BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0580.0038.p (499 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B2A8K9.1 B2A8K9_NATTJ Polysaccharide biosynthesis protein 135 1e-29 B8D011.1 B8D011_HALOH Polysaccharide biosynthesis protein 132 6e-29 C4V2B6.1 C4V2B6_9FIRM Stage V sporulation protein B 132 7e-29 B7AZA2.1 B7AZA2_9FIRM Putative uncharacterized protein 131 1e-28 Q0B0R6.1 Q0B0R6_SYNWW Stage V sporulation protein B 131 1e-28 >B2A8K9.1 B2A8K9_NATTJ Polysaccharide biosynthesis protein Length = 534 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 116/415 (27%), Positives = 215/415 (51%), Gaps = 25/415 (6%) Query: 9 RQSAIRAFALFIVKLTGLIGRVILTRIVGAEGIGLYQIAYSFYGFVL-MFTGGLPTTLAM 67 + +AI A + KL G R+ L+RI+ AEG+GLY++AY Y +L M G+P ++ Sbjct: 7 KGAAILMAAGVVSKLLGAFYRIPLSRIIEAEGMGLYEMAYPIYSLLLIMAVSGVPIAVSK 66 Query: 68 ASAKKPAQ--SWSLLKIISLGVILF---GGIVSMAVFWNSPAISR-FLGNPGLEYSIRGL 121 +++ AQ L++ ++ ++ G S +++ + IS FLG+ + YS+R + Sbjct: 67 LVSEQIAQGKEKERLRVFAVSLVFLFITGSFFSGLMYFLAEPISYGFLGDYRVIYSLRAI 126 Query: 122 APSXXXLFAVPLLGLVRGYLQGHKQIGVIALSEIIEQASRIFFMLLIVWHVLPLGINRAI 181 +P+ + V L+ RGY QG + + A+S++ EQ R+ ML + + ++ GI Sbjct: 127 SPA---ILIVSLMAAFRGYFQGLRIMSATAISQVTEQFVRVITMLALAYVLVERGIAYGA 183 Query: 182 GSGLYGTFIGALSAFSLLTIYIS--------VNKTSLPYNTSYTVQSLP-IFWFIQSSLM 232 +G G LS ++ + I +N +T V+S+P + + ++ Sbjct: 184 AGATFGAVTGGLSGLIIMLLLIPLYGVGPGLLNFFKAILSTLNLVRSVPLVIRLLSIAIP 243 Query: 233 ISATRLIIPASEFIDAVLIPNRLLAAGYSTSEATSMYGVIYGMAVIVAYAPTLLTGALCH 292 +S L++P + +DA++IP RL AG+S SEAT +YG + GMA+ + PT L+ AL + Sbjct: 244 VSLGALVMPVMQTLDAMIIPQRLQVAGFSPSEATHLYGYLSGMALRLVSLPTTLSLALGY 303 Query: 293 TLSVQIAAEWQQGNMQRFNRLSA---TAFKVCWLWGIATALFLKGYAPELSLFIFNTETA 349 +L + A + +++F+ + + A ++ +++ I +++ L A L+L +F E A Sbjct: 304 SL---VPALAESTALKKFDLVRSQLGKAIRLTFIFSIPSSVGLFVMAERLTLLLFGYEGA 360 Query: 350 GPAIKYLAAIPLLVGFREISTSILWSQDIRKSPFYGLLTGIICATAAQYFLVGIP 404 G +++LAA + + F+++S S L P L G + Y+L IP Sbjct: 361 GDPLRFLAAGTIFLSFQQVSASALQGTGYPVLPVKNLCYGALVNLVINYYLTAIP 415 >B8D011.1 B8D011_HALOH Polysaccharide biosynthesis protein Length = 539 Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 116/423 (27%), Positives = 204/423 (48%), Gaps = 20/423 (4%) Query: 2 