BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0580.0030.p
         (82 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KCD2.1 B3KCD2_9BACI VWA containing CoxE family protein               73   8e-12
C1QIF7.1 C1QIF7_CAPOC Putative uncharacterized protein                 66   9e-10
B1DLH8.1 B1DLH8_9BACL VWA containing CoxE family protein               59   1e-07
A8RS21.1 A8RS21_9CLOT Putative uncharacterized protein                 59   2e-07
C0ZTL3.1 C0ZTL3_RHOE4 Putative uncharacterized protein                 55   3e-06

>B3KCD2.1 B3KCD2_9BACI VWA containing CoxE family protein
          Length = 403

 Score = 73.2 bits (178), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 38/66 (57%), Positives = 44/66 (66%), Gaps = 1/66 (1%)

Query: 2   IMDSALAAIYDETXXXXXXXXXXXXXXXXAGTGHAAVHLSKWLGDVRSYFPEDVVSIIQS 61
           IMD ALAAIYD T                AG G +A  L++WLGDVRS+FPEDVVSIIQ+
Sbjct: 42  IMDRALAAIYDNTDGGTDAGGAPSGQRG-AGQGKSAPRLAQWLGDVRSFFPEDVVSIIQN 100

Query: 62  DAMERR 67
           DAMER+
Sbjct: 101 DAMERK 106


>C1QIF7.1 C1QIF7_CAPOC Putative uncharacterized protein
          Length = 209

 Score = 66.2 bits (160), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 44/66 (66%), Gaps = 5/66 (7%)

Query: 2  IMDSALAAIYDETXXXXXXXXXXXXXXXXAGTGHAAVHLSKWLGDVRSYFPEDVVSIIQS 61
          +MD+ LAA+YD+T                AG G ++ +L+KWL DVRS+FP DVVS+IQS
Sbjct: 30 LMDATLAALYDDTEGNGNNGGKRS-----AGLGSSSPNLAKWLTDVRSFFPPDVVSVIQS 84

Query: 62 DAMERR 67
          DA+ER+
Sbjct: 85 DAIERK 90


>B1DLH8.1 B1DLH8_9BACL VWA containing CoxE family protein
          Length = 411

 Score = 59.3 bits (142), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 42/72 (58%), Gaps = 5/72 (6%)

Query: 1   MIMDSALAAIYD-----ETXXXXXXXXXXXXXXXXAGTGHAAVHLSKWLGDVRSYFPEDV 55
           ++MD ALAAIY+                       AG G ++  L+KWLGDVR +FP DV
Sbjct: 41  LLMDEALAAIYEGEGTGSGAGLNGQGNGNTSGSRSAGLGTSSPKLAKWLGDVRHFFPPDV 100

Query: 56  VSIIQSDAMERR 67
           VS+IQ+DA+ER+
Sbjct: 101 VSVIQADAVERK 112


>A8RS21.1 A8RS21_9CLOT Putative uncharacterized protein
          Length = 403

 Score = 58.5 bits (140), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/68 (47%), Positives = 43/68 (63%), Gaps = 2/68 (2%)

Query: 1   MIMDSALAAIYDETXXXXXXXXXXXXX--XXXAGTGHAAVHLSKWLGDVRSYFPEDVVSI 58
           ++MD ALA+IY++T                  AG G +A  LSKWLGDVR+ F +++V+I
Sbjct: 35  LLMDQALASIYNQTDSGGFGDGAGKKVPGGRGAGNGPSAPVLSKWLGDVRTLFDKELVTI 94

Query: 59  IQSDAMER 66
           IQSDAMER
Sbjct: 95  IQSDAMER 102


>C0ZTL3.1 C0ZTL3_RHOE4 Putative uncharacterized protein
          Length = 387

 Score = 54.7 bits (130), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 7/64 (10%)

Query: 3  MDSALAAIYDETXXXXXXXXXXXXXXXXAGTGHAAVHLSKWLGDVRSYFPEDVVSIIQSD 62
          MD+ALAA+YD +                AG G +A  +++WLGD+R+YFP  VV ++Q D
Sbjct: 34 MDAALAALYDSSGPTKGRRRS-------AGLGASAPSVARWLGDIRTYFPSTVVQVMQKD 86

Query: 63 AMER 66
          A++R
Sbjct: 87 AIDR 90


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.320    0.131    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 286,384,249
Number of extensions: 6315028
Number of successful extensions: 12913
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 12908
Number of HSP's successfully gapped: 9
Length of query: 82
Length of database: 3,060,696,203
Length adjustment: 52
Effective length of query: 30
Effective length of database: 2,570,803,423
Effective search space: 77124102690
Effective search space used: 77124102690
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)