BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0580.0029.p (281 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KCD2.1 B3KCD2_9BACI VWA containing CoxE family protein 481 e-134 B1DLH8.1 B1DLH8_9BACL VWA containing CoxE family protein 404 e-111 B0P986.1 B0P986_9FIRM Putative uncharacterized protein 326 1e-87 C0FKL3.1 C0FKL3_9CLOT Putative uncharacterized protein 321 6e-86 A8RS21.1 A8RS21_9CLOT Putative uncharacterized protein 317 7e-85 >B3KCD2.1 B3KCD2_9BACI VWA containing CoxE family protein Length = 403 Score = 481 bits (1238), Expect = e-134, Method: Compositional matrix adjust. Identities = 229/279 (82%), Positives = 251/279 (89%) Query: 1 VKPDIQLVGTLLSLKGKIPEKTKDTARMXXXXXXXXXXXXXETDIRRAVTGALNKRQHSP 60 VKPDIQLVGTLLSLKGKIPEKTKDTAR DIRRAVTGALN+RQH+P Sbjct: 121 VKPDIQLVGTLLSLKGKIPEKTKDTARQLVKAVVDELVQRLHEDIRRAVTGALNRRQHTP 180 Query: 61 LPSLSGLDWKLTIQRNLKHYNQERRLIIPERFYYFDRARRSKEWTVIVDIDQSGSMASSI 120 LPSLSG+DWK TIQRNLK+Y+ +R+ I+PERFYYFDRA+RSKEWTVIVDIDQSGSMA S+ Sbjct: 181 LPSLSGIDWKRTIQRNLKNYDADRKQIVPERFYYFDRAKRSKEWTVIVDIDQSGSMAESV 240 Query: 121 IWASVIGSIFASIPALNTRVVVFDTEVVDLTEQCANDPVDMLFGIQLGGGTDIHKSVKYC 180 IWASV+GSIFASIP+L+TRVVVFDTEVVDLTEQCA+DPVDMLFGIQLGGGTDIHKSV YC Sbjct: 241 IWASVVGSIFASIPSLDTRVVVFDTEVVDLTEQCAHDPVDMLFGIQLGGGTDIHKSVAYC 300 Query: 181 EQFIEEPKKTLFIIVSDLYENGNQAGLVRRMRGLRESGVRTMTLLALSDEGKPSYDERLA 240 EQFIEEPKKTLFII+SDLYE GNQAGL+RRMR LRE+GV+TM LLALSDEGKP YDE++A Sbjct: 301 EQFIEEPKKTLFIIISDLYEGGNQAGLIRRMRELREAGVKTMCLLALSDEGKPFYDEQVA 360 Query: 241 GQLTRDGTPCFACTPALLPALVEGALKGQDLGELAKRLG 279 QL+RDGTPCFACTPALLP LVEGALKGQDL ELAKR+G Sbjct: 361 KQLSRDGTPCFACTPALLPQLVEGALKGQDLAELAKRIG 399 >B1DLH8.1 B1DLH8_9BACL VWA containing CoxE family protein Length = 411 Score = 404 bits (1037), Expect = e-111, Method: Compositional matrix adjust. Identities = 187/281 (66%), Positives = 235/281 (83%) Query: 1 VKPDIQLVGTLLSLKGKIPEKTKDTARMXXXXXXXXXXXXXETDIRRAVTGALNKRQHSP 60 VKPDI +V TL++L+G+IPE+TK+TAR E D+ RAVTGALN+RQHSP Sbjct: 127 VKPDIGMVATLMTLRGQIPERTKETARALVREVVDDIMKRLEQDLTRAVTGALNRRQHSP 186 Query: 61 LPSLSGLDWKLTIQRNLKHYNQERRLIIPERFYYFDRARRSKEWTVIVDIDQSGSMASSI 120 LPSLSGLDW TI++NLKHY+QERRL+IPE+ Y+FDRAR+SKEWTVI+DIDQSGSMA+S+ Sbjct: 187 LPSLSGLDWGATIRKNLKHYDQERRLLIPEKVYFFDRARKSKEWTVILDIDQSGSMANSV 246 Query: 121 IWASVIGSIFASIPALNTRVVVFDTEVVDLTEQCANDPVDMLFGIQLGGGTDIHKSVKYC 