NGSRXXXRQSAIRAFALFIVKLTGLIGRVILTRIVGAEGIGLYQIAYSFYGFVLMFT-GG 60 + + + + I + A I K+ G + RVILTRI+GAEG+GLYQ+AY Y +L+ + G Sbjct: 4 DKGKNFIKGAVILSAAGLISKVMGFVYRVILTRIIGAEGMGLYQMAYPIYTTLLVVSRSG 63 Query: 61 LPTTLAMASAKKPA--QSWSLLKIISLG------VILFGGIVSMAVFWNSPAISRFLGNP 112 +P +LA + K A Q LK +G + LF I+ M + P ++ + Sbjct: 64 IPVSLAKLISGKIARGQKNDALKTFKVGRSLSILIGLFFSILMMVL--ARPLVNILEWDS 121 Query: 113 GLEYSIRGLAPSXXXLFAVPLLGLVRGYLQGHKQIGVIALSEIIEQASRIFFMLLIVWHV 172 Y++ ++P+ +F V ++ RG+ QG + + A S++IEQ R+ M+ +V+ + Sbjct: 122 RAYYAVLAISPA---IFFVSIMATYRGFFQGLQNMKPTAYSQVIEQWVRMVTMISLVYFL 178 Query: 173 LPLGINRAIGSGLYGTFIGALSAFSLLTIYISVNKTSLPYN-----TSYTVQSLPIFWFI 227 +P G+ A G G+++ L IYI K +N T+Y Sbjct: 179 VPYGLGIAAAGATSGAVTGSMAGL-LTLIYIYYKKKKEIWNGISIKTTYADAVRITGEIA 237 Query: 228 QSSLMISATRLIIPASEFIDAVLIPNRLLAAGYSTSEATSMYGVIYGMAVIVAYAPTLLT 287 + + I+ L+ P +D V++P RL AGY+ +AT ++G + G+A+++ PT++T Sbjct: 238 RLGIPITFAALVQPLMTLVDTVIVPQRLQVAGYAVEKATELFGQLSGVAMVLVNFPTIIT 297 Query: 288 GALCHTLSVQIAAEWQQGNMQRFNRLSATAFKVCWLWGIATALFLKGYAPELSLFIFNTE 347 +L +L I+ + +R + TA ++ L G+ A+ L A L+ IF Sbjct: 298 ISLAASLVPSISEAYALKRHDLIDRRTRTALRLTVLIGLPAAVGLFILARPLTGVIFGEA 357 Query: 348 TAGPAIKYLAAIPLLVGFREISTSILWSQDIRKSPFYGLLTGIICATAAQYFLVGIPGFG 407 A ++ + + + ++ +++IL P LLTG + Y L P FG Sbjct: 358 DAAIPLRIVGWGVIFIAIQQTTSAILQGLGQTAIPARNLLTGAVVNALINYSLTASPRFG 417 Query: 408 YKG 410 KG Sbjct: 418 IKG 420 >C4V2B6.1 C4V2B6_9FIRM Stage V sporulation protein B Length = 545 Score = 132 bits (333), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 113/418 (27%), Positives = 210/418 (50%), Gaps = 37/418 (8%) Query: 19 FIVKLTGLIGRVILTRIVGAEGIGLYQIAYSFYGFVLMFT-GGLPTTLAMASAKKPA--- 74 F+VK+ G + + ++RI+G EGIGLYQ+A+ Y F + + G+P +++ +A++ A Sbjct: 26 FVVKVIGSLNWIFVSRILGGEGIGLYQMAFPIYFFAMTVSQAGVPVAISIITAERVALKD 85 Query: 75 --QSWSLLKIISLGVILFGGIVSMAVFWNSPAIS--RFLGNPGLEYSIRGLAPSXXXLFA 130 + + +I L ++L G + S+ + + + + + + ++ LAP+ +F Sbjct: 86 IYGAKRVFRISMLLMVLTGLLFSILTYLAADWLIEWQLIRDARAYKAVVVLAPT---VFF 142 Query: 131 VPLLGLVRGYLQGHKQIGVIALSEIIEQASRIFFMLLIVWHVLPLGINRAIGSGLYGTFI 190 V LL RGYLQG +++ A+S+I+EQ R+ M+++ ++P G++ A G F Sbjct: 143 VTLLASSRGYLQGWQRMTPTAVSQIVEQIFRVVTMIVLASLLMPWGLDYAAAGASLGAFA 202 Query: 191 