BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0580.0034.p (456 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KCC8.1 B3KCC8_9BACI Zinc finger SWIM domain protein 526 e-147 B1DLI2.1 B1DLI2_9BACL Zinc finger SWIM domain protein 397 e-109 C1QKP3.1 C1QKP3_CAPOC SWIM zinc finger-containing protein 315 6e-84 B0P982.1 B0P982_9FIRM Putative uncharacterized protein 275 7e-72 C3WU59.1 C3WU59_9FUSO Putative uncharacterized protein 247 2e-63 >B3KCC8.1 B3KCC8_9BACI Zinc finger SWIM domain protein Length = 476 Score = 526 bits (1356), Expect = e-147, Method: Compositional matrix adjust. Identities = 261/456 (57%), Positives = 318/456 (69%), Gaps = 5/456 (1%) Query: 1 VRKKSFIRLHTSENGELLFGQCAGSGKTPYECSVDFISPDNPVFRCTCPSRQFPCKHTLG 60 V+K F++LH SE+ +LFG CAGSG + Y+ S DF P+ PV RCTCPSRQFPCKH LG Sbjct: 26 VKKGRFLKLHHSEDQAVLFGTCAGSGSSDYQPSADFAVPEKPVMRCTCPSRQFPCKHVLG 85 Query: 61 LLYAYVEGQAFTPAPVPEDISSXXXXXXXXXXXXXXXXXGGAESKPKKVNKSALKKKINA 120 LLYAY G +FTPA VPED+++ GA KPKKVNKSALKKK+ A Sbjct: 86 LLYAYAGGASFTPAEVPEDLAAKREKAEKREERKLKEAAEGAAPKPKKVNKSALKKKLQA 145 Query: 121 QXXXXXXXXXXXXXXIRGGLSTIDSKTLKTVQEHVKQMGNYYLSGAQTQLRRFALLLGKG 180 Q IR GL T+D K K +QEHVKQMGNYYLSGAQT+LRR AL+L Sbjct: 146 QLEGLDVLEKLIHSLIRNGLGTLDKKEHKRIQEHVKQMGNYYLSGAQTELRRLALVLS-S 204 Query: 181 ENREESYTYAMEQLTRLHAFIKKARVYLTTRAEDPELALDHESTIDEWLGHAWQLSELKE 240 E++E++YTYA+ QL ++A IKK + +LTT+ EDP++ LDHESTI+EWLGHAWQL+EL+ Sbjct: 205 EDQEKAYTYAVGQLAVMNAMIKKGKQFLTTKLEDPDMRLDHESTIEEWLGHAWQLTELQS 264 Query: 241 YGLVKESVELLQLAFYSYDDPARQELVDLXXXYWLETASGAIHRTVNYRPYKAAKLMREE 300 YGLV E EL+QL+F SY D AR E VD YW++ SG IHRT+ YRPYKAAKLMREE Sbjct: 265 YGLVNEGAELVQLSFLSYADDARLEHVD--TGYWIQKDSGEIHRTIQYRPYKAAKLMREE 322 Query: 301 DSFFDLARIPLLYTYPGDMNVRVRYEEMTSRAVEAKDLERVAASANRSYAEALKKVKNQL 360 DSFFD A +P+LY YPGDMN RVR+EEMTS V +DLE + A SYAEA+KKVKNQL Sbjct: 323 DSFFDKAHVPVLYRYPGDMNRRVRFEEMTSSPVTEEDLEWIRNHAAGSYAEAVKKVKNQL 382 Query: 361 KNPLSDKTPVMLLHAASLGVTGSGQYVLTDDAGVQLVLDDIPSLPQGTLELLPFLPASAM 420 KNPLSD PVMLLH + +G GQY +TD++G + L D+ P T+ +L +LP + Sbjct: 383 KNPLSDSNPVMLLHVSGIGRNAEGQYAITDESGQSIGLADVYMEP--TVPMLRYLPEEKL 440 Query: 421 KNCCVLVMFEHLLDQGRLVAQPLTIIQDGAITRLLY 456 + +LVMFEH L GRL AQPL+II I RLLY Sbjct: 441 SSVSMLVMFEHNLATGRLWAQPLSIITTNEIIRLLY 476 >B1DLI2.1 B1DLI2_9BACL Zinc finger SWIM domain protein Length = 482 Score = 397 bits (1021), Expect = e-109, Method: Compositional matrix adjust. Identities = 200/460 (43%), Positives = 285/460 (61%), Gaps = 7/460 (1%) Query: 1 VRKKSFIRLHTSENGELLFGQCAGSGKTPYECSVDFISPDNPVFRCTCPSRQFPCKHTLG 60 V+K SF L +E+G LLFG+C GSGK PY CSVDF+ PDNPV RC+CPSRQFPCKHTLG Sbjct: 26 VKKNSFPVLRRTEDGTLLFGECKGSGKEPYRCSVDFVQPDNPVSRCSCPSRQFPCKHTLG 85 Query: 61 LLYAYVEGQAFTPAPVPEDISSXX---XXXXXXXXXXXXXXXGGAESKPKKVNKSALKKK 117 L+YAY G+ F A +P DI GA +KVNKSAL KK Sbjct: 86 LMYAYALGKPFEQAELPPDIEEKRGKAEKREEKKKETEAAVASGAAPAKRKVNKSALAKK 145 Query: 118 INAQXXXXXXXXXXXXXXIRGGLSTIDSKTLKTVQEHVKQMGNYYLSGAQTQLRRFALLL 177 INAQ ++GGL ++ K ++ +++ K++GNYY+ G Q +LR LL Sbjct: 146 INAQLEGLQLLEKIVLQTVQGGLGSLSKKNIQLLEDQAKELGNYYIPGVQAELRELILLF 205 Query: 178 GKGENREESYTYAMEQLTRLHAFIKKARVYLTTRAEDPELALDHESTIDEWLGHAWQLSE 237 NRE Y+ A+EQL R+H+ +KK + YL R +P++ LD E+T++E LGHAWQL+E Sbjct: 206 DDEGNRESVYSKAIEQLIRIHSLVKKGKAYLERRLAEPDMPLDTETTLEEQLGHAWQLAE 265 Query: 238 LKEYGLVKESVELLQLAFYSYDDPARQELVDLXXXYWLETASGAIHRTVNYRPYKAAKLM 297 LKEYG ++++ ELLQL+F SY D AR E VD +W + G +H T N RP++AAK + Sbjct: 266 LKEYGRMRQASELLQLSFLSYTDQARGEYVD--AGWWADLRDGTVHATRNLRPFRAAKQL 323 Query: 298 REEDSFFDLARIPLLYTYPGDMNVRVRYEEMTSRAVEAKDLERVAASANRSYAEALKKVK 357 +EED+ + + LY YPG++N RVR+E+ T R D + V +AN S+ + +K+VK Sbjct: 324 KEEDTVHAVVQTDELYQYPGEINARVRWEKGTFREAAVLDYKAVKGAANGSFPDVIKQVK 383 Query: 358 NQLKNPLSDKTPVMLLHAASLGVTGSGQYVLTDDAGVQL-VLDDIPSLPQGTLELLPFLP 416 N +KNPL+++ PV+L+ ++ +G G Y+ D G + V ++ + P ++P + Sbjct: 384 NIIKNPLANRNPVVLIAYHTIEKSGEG-YLFRDKQGKPIPVTSEMIATPARLDTIVPLMQ 442 Query: 417 ASAMKNCCVLVMFEHLLDQGRLVAQPLTIIQDGAITRLLY 456 +++ LVMF+H +D GRL AQP++II D I RLLY Sbjct: 443 EEELRDQAALVMFQHDVDSGRLSAQPMSIITDSRIVRLLY 482 >C1QKP3.1 C1QKP3_CAPOC SWIM zinc finger-containing protein Length = 481 Score = 315 bits (807), Expect = 6e-84, Method: Compositional matrix adjust. Identities = 185/463 (39%), Positives = 257/463 (55%), Gaps = 16/463 (3%) Query: 2 RKKSFIRLHTSENGELLFGQCAGSGKTPYECSVDFISPDNPVFRCTCPSRQFPCKHTLGL 61 +K F L + L++G+CAGSGK PY CS D+I PVFRC CPSRQFPCKH +GL Sbjct: 27 KKGKFTNLKINAEKNLIWGECAGSGKNPYYCSADYIDSHTPVFRCNCPSRQFPCKHAIGL 86 Query: 62 LYAY-VEGQAFTPAPVPEDISSXXXXXXXXXXXXXXXXXGGAE--SKPKKVNKSALKKKI 118 LY + + F+ VPEDI++ E KPKKVNK+A KK+ Sbjct: 87 LYCFEADKSQFSEGEVPEDITAKREKIEKRQEKKTQEKESIKEKADKPKKVNKTAFVKKV 146 Query: 119 NAQXXXXXXXXXXXXXXIRGGLSTIDSKTLKTVQEHVKQMGNYYLSGAQTQLRRFALLLG 178 + Q + GLS+ID+K T++ +K++GNYY+ G QT L Sbjct: 147 DTQLIGIDTAQKLLRDIVSTGLSSIDAKLRATLRTQIKELGNYYIGGIQTAFNNLLLS-- 204 Query: 179 KGENREESYTYAMEQLTRLHAFIKKARVYLTTRAEDPELALDHESTIDEWLGHAWQLSEL 238 E EE YT + L L A +KKA