180 I+AS++GSIFAS+P+L T+VV FDTEVVDL+EQCA+DPVDMLFGIQLGGGTDI+KS++YC Sbjct: 247 IYASLVGSIFASMPSLETKVVAFDTEVVDLSEQCASDPVDMLFGIQLGGGTDINKSLQYC 306 Query: 181 EQFIEEPKKTLFIIVSDLYENGNQAGLVRRMRGLRESGVRTMTLLALSDEGKPSYDERLA 240 E FI EPKKT+FI+VSDLYE GN+ ++RR++ + ESGV+T+ LLALSD+G PSYDE +A Sbjct: 307 EPFITEPKKTIFILVSDLYEGGNRTEMIRRLKEMHESGVKTVCLLALSDDGVPSYDESVA 366 Query: 241 GQLTRDGTPCFACTPALLPALVEGALKGQDLGELAKRLGAS 281 +L + G PCF CTP L L+EGALKG DL +LA R+G + Sbjct: 367 KKLAQYGIPCFGCTPDKLAELIEGALKGMDLQQLADRMGQT 407 >B0P986.1 B0P986_9FIRM Putative uncharacterized protein Length = 405 Score = 326 bits (836), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 148/271 (54%), Positives = 205/271 (75%), Gaps = 1/271 (0%) Query: 1 VKPDIQLVGTLLSLKGKIPEKTKDTARMXXXXXXXXXXXXXETDIRRAVTGALNKRQHSP 60 ++PDI L TL++L+ +IP+++K++ R E DIRRAVT ALN+R HSP Sbjct: 126 LEPDIGLASTLMTLRDQIPKRSKESVRAFIKKIVEEINRMLENDIRRAVTAALNRRAHSP 185 Query: 61 LPSLSGLDWKLTIQRNLKHYNQERRLIIPERFYYFDRARRSKEWTVIVDIDQSGSMASSI 120 LPS + LD+KLTI+RNLK+YN + + I+PERF++FDR+ R+ WTVI+DIDQSGSM S+ Sbjct: 186 LPSAAALDYKLTIERNLKNYNPDLKTILPERFFFFDRSNRTNNWTVILDIDQSGSMGESV 245 Query: 121 IWASVIGSIFASIPALNTRVVVFDTEVVDLTEQCANDPVDMLFGIQLGGGTDIHKSVKYC 180 I++S++ I AS+ A+ TR+V FDT + DLTE+ ++DPVD+L+GIQLGGGTDI++SV YC Sbjct: 246 IFSSIMACILASMNAIKTRIVAFDTSITDLTEK-SDDPVDLLYGIQLGGGTDINRSVAYC 304 Query: 181 EQFIEEPKKTLFIIVSDLYENGNQAGLVRRMRGLRESGVRTMTLLALSDEGKPSYDERLA 240 +QFIE+P KTLF ++SDL E G+QA L+RR+ ++ SGV ++LLA+SD G P Y +A Sbjct: 305 QQFIEQPAKTLFFLISDLDEGGSQASLLRRLEDMKASGVTVISLLAVSDSGSPYYSAHMA 364 Query: 241 GQLTRDGTPCFACTPALLPALVEGALKGQDL 271 +++ G PCFACTP LLP L+E ALKG DL Sbjct: 365 QRVSALGIPCFACTPQLLPQLLEAALKGHDL 395 >C0FKL3.1 C0FKL3_9CLOT Putative uncharacterized protein Length = 399 Score = 321 bits (822), Expect = 6e-86, Method: Compositional matrix adjust. Identities = 154/283 (54%), Positives = 203/283 (71%), Gaps = 3/283 (1%) Query: 1 VKPDIQLVGTLLSLKGKIPEKTKDTARMXXXXXXXXXXXXXETDIRRAVTGALNKRQHSP 60 ++PD+ L TLL LK +IP+++KD+ R E D+RRAV A+N+R+HSP Sbjct: 117 LEPDMSLASTLLLLKDQIPKRSKDSVRAFIEKIVEEINRLLEQDVRRAVASAVNRRRHSP 176 Query: 61 LPSLSGLDWKLTIQRNLKHYNQERRLIIPERFYYFDRARRS--KEWTVIVDIDQSGSMAS 118 +PS S +D++ TIQR L++Y E + IIPE FY+FDR R+ TVI+D+DQSGSM Sbjct: 177 IPSASAMDFQRTIQRGLRNYRPEVKKIIPEHFYFFDRTSRTAANRHTVILDVDQSGSMGE 236 Query: 119 