BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0580.0048.p (319 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KA46.1 B3KA46_9BACI Binding-protein-dependent transport system... 423 e-117 Q9KBK1.1 Q9KBK1_BACHD Sugar transport system (Permease) 263 1e-68 B7GM31.1 B7GM31_ANOFW ABC-type sugar transport system, permease ... 257 1e-66 A8VQG5.1 A8VQG5_9BACI Histidine kinase, dimerisation and phospho... 251 8e-65 Q2BEB2.1 Q2BEB2_9BACI Sugar transport system (Permease) 248 4e-64 >B3KA46.1 B3KA46_9BACI Binding-protein-dependent transport systems inner membrane component Length = 318 Score = 423 bits (1088), Expect = e-117, Method: Compositional matrix adjust. Identities = 217/321 (67%), Positives = 245/321 (76%), Gaps = 5/321 (1%) Query: 1 MAEPVLA-SPH-AESKRPFLTEQRRSRITAYTXXXXXXXXXXXXGLYPIFFTIYLSFFKW 58 MA+ A SP +R LTE RSR TAYT GLYPI FTIYLSFFKW Sbjct: 1 MADTATAESPQPVPQRRRLLTETVRSRFTAYTFISPFFILFAIFGLYPILFTIYLSFFKW 60 Query: 59 DALGPMKFXXXXMKNYDLVTSDPTFWISFSNTLIMGLMGTVPQIIXXXXXXXXXHSGMTK 118 DALGPMK+ KNY+L+TSDPTFWI+FSNTLIM LMGTVPQ+I +S + + Sbjct: 61 DALGPMKYVG--FKNYELITSDPTFWIAFSNTLIMALMGTVPQLIVALFVAVILNSALNR 118 Query: 119 FKKTFRILYFMPNITSIVAVTLVFSTLFGNNGMINWMLNGLGLDSVAFNSGWWGVKIAIS 178 FK TFRILYFMPNITSIVAVTLVFST+FGNNGM+NW+LN G +SV FNSGWWGVKIAIS Sbjct: 119 FKNTFRILYFMPNITSIVAVTLVFSTMFGNNGMVNWLLNTFGAESVPFNSGWWGVKIAIS 178 Query: 179 TMVMWRWTGYNAIIFLSGLQSIPTDLYEAARIDGANRRQQFTFITMPLLRPFIVFVTLLS 238 +MVMWRW GYNAIIFLSGLQSIPTD+YEAA+IDGA R QQ +IT+PLLRPFI+FVTL+S Sbjct: 179 SMVMWRWMGYNAIIFLSGLQSIPTDIYEAAKIDGATRGQQLLYITLPLLRPFILFVTLVS 238 Query: 239 TIGALQLFTEPYVFLGQSGTGSTRQEGITMVTYLYSEAFRNXXXXXXXXXXXXXXXXXII 298 TIGALQLFTEPYVFLGQSGTGSTRQEG+TMVTYLY+EAF+N I+ Sbjct: 239 TIGALQLFTEPYVFLGQSGTGSTRQEGVTMVTYLYNEAFKNGFFGTAAATAVLLFIATIL 298 Query: 299 FSLLNMLASSRMGGDTGGKKA 319 FS+LNM+ R G D+GGKKA Sbjct: 299 FSVLNMIL-GREGKDSGGKKA 318 >Q9KBK1.1 Q9KBK1_BACHD Sugar transport system (Permease) Length = 305 Score = 263 bits (673), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 135/304 (44%), Positives = 195/304 (64%), Gaps = 9/304 (2%) Query: 10 HAESKRPFLTEQRRSRITAYTXXXXXXXXXXXXGLYPIFFTIYLSFFKWDALGPMKFXXX 69 H+ +R +LTE+RR+ ++AY GL+P+ F+ YLSFF+WD L PM + Sbjct: 3 HSAKER-WLTEERRTALSAYAFISPFFILFAVFGLFPMIFSFYLSFFRWDGLNPMSYVG- 60 Query: 70 XMKNYDLVTSDPTFWISFSNTLIMGLMGTVPQIIXXXXXXXXXHSGMTKFKKTFRILYFM 129 + N+ L+ +DPTF+ + NT I+G++GT+PQII +S + +F+ TFR L F+ Sbjct: 61 -LANFQLIFNDPTFFSAIKNTFIIGILGTLPQIIVGILLAFALNSALIRFQHTFRTLVFL 119 