GALSAFSLLT-IYISVNKT-------------SLPYNTSYTVQSLPIFWFIQSSLMISAT 236 GA++ +L +I + + ++PY T ++ I + +L +SA Sbjct: 203 GAVTGLIVLVYFHIKLERDIVRDYGTDLRPLPNVPYETRLSI----IHRIFKLALPVSAA 258 Query: 237 RLIIPASEFIDAVLIPNRLLAAGYSTSEATSMYGVIYGMAVIVAYAPTLLTGALCHTLSV 296 +++P +D +++P RL AAGYS SEAT ++G + GMAV + T+LT ++ ++ Sbjct: 259 SIMLPVVSNLDLMIVPQRLEAAGYSISEATELFGYLNGMAVPLVNLATILTASMAMSIVP 318 Query: 297 QIAAEWQQGNMQRFNRLSATAFKVCWLWGIATALFLKGYAPELSLFIFNTETAGPAIKYL 356 I+ G+ R +A + ++ + + A +S I+N AGPA+ Sbjct: 319 AISESRVLGDQARVYDQTAASVRISNFVCFPAFVIVFVLATPISSLIYNAPGAGPAVMIS 378 Query: 357 AAIPLLVGFREISTSILWSQDIRKSPFYGLLTGIICATAAQYF----LVGIPGFGYKG 410 A +L+G ++ST IL P + ++ A AA+ F L IP G G Sbjct: 379 AVSIILLGLHQVSTGILQGLGHPTIP----MVNMVLAAAAKIFLNWHLTAIPWLGIMG 432 >B7AZA2.1 B7AZA2_9FIRM Putative uncharacterized protein Length = 572 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 110/413 (26%), Positives = 203/413 (49%), Gaps = 27/413 (6%) Query: 19 FIVKLTGLIGRVILTRIVGAEGIGLYQIAYSFYGFVLMFT-GGLPTTLAMASAKKPA--Q 75 F+VK+ G + + ++RI+G EGIGLYQ+A+ Y F + + G+P +++ +A++ A Sbjct: 53 FVVKVIGSLNWIFVSRILGGEGIGLYQMAFPIYFFAMTVSQAGVPVAISIITAERVALKD 112 Query: 76 SWSLLKI--ISLGVILFGGIV-SMAVFWNSPAIS--RFLGNPGLEYSIRGLAPSXXXLFA 130 + ++ IS+G++L G++ S+ ++ + + F+ + S+ LAP+ +F Sbjct: 113 IYGAKRVFRISMGLMLVTGLLFSVLTYFAADWLIEWHFIRDARAYLSMVVLAPT---VFF 169 Query: 131 VPLLGLVRGYLQGHKQIGVIALSEIIEQASRIFFMLLIVWHVLPLGINRAIGSGLYGTFI 190 V LL RGYLQG +++ A+S+I+EQ R+ M+L+ LP G+ A G F Sbjct: 170 VTLLAASRGYLQGWQRMTPTAVSQIVEQIFRVITMILLAQLFLPWGLEYASAGASLGAFA 229 Query: 191 GALSAFSLLTIYISVNKTSLPYNTSYTVQSLP-------------IFWFIQSSLMISATR 237 GA++ +L Y + + + ++ LP IF SL +SA Sbjct: 230 GAVTGLIVLVYYHWKLDRDIERDYGHDIKPLPGTEHEPVLKIMRRIFML---SLPVSAAS 286 Query: 238 LIIPASEFIDAVLIPNRLLAAGYSTSEATSMYGVIYGMAVIVAYAPTLLTGALCHTLSVQ 297 +++P +D +++P RL AGYS +EAT ++G + GMAV + ++T ++ ++ Sbjct: 287 IMLPVVSNLDLMIVPQRLEVAGYSVNEATELFGYLTGMAVPLVNLSCIITASMAMSIVPA 346 Query: 298 IAAEWQQGNMQRFNRLSATAFKVCWLWGIATALFLKGYAPELSLFIFNTETAGPAIKYLA 357 I+ +M+R +A + ++ + + A +S I+N AGPA+ A Sbjct: 347 ISEARALRDMKRVYNQTAASVRISNFVCFPAFVIVFVLATPISSLIYNAPGAGPAVMISA 406 Query: 358 AIPLLVGFREISTSILWSQDIRKSPFYGLLTGIICATAAQYFLVGIPGFGYKG 410 +L+G ++ST IL P ++ + L +P G G Sbjct: 