BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0580.0039.p (200 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K9E5.1 B3K9E5_9BACI Response regulator receiver 312 1e-83 C0Z4P4.1 C0Z4P4_BREBN Two-component response regulator 311 3e-83 A6CML7.1 A6CML7_9BACI Putative uncharacterized protein 285 1e-75 O34723.1 DESR_BACSU Transcriptional regulatory protein desR 280 4e-74 Q65GY4.1 Q65GY4_BACLD YocG 279 9e-74 >B3K9E5.1 B3K9E5_9BACI Response regulator receiver Length = 200 Score = 312 bits (799), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 152/200 (76%), Positives = 171/200 (85%) Query: 1 MIKIVIAEDQRMXXXXXXXXXXXXXXMKVVGRAANGEEAVKLVQQHQPDICIMDIEMPAM 60 MI+IVIAEDQR+ M+VVG A NG++AV+LV+ H PDICIMDIEMP M Sbjct: 1 MIRIVIAEDQRLLLGALASLLDLEEDMQVVGTAGNGKDAVQLVKLHMPDICIMDIEMPIM 60 Query: 61 SGLEAAEALKDSGCKIMILTTFARAGYFERAVKAGVDAYLLKDSPSEELALSIRSVMSGK 120 +GLEAAE +K GCK+MILTTFAR GYFERAVKAG +AYLLKDSPSEELA SIRS+M+G+ Sbjct: 61 NGLEAAEEIKGYGCKVMILTTFARPGYFERAVKAGANAYLLKDSPSEELAASIRSIMAGR 120 Query: 121 RLYAPELMDEAYSGEANPLTQREKEVLGLIADGKNTKEIASQLYITTGTVRNYISVILDK 180 R+YA EL+DEAYSGE NPLT+REKEVLGLIADGKNTKEIA+QL+ITTGTVRNYISVILDK Sbjct: 121 RIYASELVDEAYSGEENPLTEREKEVLGLIADGKNTKEIANQLFITTGTVRNYISVILDK 180 Query: 181 LDVGNRIEAITRFKEKGWFK 200 L V NRIEAITRFKEKGWFK Sbjct: 181 LGVSNRIEAITRFKEKGWFK 200 >C0Z4P4.1 C0Z4P4_BREBN Two-component response regulator Length = 199 Score = 311 bits (796), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 153/200 (76%), Positives = 169/200 (84%), Gaps = 1/200 (0%) Query: 1 MIKIVIAEDQRMXXXXXXXXXXXXXXMKVVGRAANGEEAVKLVQQHQPDICIMDIEMPAM 60 MI+IVIAEDQRM MKVVG+A+NGE+AVKLV QHQPDICIMDIEMP Sbjct: 1 MIRIVIAEDQRMLLGALASLLDLEEDMKVVGKASNGEDAVKLVHQHQPDICIMDIEMPVK 60 Query: 61 SGLEAAEALKDSGCKIMILTTFARAGYFERAVKAGVDAYLLKDSPSEELALSIRSVMSGK 120 SGL+AAE LK SGCK+MILTTFAR GYFERA+KAG + YLLKDSPSEELA SIRS+M+G+ Sbjct: 61 SGLDAAEELKGSGCKVMILTTFARPGYFERALKAGANGYLLKDSPSEELASSIRSIMAGR 120 Query: 121 RLYAPELMDEAYSGEANPLTQREKEVLGLIADGKNTKEIASQLYITTGTVRNYISVILDK 180 R+YAPEL+DEAY G+ NPLT+REKEVL L+ADGKNTKEIASQLYITTGTVRNYISVILDK Sbjct: 121 RIYAPELVDEAY-GQENPLTEREKEVLLLVADGKNTKEIASQLYITTGTVRNYISVILDK 179 Query: 181 LDVGNRIEAITRFKEKGWFK 200 L V NRIEAI KEKGWFK Sbjct: 180 LGVSNRIEAIMHSKEKGWFK 199 >A6CML7.1 A6CML7_9BACI Putative uncharacterized protein Length = 199 Score = 285 bits (730), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 141/200 (70%), Positives = 167/200 (83%), Gaps = 1/200 (0%) Query: 1 MIKIVIAEDQRMXXXXXXXXXXXXXXMKVVGRAANGEEAVKLVQQHQPDICIMDIEMPAM 60 MIKIVIAEDQ+M M+VVG+A+NGEEA++LV++ QPD+CIMDIEMP Sbjct: 1 MIKIVIAEDQQMLLGAFGSLLDLEDDMEVVGKASNGEEALRLVREFQPDVCIMDIEMPGK 60 Query: 61 SGLEAAEALKDSGCKIMILTTFARAGYFERAVKAGVDAYLLKDSPSEELALSIRSVMSGK 120 +GL+AAE LK +GCKI+ILTTFARAGYF+RA++AGV+ YLLKDSPSE+LA SIR+VMSGK Sbjct: 61 