPDG-DVIWDMEYDGNGNGKSDWMEVVSAAKKLGFA 177 Query: 125 WGGDWTSIKDYPHFQMSFGLALSALRQGYQPTAAQ 159 WGGDWTS KDYPH QM FG ++ L+ G +P A + Sbjct: 178 WGGDWTSFKDYPHLQMDFGYSIKDLQNGKRPPATE 212 >B7GIP5.1 B7GIP5_ANOFW L-alanoyl-D-glutamate peptidase-related protein containing SLH domain Length = 213 Score = 171 bits (433), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 84/154 (54%), Positives = 110/154 (71%), Gaps = 9/154 (5%) Query: 2 LTLEQVKAKSAKRLDGLQPVVKAAATALIERCYAREVNIVITQGLRTIAEQDALYAQGRT 61 + L+++ K+ K+L G+ P V A A L+ Y + I+ITQGLRTI EQ+ALYAQGR Sbjct: 3 IGLKELLEKADKKLQGVHPTVAAKARQLVSLAYKEGIPIIITQGLRTIEEQNALYAQGRA 62 Query: 62 KPGQIVTNAKGGHSYHNYGLAIDFALLLPDGRNVSWDMNRDGDGDKVADWNEVVQEAKAL 121 KPG+IVTNAKGG+SYHN+GLA DFA+L +G +V+W+++ DK W V K+L Sbjct: 63 KPGKIVTNAKGGYSYHNFGLAFDFAILNANG-SVNWNVD-----DK---WKRVGAIGKSL 113 Query: 122 GFEWGGDWTSIKDYPHFQMSFGLALSALRQGYQP 155 G EWGGDWTS KDYPHFQ +FGL+L+ LR G +P Sbjct: 114 GLEWGGDWTSFKDYPHFQYTFGLSLADLRSGKKP 147 >Q5QL26.1 Q5QL26_GEOKA Putative uncharacterized protein GKP41 Length = 156 Score = 162 bits (410), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 82/166 (49%), Positives = 106/166 (63%), Gaps = 20/166 (12%) Query: 2 LTLEQVKAKSAKRLDGLQPVVKAAATALIERCYAREVNIVITQGLRTIAEQDALYAQGRT 61 + L ++ ++ KRL GL P+V A ALI + Y + I+ITQG RT+ EQ+ LYA GRT Sbjct: 1 MELVELLFRAEKRLSGLHPLVADKARALIRKAYEEGIYIIITQGFRTVEEQNRLYALGRT 60 Query: 62 KPGQIVTNAKGGHSYHNYGLAIDFAL-------LLPDGRNVSWDMNRDGDGDKVADWNEV 114 KPG+IVTNA+GG+SYHN+GLA D + L+P SW ++R W V Sbjct: 61 KPGRIVTNARGGYSYHNFGLAFDVCVCNVFKGTLIP-----SWSLDR--------RWFRV 107 Query: 115 VQEAKALGFEWGGDWTSIKDYPHFQMSFGLALSALRQGYQPTAAQV 160 Q K+LG EWGGDW S KDYPHFQ +FGL+L+ LR G +P AA V Sbjct: 108 GQIGKSLGLEWGGDWKSFKDYPHFQYTFGLSLAQLRAGKRPPAAVV 153 >B7YEE2.1 B7YEE2_9BACI Peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin Length = 156 Score = 161 bits (407), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 81/164 (49%), Positives = 104/164 (63%), Gaps = 20/164 (12%) Query: 2 LTLEQVKAKSAKRLDGLQPVVKAAATALIERCYAREVNIVITQGLRTIAEQDALYAQGRT 61 + L ++ ++ KRL GL P+V A ALI + Y + I+ITQG RTI EQ+ LYA GRT Sbjct: 1 MELVELLFRAEKRLSGLHPLVADKARALIRKAYEEGIYIIITQGFRTIEEQNRLYALGRT 60 Query: 62 KPGQIVTNAKGGHSYHNYGLAIDFAL-------LLPDGRNVSWDMNRDGDGDKVADWNEV 114 KPG+IVTNA+GG+SYHN+GLA D + L+P SW ++R W V Sbjct: 61 KPGRIVTNARGGYSYHNFGLAFDICVCNVFKGTLIP-----SWSLDR--------RWFRV 107 Query: 115 VQEAKALGFEWGGDWTSIKDYPHFQMSFGLALSALRQGYQPTAA 158 Q K+LG EWGGDW S KDYPHFQ +FGL+L+ LR G +P A Sbjct: 108 GQIGKSLGLEWGGDWKSFKDYPHFQYTFGLSLAQLRAGKRPPTA 151 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.315 0.131 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,625,566,469 Number of extensions: 65343084 Number of successful extensions: 228331 Number of sequences better than 1.0e-05: 101 Number of HSP's gapped: 228285 Number of HSP's successfully gapped: 101 Length of query: 285 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 151 Effective length of database: 1,798,280,193 Effective search space: 271540309143 Effective search space used: 271540309143 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 130 (54.7 bits)