407 FSIVLLGLHQVSTGILQGLGHPTIPMVNMILAAAAKVILNWELTALPWLGIMG 459 >Q0B0R6.1 Q0B0R6_SYNWW Stage V sporulation protein B Length = 517 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 107/405 (26%), Positives = 206/405 (50%), Gaps = 19/405 (4%) Query: 20 IVKLTGLIGRVILTRIVGAEGIGLYQIAYSFYGFVL-MFTGGLPTTLAMASAKKPAQSWS 78 I K+ G I R+ L R++G EG+GLYQ+AY Y +L + T G+P +++ ++K Q +S Sbjct: 20 ISKIMGAIYRIPLARLIGGEGMGLYQMAYPIYTTILSLATAGVPVAISVLVSRKETQGYS 79 Query: 79 -----LLKIISLGVILFGGIVSMAVFWNSPAISR-FLGNPGLEYSIRGLAPSXXXLFAVP 132 + ++ L +++FG ++++ V ++ I+ L P Y I +AP+ +F Sbjct: 80 GDSRKIFRVSLLILLVFGFLLTLLVMQSASFIANSVLKEPRAYYPILAVAPA---IFFAG 136 Query: 133 LLGLVRGYLQGHKQIGVIALSEIIEQASRIFFMLLIVWHVLPLGINRAIGSGLYGTFIGA 192 L+ + RGY QGH+ + A+S++IEQ R+ +L++ + + P G+ A +G +G Sbjct: 137 LMSVFRGYFQGHQSMIPTAVSQVIEQLFRVTAVLILAFLLFPRGLEYAAAGATFGAVVGG 196 Query: 193 L-SAFSLLTIYISVNKTS------LPYNTSYTVQSLPIFWFIQSSLMISATRLIIPASEF 245 + LL Y S K L Y+ S +V+ ++ ++ +S +++P + Sbjct: 197 IIGLLVLLGYYYSFRKAQRRSGEMLAYSGSTSVELGQ--EMVRLAIPVSFGAVVLPLVQM 254 Query: 246 IDAVLIPNRLLAAGYSTSEATSMYGVIYGMAVIVAYAPTLLTGALCHTLSVQIAAEWQQG 305 +DA+++P RL+A GY+TS+AT++YG + GMA ++ PT+ T ++ +L ++ + Sbjct: 255 LDAIIVPGRLMATGYATSQATALYGELAGMAAVLISLPTIFTISIATSLVPAVSEALARN 314 Query: 306 NMQRFNRLSATAFKVCWLWGIATALFLKGYAPELSLFIFNTETAGPAIKYLAAIPLLVGF 365 + N F+ + + A L A + ++ T +AG ++ LA +++ Sbjct: 315 ERKLLNDRLNYGFRAGMIISLPCAAGLYVLAFPICDLLYATPSAGLPLEPLAFSCIVLAA 374 Query: 366 REISTSILWSQDIRKSPFYGLLTGIICATAAQYFLVGIPGFGYKG 410 ++S++ L + L+ + Y L GIP KG Sbjct: 375 FQLSSAGLQGIGKPQIAMRNLVITGVFKVIFNYSLTGIPMLNIKG 419 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.327 0.141 0.427 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,510,289,995 Number of extensions: 97896371 Number of successful extensions: 327252 Number of sequences better than 1.0e-05: 946 Number of HSP's gapped: 326062 Number of HSP's successfully gapped: 950 Length of query: 499 Length of database: 3,060,696,203 Length adjustment: 140 Effective length of query: 359 Effective length of database: 1,741,754,103 Effective search space: 625289722977 Effective search space used: 625289722977 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 133 (55.8 bits)