BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0580.0047.p (287 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KA47.1 B3KA47_9BACI Binding-protein-dependent transport system... 483 e-134 Q9KBK0.1 Q9KBK0_BACHD Sugar transport system (Permease) 305 4e-81 A8VQG7.1 A8VQG7_9BACI Response regulator receiver protein 298 4e-79 B7GM30.1 B7GM30_ANOFW ABC-type sugar transport system, permease ... 294 7e-78 C0UYT0.1 C0UYT0_9BACT Carbohydrate ABC transporter membrane prot... 287 8e-76 >B3KA47.1 B3KA47_9BACI Binding-protein-dependent transport systems inner membrane component Length = 287 Score = 483 bits (1242), Expect = e-134, Method: Compositional matrix adjust. Identities = 231/287 (80%), Positives = 258/287 (89%) Query: 1 VSTLRTYKKNPDDLGLFGKFWFYVLMILGALVSIFPFYWMFVVGTNDKGAVFHVPPLLTI 60 +ST+ +K PD+ G+ KF+FY+ MILGALVS+FPFYWMFVV TNDK A FH+PPLLT Sbjct: 1 MSTVAISRKKPDEPGVVAKFFFYLFMILGALVSVFPFYWMFVVATNDKDAAFHIPPLLTP 60 Query: 61 GDQFIDNFKRVLDKADFFQALGNSLFVSSMVTISVVFFCTLAGYAFAKYEFPFKNVLFYF 120 G QF DNF RVL++ DFF+AL NS+ VS+ VT+SVVF CTLAGYAFAKYEFP K LF F Sbjct: 61 GTQFFDNFARVLERTDFFRALMNSVVVSTAVTLSVVFLCTLAGYAFAKYEFPLKKTLFVF 120 Query: 121 VIATLFVPQQLGVLPTYVIMAKLHWIDSFKALIVPAMVNAFGIFWMRQYISTAVHTELIE 180 VIAT+ VP QLGVLP YVIMAKLHWIDS+KALIVPAMVNAFGIFWMRQYI++AVHTELIE Sbjct: 121 VIATMLVPAQLGVLPQYVIMAKLHWIDSYKALIVPAMVNAFGIFWMRQYIASAVHTELIE 180 Query: 181 AGRIDGGGHFRIFWNIAIPVITPAMATLGILNFMTVWNDFFWPLVVLKNKEHFTIQIALQ 240 AGRIDGGGHFRIFWNIAIPV+TPAMATLGILNFM VWNDFFWPLVVLKN+E++TIQIALQ Sbjct: 181 AGRIDGGGHFRIFWNIAIPVVTPAMATLGILNFMNVWNDFFWPLVVLKNRENYTIQIALQ 240 Query: 241 QLFTTRDGLDYGMIMSATFTATLPLLVVFLLFSRWVIAGLTSGAVKS 287 QLFT +DGLD+GMIMSATFTATLPLL+VFLLFSRWVIAGLTSGA+KS Sbjct: 241 QLFTNKDGLDFGMIMSATFTATLPLLIVFLLFSRWVIAGLTSGAIKS 287 >Q9KBK0.1 Q9KBK0_BACHD Sugar transport system (Permease) Length = 285 Score = 305 bits (780), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 148/269 (55%), Positives = 195/269 (72%), Gaps = 1/269 (0%) Query: 19 KFWFYVLMILGALVSIFPFYWMFVVGTNDKGAVFHVPPLLTIGDQFIDNFKRVLDKADFF 78 K Y+ +++ +L S+FPFY+MFV+ T + VPP T G ++NF++VLD DFF Sbjct: 18 KLAVYLFLLIASLASLFPFYYMFVMATRLNREINQVPPPFTPGRDLVNNFQKVLDNIDFF 77 Query: 79 QALGNSLFVSSMVTISVVFFCTLAGYAFAKYEFPFKNVLFYFVIATLFVPQQLGVLPTYV 138 A+ NSL VS+ VTI +F C+LAGYAFAK F KNVLF F++ T+ VP QLG++P Y Sbjct: 78 GAMWNSLVVSTSVTIGTLFLCSLAGYAFAKLAFKGKNVLFVFILITMMVPPQLGLIPQYY 