TGLDAAEELKGTGCKIIILTTFARAGYFQRAIRAGVNGYLLKDSPSEDLADSIRTVMSGK 120 Query: 121 RLYAPELMDEAYSGEANPLTQREKEVLGLIADGKNTKEIASQLYITTGTVRNYISVILDK 180 R+YAPEL+++AY GE NPLT RE EVL L+ADGKNTKEIA +L I TGTVRNYIS ILDK Sbjct: 121 RVYAPELIEDAY-GEGNPLTVREIEVLELVADGKNTKEIADELSIKTGTVRNYISTILDK 179 Query: 181 LDVGNRIEAITRFKEKGWFK 200 L V NRIEAIT+ KEKGWFK Sbjct: 180 LQVKNRIEAITQSKEKGWFK 199 >O34723.1 DESR_BACSU Transcriptional regulatory protein desR Length = 199 Score = 280 bits (717), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 138/200 (69%), Positives = 162/200 (81%), Gaps = 1/200 (0%) Query: 1 MIKIVIAEDQRMXXXXXXXXXXXXXXMKVVGRAANGEEAVKLVQQHQPDICIMDIEMPAM 60 MI I IAEDQ+M M+VVG+ G++AV V++ QPD+CIMDIEMP Sbjct: 1 MISIFIAEDQQMLLGALGSLLNLEDDMEVVGKGTTGQDAVDFVKKRQPDVCIMDIEMPGK 60 Query: 61 SGLEAAEALKDSGCKIMILTTFARAGYFERAVKAGVDAYLLKDSPSEELALSIRSVMSGK 120 +GLEAAE LKD+GCKI+ILTTFAR GYF+RA+KAGV YLLKDSPSEELA +IRSVM+GK Sbjct: 61 TGLEAAEELKDTGCKIIILTTFARPGYFQRAIKAGVKGYLLKDSPSEELANAIRSVMNGK 120 Query: 121 RLYAPELMDEAYSGEANPLTQREKEVLGLIADGKNTKEIASQLYITTGTVRNYISVILDK 180 R+YAPELM++ YS EANPLT REKEVL L+ADGKNTKEIA +L I +GTVRNYIS+IL+K Sbjct: 121 RIYAPELMEDLYS-EANPLTDREKEVLELVADGKNTKEIAQELSIKSGTVRNYISMILEK 179 Query: 181 LDVGNRIEAITRFKEKGWFK 200 L+V NRIEAITR KEKGWFK Sbjct: 180 LEVKNRIEAITRSKEKGWFK 199 >Q65GY4.1 Q65GY4_BACLD YocG Length = 199 Score = 279 bits (714), Expect = 9e-74, Method: Compositional matrix adjust. Identities = 137/200 (68%), Positives = 160/200 (80%), Gaps = 1/200 (0%) Query: 1 MIKIVIAEDQRMXXXXXXXXXXXXXXMKVVGRAANGEEAVKLVQQHQPDICIMDIEMPAM 60 MI I IAEDQ+M M+VVG+ G++AV ++H+PDICIMDIEMP Sbjct: 1 MISIFIAEDQQMLLGALGSLLNLEDDMEVVGKGTTGQDAVDFTKKHRPDICIMDIEMPGK 60 Query: 61 SGLEAAEALKDSGCKIMILTTFARAGYFERAVKAGVDAYLLKDSPSEELALSIRSVMSGK 120 +GLEAAE LKD+GC I+ILTTFAR GYF+RA+KAGV YLLKDSPSEELA +IRSVM GK Sbjct: 61 TGLEAAEELKDTGCNIIILTTFARPGYFQRAIKAGVKGYLLKDSPSEELASAIRSVMKGK 120 Query: 121 RLYAPELMDEAYSGEANPLTQREKEVLGLIADGKNTKEIASQLYITTGTVRNYISVILDK 180 R+YAPELM++ YS EANPLT REKEVL L+ADGKNTKEIA +L I +GTVRNYIS+IL+K Sbjct: 121 RIYAPELMEDMYS-EANPLTDREKEVLELVADGKNTKEIAQELSIKSGTVRNYISMILEK 179 Query: 181 LDVGNRIEAITRFKEKGWFK 200 L+V NRIEAITR KEKGWFK Sbjct: 180 LEVKNRIEAITRSKEKGWFK 199 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.133 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 981,282,778 Number of extensions: 36016591 Number of successful extensions: 203243 Number of sequences better than 1.0e-05: 8490 Number of HSP's gapped: 203764 Number of HSP's successfully gapped: 8503 Length of query: 200 Length of database: 3,060,696,203 Length adjustment: 129 Effective length of query: 71 Effective length of database: 1,845,385,268 Effective search space: 131022354028 Effective search space used: 131022354028 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)