YL R EDPE + S I+E +G+ W+L EL Sbjct: 205 LEEVEEEEYTEVVNNLNYLSALLKKASEYLKARKEDPEGLPELSSAIEEQIGYVWKLVEL 264 Query: 239 KEYGLVKESVELLQLAFYSYDDPARQELVDLXXXYWLETASGAIHRTVNYRPYKAAKLMR 298 +YGL +E+ L+QL+F SYD+ AR+E VD WL +G I +T+NYRPYKAAK ++ Sbjct: 265 MQYGLYEENASLVQLSFNSYDNEARKEYVD--EGLWLNLTTGKIFKTMNYRPYKAAKYIK 322 Query: 299 EEDSFFDLARIPLLYTYPGDMNVRVRYE--EMTSRAVEAKDLERVAASANRSYAEALKKV 356 EE++ F + ++ LY YPGD N R+R+E +T R ++ DL + A+ +A+ +K V Sbjct: 323 EENTMFGVLQLKDLYIYPGDTNPRIRWEADSITERPLQKADLTTIKQWASTQFADTIKSV 382 Query: 357 KNQLKNPLSDKTPVMLLHAASLGVTGSGQYVLTDDAGVQLVLDDIPS---LPQGTLELLP 413 KN +KNPL DK PV+LL G V+ D G + L DI P G L+ Sbjct: 383 KNTIKNPLMDKHPVVLLALHKAYRVGE-DLVVEDANGFAITLKDIGEGAVSPTGNLK--A 439 Query: 414 FLPASAMKNCCVLVMFEHLLDQGRLVAQPLTIIQDGAITRLLY 456 FLP++A + + M + + G L AQP+++I I RLLY Sbjct: 440 FLPSNA-EGLTLTAMMHNDVASGLLSAQPMSLITPDKIIRLLY 481 >B0P982.1 B0P982_9FIRM Putative uncharacterized protein Length = 482 Score = 275 bits (703), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 169/459 (36%), Positives = 250/459 (54%), Gaps = 13/459 (2%) Query: 3 KKSFIRLHTSENGELLFGQCAGSGKTPYECSVDFISPDNPVFRCTCPSRQFPCKHTLGLL 62 + FI L SE+G L G C GSGK PY S DFI P PV RC+CPSRQ PCKH L LL Sbjct: 32 RGDFINLGKSEDGTYLCGDCKGSGKNPYHTSADFIDPAAPVLRCSCPSRQIPCKHALALL 91 Query: 63 YAYVEGQAFTPAPVPEDISSXXXXXXXXXXXXXXXXXGGAESKPKKVNKSALKKKINAQX 122 + G+ F P +PEDI + A++ KK N + L KK+ Q Sbjct: 92 MEALGGRTFAPCDIPEDILAKRGKLEQRKAAKAAGTD--AKAATKKTNTATLAKKMQKQL 149 Query: 123 XXXXXXXXXXXXXIRGGLSTIDSKTLKTVQEHVKQMGNYYLSGAQTQLRRFALLLGKGEN 182 I GGL+ + +++T + KQMG+YYL G Q + L L ++ Sbjct: 150 EGLSLADRFVSDVITGGLAALSGGSIQTYRSLAKQMGDYYLPGPQALINAILLELEALQD 209 Query: 183 ----REESYTYAMEQLTRLHAFIKKARVYLTTRAEDPELALDHESTIDEWLGHAWQLSEL 238 E+S +E L +LHA IKKAR +L + E ++++ +S + + +G+ WQLS+L Sbjct: 210 DPAREEDSRRRTIEILVQLHATIKKARAFLQGKVEGGAVSME-DSMLYDRIGYIWQLSQL 268 Query: 239 KEYGLVKESVELLQLAFYSYDDPARQELVDLXXXYWLETASGAIHRTVNYRPYKAAKLMR 298 E GL +++ L QL+F D AR E +D YW+E ++GA+++ N RP KA K ++ Sbjct: 269 DELGLYRDNAVLAQLSFTIEFDAARAEYID--TGYWVELSTGAVYKKENLRPLKAVKHIK 326 Query: 299 EEDSFFDLARIPLLYTYPGDMNVRVRYEEMTSRAVEAKDLERVAASANRSYAEALKKVKN 358 ++D+ + +IP LY YPG++N RVR+E TSR + D + A+A + A A+K+VKN Sbjct: 327 QDDTVLECLQIPRLYLYPGELNRRVRWESFTSRPLTPADCAAIRAAARTNLAVAVKEVKN 386 Query: 359 QLKNPLSDKTPVMLLHAASLGVTGSGQYVLTDDAGVQLVLDDIPSLPQGTLELLPFLP-A 417 Q+KN LS+KT V L+ +G T G L D G + L S P T L +LP A Sbjct: 387 QIKNALSEKTAVCLIAYEQIGQT-QGICALRDRTGATVELCGRGS-PSAT-ACLDYLPDA 