Query: 130 PNITSIVAVTLVFSTLFGNN--GMINWMLNGLGLDSVAFNSGWWGVKIAISTMVMWRWTG 187 P ITSIVAV ++F +F N G+ N++L+ +D V ++ +W VKIAI+TMV WRW G Sbjct: 120 PYITSIVAVAIIFGLVFNNQPFGLANYVLSLFNIDPVRWSQEYWPVKIAIATMVFWRWVG 179 Query: 188 YNAIIFLSGLQSIPTDLYEAARIDGANRRQQFTFITMPLLRPFIVFVTLLSTIGALQLFT 247 YN IIFL+G+QSIP +LYEAA+IDGA QQ IT+P+L+PFI+FV +TIG+LQLFT Sbjct: 180 YNTIIFLAGMQSIPKELYEAAKIDGATIGQQIRLITVPMLKPFILFVVFTATIGSLQLFT 239 Query: 248 EPYVFLGQSGTGSTRQEGITMVTYLYSEAFRNXXXXXXXXXXXXXXXXXIIFSLLNMLAS 307 EP +FLG+ R+EGITMV YL+ +AF I + +N+L + Sbjct: 240 EPLIFLGR----GLREEGITMVAYLWRDAFVLNAFGTASAAAIVLFFIIITLTAINLLIT 295 Query: 308 SRMG 311 +R+G Sbjct: 296 NRIG 299 >B7GM31.1 B7GM31_ANOFW ABC-type sugar transport system, permease component Length = 308 Score = 257 bits (656), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 130/302 (43%), Positives = 188/302 (62%), Gaps = 11/302 (3%) Query: 18 LTEQRRSRITAYTXXXXXXXXXXXXGLYPIFFTIYLSFFKWDALGPMKFXXXXMKNYDLV 77 L++++++ + Y G +P+ F+ YL+F KW+ G M F +KN+ + Sbjct: 16 LSDKKKTALAGYLFISPFFLLFTIFGAFPMLFSFYLAFQKWNGFGEMTFVG--VKNFSFI 73 Query: 78 TSDPTFWISFSNTLIMGLMGTVPQIIXXXXXXXXXHSGMTKFKKTFRILYFMPNITSIVA 137 +DP FW S NT+++GL+GT PQ+I +S + KFK FR+ YF+PN+TSIVA Sbjct: 74 FTDPLFWKSIYNTIVIGLLGTGPQLIAALILAVALNSAIVKFKSVFRVAYFVPNVTSIVA 133 Query: 138 VTLVFSTLFGNN--GMINWMLNGLGLDSVAFNSGWWGVKIAISTMVMWRWTGYNAIIFLS 195 V ++F+ LF G++N L+ G+ V++ + WG KIAI+TM+ WRW GYN+IIFL+ Sbjct: 134 VAIIFTVLFSEQEAGLVNATLSLFGISPVSWQTSEWGAKIAIATMIFWRWVGYNSIIFLA 193 Query: 196 GLQSIPTDLYEAARIDGANRRQQFTFITMPLLRPFIVFVTLLSTIGALQLFTEPYVFLGQ 255 GLQSIP DLYEAA IDGA + QQF FIT+P+L+P IVFV +TIG+LQ+F EP +F Sbjct: 194 GLQSIPKDLYEAAEIDGAKKWQQFLFITVPMLKPIIVFVVFTATIGSLQIFAEPLIF--- 250 Query: 256 SGTGSTRQEGITMVTYLYSEAFRNXXXXXXXXXXXXXXXXXIIFSLLNMLASSRMGGDTG 315 G+G R+E +T+V YL+ EAF N I+F+ +N AS+R+ D Sbjct: 251 -GSG-FREESMTIVLYLWREAFSNNAFGTASATAVSLFLLIIVFTTINFFASNRL--DKS 306 Query: 316 GK 317 GK Sbjct: 307 GK 308 >A8VQG5.1 A8VQG5_9BACI Histidine kinase, dimerisation and phosphoacceptor region Length = 325 Score = 251 bits (640), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 132/311 (42%), Positives = 195/311 (62%), Gaps = 11/311 (3%) Query: 3 EPVLASPHAESKRPFLTEQRRSRITAYTXXXXXXXXXXXXGLYPIFFTIYLSFFKWDALG 62 EP A+P +R F ++++++ + Y GL+PI F+ YL+FF+WD LG Sbjct: 15 EP--AAPKEPKRRKF-SQRQKNMASGYLFISPFYFLFAVFGLFPILFSFYLAFFRWDGLG 71 Query: 63 PMKFXXXXMKNYDLVTSDPTFWISFSNTLIMGLMGTVPQIIXXXXXXXXXHSGMTKFKKT 122 PM++ +N++++ +DP FW S NT+I+GLMGT PQ+I +S + K