137 Query: 139 IMAKLHWIDSFKALIVPAMVNAFGIFWMRQYISTAVHTELIEAGRIDGGGHFRIFWNIAI 198 I+ +L W++ ++A+IVP ++NAFGIFWMRQYI V TELIEA R+DG FRI+WNI + Sbjct: 138 IITELGWLNDYRAIIVPGLINAFGIFWMRQYIKEGVPTELIEAARMDGCSTFRIYWNIVV 197 Query: 199 PVITPAMATLGILNFMTVWNDFFWPLVVLKNKEHFTIQIALQQLFTTRDGLDYGMIMSAT 258 P+I PA ATLGI+ FM VWNDF WPLVVL++ T+Q+AL+ L R +DYGMIMS T Sbjct: 198 PMILPAFATLGIIVFMQVWNDFLWPLVVLRDPSMHTLQVALRSLNDARQ-MDYGMIMSGT 256 Query: 259 FTATLPLLVVFLLFSRWVIAGLTSGAVKS 287 F AT+PL++VFLLF+R I L+ GAVKS Sbjct: 257 FWATVPLIIVFLLFNRLFIDSLSEGAVKS 285 >A8VQG7.1 A8VQG7_9BACI Response regulator receiver protein Length = 279 Score = 298 bits (763), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 139/279 (49%), Positives = 198/279 (70%), Gaps = 1/279 (0%) Query: 9 KNPDDLGLFGKFWFYVLMILGALVSIFPFYWMFVVGTNDKGAVFHVPPLLTIGDQFIDNF 68 K+ L K Y+ + + +L S+FPFYWMFV+ TN + PP++ GD+ +DNF Sbjct: 2 KSEKQKTLISKILLYIGLSIVSLASLFPFYWMFVMATNSNEMINRTPPVMVPGDRLVDNF 61 Query: 69 KRVLDKADFFQALGNSLFVSSMVTISVVFFCTLAGYAFAKYEFPFKNVLFYFVIATLFVP 128 + VL+ FFQ + NSL ++ +T+ V+ ++AG+AFAK EFP +N+LF+F++ T+ +P Sbjct: 62 QNVLNSIPFFQTMLNSLIAATSITLGVLLLTSIAGFAFAKLEFPARNILFFFILGTMMIP 121 Query: 129 QQLGVLPTYVIMAKLHWIDSFKALIVPAMVNAFGIFWMRQYISTAVHTELIEAGRIDGGG 188 QLG++PTY I+ +L W+ +A+IVP ++NAFGIFWMRQY+++AV E+IEA RIDG Sbjct: 122 PQLGLIPTYFIITELGWLSDLRAVIVPGLMNAFGIFWMRQYVASAVPDEIIEAARIDGCS 181 Query: 189 HFRIFWNIAIPVITPAMATLGILNFMTVWNDFFWPLVVLKNKEHFTIQIALQQLFTTRDG 248 +FRI+WNI +PVI PA ATLGI+ FM VW D+ WPLVVL+++ TIQ+AL+ L R Sbjct: 182 NFRIYWNIVVPVILPAFATLGIIVFMFVWGDYLWPLVVLQDQSSQTIQVALRSLMDDRSR 241 Query: 249 LDYGMIMSATFTATLPLLVVFLLFSRWVIAGLTSGAVKS 287 DYGMI+S TF AT+PL+VVFL F++ I + GAVKS Sbjct: 242 -DYGMILSGTFWATVPLVVVFLFFNKLFIRSIADGAVKS 279 >B7GM30.1 B7GM30_ANOFW ABC-type sugar transport system, permease component Length = 279 Score = 294 bits (752), Expect = 7e-78, Method: Compositional matrix adjust. Identities = 143/275 (52%), Positives = 196/275 (71%), Gaps = 5/275 (1%) Query: 15 GLFGKFWFYVLMILGALVSIFPFYWMFVVGTNDKGAVFHVPPLLTIGDQFIDNFKRVLDK 74 G K +VL+I+GAL+S+FP YWMFV+ T + +PP + GD+ ++NF+ VL+ Sbjct: 8 GFVSKVTIHVLLIIGALLSVFPLYWMFVMATQPNHVINKLPPAVVPGDKLVENFRNVLEN 67 Query: 75 ADFFQALGNSLFVSSMVTISVVFFCTLAGYAFAKYEFPFKNVLFYFVIATLFVPQQLGVL 134 DFF A+ NS V+S+ T+ V+FF +LAG+AFAK +F + LF ++ T+ +P QLG++ Sbjct: 68 VDFFGAMWNSFIVASLTTLGVLFFSSLAGFAFAKLQFKGREKLFAVILITMMIPPQLGLI 