443 Query: 418 SAMKNCCVLVMFEHLLDQGRLVAQPLTIIQDGAITRLLY 456 + ++N + F + +GR++ +PL+I+ I RL + Sbjct: 444 NLLENQVLAGRFFYDAKRGRILLEPLSIVSGDRIVRLSF 482 >C3WU59.1 C3WU59_9FUSO Putative uncharacterized protein Length = 479 Score = 247 bits (630), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 159/461 (34%), Positives = 233/461 (50%), Gaps = 23/461 (4%) Query: 5 SFIRLHTSENGELLFGQCAGSGKTPYECSVDFISPDNPVFRCTCPSRQFPCKHTLGLLYA 64 +F++L S + G+C GSGK+ Y S DFI +NPV RC+CPSRQFPCKH L LL+ Sbjct: 29 AFVKLAHSSDDTFYMGECKGSGKSNYIVSADFIDEENPVIRCSCPSRQFPCKHGLALLFE 88 Query: 65 YVEGQAFTPAPVPEDISSXXXXXXXXXXXXXXXXXGGAESK-PKKVNKSALKKKINAQXX 123 +G+ F +PEDI + E K P KV+K+A KKIN Q Sbjct: 89 IADGKTFEECEIPEDILAKREKKEKAKAKKESAEGTEKEKKAPSKVSKAARTKKINKQIE 148 Query: 124 XXXXXXXXXXXXIRGGLSTIDSKTLKTVQEHVKQMGNYYLSGAQTQLRRFALLLGKGENR 183 ++ GLST+ + +LK ++ VKQ+G+YYL G Q +R L + + + Sbjct: 149 GLDLIKKITSQLLKVGLSTMGTVSLKEYKDIVKQLGDYYLPGPQILFQRLMLEVQEYKED 208 Query: 184 EES--YTYAMEQLTRLHAFIKKARVYLTTRAEDPELALDHESTIDEWLGHAWQLSELKEY 241 +++ Y A+E L +L A KK R YL E L + ++T+ E LG W+L +L + Sbjct: 209 QDTRHYQQALECLKKLRAIEKKGREYLKAELEKENLEI-SDNTLYEDLGGVWKLEQLNDL 267 Query: 242 GLVKESVELLQLAFYSYDDPARQELVDLXXXYWLETASGAIHRTVNYRPYKAAKLMREED 301 GL KE+ L+QL+F D A + +D YW++ SG I T N RP A K ++++D Sbjct: 268 GLKKENARLIQLSFDVTYDEASKIFIDC--GYWIDIDSGEISYTANLRPLSAIKYIKQDD 325 Query: 302 SFFDLARIPLLYTYPGDMNVRVRYEEMTSRAVEAKDLERVAASANRSYAEALKKVKNQLK 361 S F L +P L YPG +N R+R+ +E +++ A +A K KN+LK Sbjct: 326 SNFSLLTVPTLTYYPGGLNKRIRWATANFGDIEKSSFKKIKTYAT-DIEQATKVAKNELK 384 Query: 362 NPLSDKTPVMLLHAASLGVT---GSGQYVLTDDAGVQLVLDDIPSLPQGTLEL----LPF 414 N L+D +LL + GS +Y+L D + L + G EL Sbjct: 385 NILTDNEVSLLLDFYKIMFIEEEGSKKYILVDKNQKMIELKN-----NGDRELAKVFYEL 439 Query: 415 LPASAMKNCCVLVMFEHLLDQGR-LVAQPLTIIQDGAITRL 454 LP ++N VMF L + R + A+P +II D I RL Sbjct: 440 LPNECLEN---QVMFVKLYQENRTMYAEPYSIITDDKIIRL 477 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.134 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,457,749,319 Number of extensions: 95645303 Number of successful extensions: 221706 Number of sequences better than 1.0e-05: 44 Number of HSP's gapped: 221625 Number of HSP's successfully gapped: 44 Length of query: 456 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 317 Effective length of database: 1,751,175,118 Effective search space: 555122512406 Effective search space used: 555122512406 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)