K Sbjct: 72 PMEYVG--FRNFEIIFNDPLFWKSLYNTIIIGLMGTAPQLIAALLLAFALNSVLVKAKSA 129 Query: 123 FRILYFMPNITSIVAVTLVFSTLFGN--NGMINWMLNGLGLDSVAFNSGWWGVKIAISTM 180 FR+ F+P +TSIVAV +VFS +F N +G++N + G D V ++ WG K AI+TM Sbjct: 130 FRLAIFLPYVTSIVAVAIVFSVIFSNQASGLVNSFIGLFGADPVTWSRSEWGTKFAIATM 189 Query: 181 VMWRWTGYNAIIFLSGLQSIPTDLYEAARIDGANRRQQFTFITMPLLRPFIVFVTLLSTI 240 + WRW GYN II+L+G+QSIP DLYEAA+IDGA RQQ ++T+P+L+PFI+F +TI Sbjct: 190 IFWRWVGYNMIIYLAGMQSIPNDLYEAAKIDGATVRQQIWYVTIPMLKPFIIFTVFTATI 249 Query: 241 GALQLFTEPYVFLGQSGTGSTRQEGITMVTYLYSEAFRNXXXXXXXXXXXXXXXXXIIFS 300 GALQ+F EP++F G++G R EGIT+V YLY +AF + I+ S Sbjct: 250 GALQVFAEPHIFQGRAG----RTEGITVVLYLYRDAFVSNFFGTASATAIVLFFIIIVMS 305 Query: 301 LLNMLASSRMG 311 + NM ++R+G Sbjct: 306 ISNMYFANRIG 316 >Q2BEB2.1 Q2BEB2_9BACI Sugar transport system (Permease) Length = 321 Score = 248 bits (634), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 126/263 (47%), Positives = 167/263 (63%), Gaps = 6/263 (2%) Query: 18 LTEQRRSRITAYTXXXXXXXXXXXXGLYPIFFTIYLSFFKWDALGPMKFXXXXMKNYDLV 77 L+E ++ I+ Y GLYP F++YL+F KW+ L PM F + N+ +V Sbjct: 22 LSESKKDMISGYLYIAPFFIIFAIIGLYPALFSLYLAFQKWNGLSPMTFAG--LNNFKIV 79 Query: 78 TSDPTFWISFSNTLIMGLMGTVPQIIXXXXXXXXXHSGMTKFKKTFRILYFMPNITSIVA 137 DP FW S NT++MGL+GT PQ+I + +FK FR+ FMP ITS+VA Sbjct: 80 LEDPLFWKSVYNTIVMGLLGTAPQLIIGIILAFLLNLTFIRFKNFFRVTIFMPYITSMVA 139 Query: 138 VTLVFSTLFGNN--GMINWMLNGLGLDSVAFNSGWWGVKIAISTMVMWRWTGYNAIIFLS 195 V L+FS LF N+ + N++L G D V + + WG KIAIS MV WRW GYN IIFL+ Sbjct: 140 VALIFSVLFSNHETSLANYVLGLFGFDPVNWGASEWGTKIAISIMVFWRWVGYNTIIFLA 199 Query: 196 GLQSIPTDLYEAARIDGANRRQQFTFITMPLLRPFIVFVTLLSTIGALQLFTEPYVFLGQ 255 G+QSIP DLYEAA IDGA++ QQ +IT+PLL+PFI+ ST+GALQLF+EP VFLG Sbjct: 200 GIQSIPNDLYEAATIDGASKTQQLFYITLPLLKPFILLTVFFSTVGALQLFSEPTVFLGA 259 Query: 256 SGTGSTRQEGITMVTYLYSEAFR 278 +R E +T+V YLY +AF+ Sbjct: 260 GAF--SRDEAMTIVMYLYRDAFK 280 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.326 0.139 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,561,481,333 Number of extensions: 54231189 Number of successful extensions: 164237 Number of sequences better than 1.0e-05: 5417 Number of HSP's gapped: 159928 Number of HSP's successfully gapped: 5418 Length of query: 319 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 184 Effective length of database: 1,788,859,178 Effective search space: 329150088752 Effective search space used: 329150088752 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 131 (55.1 bits)