127 Query: 135 PTYVIMAKLHWIDSFKALIVPAMVNAFGIFWMRQYISTAVHTELIEAGRIDGGGHFRIFW 194 P Y I+ KL W++ KA+IVP +VNAFGIFWMRQYI A+ ELIEA +IDG FR++W Sbjct: 128 PQYFIITKLGWLNDLKAIIVPGLVNAFGIFWMRQYIKDAIPDELIEAAKIDGCSIFRVYW 187 Query: 195 NIAIPVITPAMATLGILNFMTVWNDFFWPLVVLKNKEHFTIQIALQQLFTTRDGL--DYG 252 NI +P I PA ATLGIL FM VWNDF WPL VL+++ +TIQIA++ L +D DYG Sbjct: 188 NIVVPSILPAFATLGILTFMFVWNDFLWPLTVLRDESSYTIQIAIRAL---QDAYVKDYG 244 Query: 253 MIMSATFTATLPLLVVFLLFSRWVIAGLTSGAVKS 287 MI+S TF ATLPL+VVFL+F++ I+ LT G+VK Sbjct: 245 MILSGTFWATLPLVVVFLMFNKLFISSLTQGSVKQ 279 >C0UYT0.1 C0UYT0_9BACT Carbohydrate ABC transporter membrane protein 2, CUT1 family Length = 275 Score = 287 bits (734), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 136/265 (51%), Positives = 188/265 (70%), Gaps = 1/265 (0%) Query: 23 YVLMILGALVSIFPFYWMFVVGTNDKGAVFHVPPLLTIGDQFIDNFKRVLDKADFFQALG 82 ++L++LG ++SIFPFYW+ V+ TN G +F PP LT GDQ + N + V +F + Sbjct: 12 HILLLLGVVISIFPFYWLVVMSTNTTGDIFRYPPKLTFGDQLVTNVQHVFQSINFLDSFI 71 Query: 83 NSLFVSSMVTISVVFFCTLAGYAFAKYEFPFKNVLFYFVIATLFVPQQLGVLPTYVIMAK 142 N+L VS + TI ++ F +LAG+ FAK++FP KN+LF ++AT VP QL +P + IMA Sbjct: 72 NTLIVSVVTTILLLVFDSLAGFTFAKFDFPGKNILFLILLATFMVPGQLSTVPMFAIMAT 131 Query: 143 LHWIDSFKALIVPAMVNAFGIFWMRQYISTAVHTELIEAGRIDGGGHFRIFWNIAIPVIT 202 L W+ S KALI+P NAFGIFW+RQY AVH EL+EAGR+DG GHFR++W++ +P + Sbjct: 132 LGWVGSLKALIIPGAANAFGIFWIRQYAQEAVHDELLEAGRLDGCGHFRLWWHVGLPALR 191 Query: 203 PAMATLGILNFMTVWNDFFWPLVVLKNKEHFTIQIALQQLFTTRDGLDYGMIMSATFTAT 262 PA+A LGI +F+ WND+FWPLVVL N EH T+Q+AL QL + DY M+M+ T AT Sbjct: 192 PALAFLGIFSFIYTWNDYFWPLVVLINPEHITLQVALSQLNGIYNT-DYSMVMAGTLLAT 250 Query: 263 LPLLVVFLLFSRWVIAGLTSGAVKS 287 LPL+V+FLL S+ I+ LT+GAV+ Sbjct: 251 LPLIVIFLLGSQQFISDLTAGAVRE 275 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.332 0.145 0.464 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,703,406,387 Number of extensions: 69576748 Number of successful extensions: 230953 Number of sequences better than 1.0e-05: 5861 Number of HSP's gapped: 219791 Number of HSP's successfully gapped: 5862 Length of query: 287 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 153 Effective length of database: 1,798,280,193 Effective search space: 275136869529 Effective search space used: 275136869529 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (22.0 bits) S2: 130 (54.7 bits)