SIIWASVIGSIFASIPALNTRVVVFDTEVVDLTEQCANDPVDMLFGIQLGGGTDIHKSVK 178 S+I++SV+ I AS+ AL TR+V FDT VVDLTE+C+ DPVD+LFG QLGGGTDI +SV Sbjct: 237 SVIYSSVMSCILASMAALETRIVAFDTNVVDLTEKCS-DPVDLLFGFQLGGGTDIDRSVA 295 Query: 179 YCEQFIEEPKKTLFIIVSDLYENGNQAGLVRRMRGLRESGVRTMTLLALSDEGKPSYDER 238 YCE+FIE P KTLF ++SDL E GN+A L+RR+ LRESGV + LLA++D+GKP YD + Sbjct: 296 YCEKFIENPSKTLFFLISDLEEGGNRASLLRRLASLRESGVSVICLLAIADKGKPYYDAQ 355 Query: 239 LAGQLTRDGTPCFACTPALLPALVEGALKGQDLGELAKRLGAS 281 +AG++ G PCFAC P LPAL+E ALKGQDL K + S Sbjct: 356 MAGRIASLGIPCFACAPEKLPALLERALKGQDLTIFEKEISGS 398 >A8RS21.1 A8RS21_9CLOT Putative uncharacterized protein Length = 403 Score = 317 bits (812), Expect = 7e-85, Method: Compositional matrix adjust. Identities = 150/283 (53%), Positives = 204/283 (72%), Gaps = 3/283 (1%) Query: 1 VKPDIQLVGTLLSLKGKIPEKTKDTARMXXXXXXXXXXXXXETDIRRAVTGALNKRQHSP 60 ++PD+ L +L+LK +IP ++KD R DIRRAVT A+++R+HSP Sbjct: 118 LEPDMNLASMILALKDQIPGRSKDQVRAFISRIVEEINRLLADDIRRAVTAAVDRRRHSP 177 Query: 61 LPSLSGLDWKLTIQRNLKHYNQERRLIIPERFYYFDR--ARRSKEWTVIVDIDQSGSMAS 118 +PS + LD+K TI+RNLK+YN E + ++PE FY++DR + + ++TVI+D+DQSGSM Sbjct: 178 IPSAAALDYKDTIRRNLKNYNPELKRLVPEHFYFYDRTTSNAANKYTVILDVDQSGSMGE 237 Query: 119 SIIWASVIGSIFASIPALNTRVVVFDTEVVDLTEQCANDPVDMLFGIQLGGGTDIHKSVK 178 S+I++SVI I ASI ++ TR+V FDT++ DLTEQC DPVD+LFG QLGGGTDI KSV Sbjct: 238 SVIYSSVISCILASIASVKTRIVAFDTKITDLTEQC-EDPVDLLFGFQLGGGTDIEKSVA 296 Query: 179 YCEQFIEEPKKTLFIIVSDLYENGNQAGLVRRMRGLRESGVRTMTLLALSDEGKPSYDER 238 YC+QF+E P KTLF +VSDL E GN+AGL+RR+R ++ESGV + LLA++D GKP YDE+ Sbjct: 297 YCQQFMENPGKTLFFLVSDLMEGGNRAGLLRRIREMKESGVTVVCLLAIADGGKPYYDEQ 356 Query: 239 LAGQLTRDGTPCFACTPALLPALVEGALKGQDLGELAKRLGAS 281 +AG++ PCFAC P +P L+E ALKGQDL K L S Sbjct: 357 IAGRIASMDVPCFACNPQKMPELLERALKGQDLNAFQKELSRS 399 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.137 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,575,892,980 Number of extensions: 62771857 Number of successful extensions: 139916 Number of sequences better than 1.0e-05: 152 Number of HSP's gapped: 139648 Number of HSP's successfully gapped: 152 Length of query: 281 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 147 Effective length of database: 1,798,280,193 Effective search space: 264347188371 Effective search space used: 264347188371 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)