BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0580.0027.p
         (109 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K5U6.1 B3K5U6_9BACI Aspartate-semialdehyde dehydrogenase EC=1....   140   3e-32
B1DLC1.1 B1DLC1_9BACL Aspartate-semialdehyde dehydrogenase EC=1....   137   2e-31
B8I6S7.1 B8I6S7_CLOCE Aspartate-semialdehyde dehydrogenase            127   3e-28
Q2IMX6.1 Q2IMX6_ANADE Aspartate semialdehyde dehydrogenase EC=1....   126   7e-28
A9KHE6.1 A9KHE6_CLOPH Aspartate-semialdehyde dehydrogenase EC=1....   125   1e-27

>B3K5U6.1 B3K5U6_9BACI Aspartate-semialdehyde dehydrogenase EC=1.2.1.11
          Length = 347

 Score =  140 bits (354), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 66/85 (77%), Positives = 72/85 (84%)

Query: 1   VTDEGIVKSEQPVITTQCIRVPVADGHMAAVFASFEQKPSKEEILERWNSFQGRPQALGL 60
           V +  IVK+E P+ITTQCIRVPV DGH+A VFASFE KPSKEEIL+RW  F GRPQ L L
Sbjct: 211 VVNGEIVKAESPLITTQCIRVPVTDGHLATVFASFENKPSKEEILDRWQQFIGRPQELEL 270

Query: 61  PSAPKQFITYFAEENRPQTQLDRDI 85
           PSAPKQFITYF EENRPQT+LDRDI
Sbjct: 271 PSAPKQFITYFEEENRPQTKLDRDI 295


>B1DLC1.1 B1DLC1_9BACL Aspartate-semialdehyde dehydrogenase EC=1.2.1.11
          Length = 361

 Score =  137 bits (346), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 63/90 (70%), Positives = 71/90 (78%)

Query: 6   IVKSEQPVITTQCIRVPVADGHMAAVFASFEQKPSKEEILERWNSFQGRPQALGLPSAPK 65
           +VK+  P ITTQCIRVPV DGH+A VF +FE KPSKEEIL RW+ ++GRPQ LGLPSAPK
Sbjct: 230 VVKASSPQITTQCIRVPVTDGHLATVFVNFENKPSKEEILARWSEYKGRPQELGLPSAPK 289

Query: 66  QFITYFAEENRPQTQLDRDIXXXXXXXAFR 95
           QFITYF EENRPQT+LDRDI       A R
Sbjct: 290 QFITYFEEENRPQTKLDRDIEKGMGVSAGR 319


>B8I6S7.1 B8I6S7_CLOCE Aspartate-semialdehyde dehydrogenase
          Length = 361

 Score =  127 bits (320), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 57/84 (67%), Positives = 67/84 (79%)

Query: 1   VTDEGIVKSEQPVITTQCIRVPVADGHMAAVFASFEQKPSKEEILERWNSFQGRPQALGL 60
           V +  I K+  P+ITTQCIRVPV DGH+AAVF SFE KP+K EILE W +F+G PQ L L
Sbjct: 225 VNNGEIAKATSPLITTQCIRVPVTDGHLAAVFVSFENKPTKAEILESWKNFKGEPQLLEL 284

Query: 61  PSAPKQFITYFAEENRPQTQLDRD 84
           PSAPKQF+ YF E+NRPQT+LDRD
Sbjct: 285 PSAPKQFVKYFEEDNRPQTKLDRD 308


>Q2IMX6.1 Q2IMX6_ANADE Aspartate semialdehyde dehydrogenase EC=1.2.1.11
          Length = 362

 Score =  126 bits (316), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 55/79 (69%), Positives = 67/79 (84%)

Query: 6   IVKSEQPVITTQCIRVPVADGHMAAVFASFEQKPSKEEILERWNSFQGRPQALGLPSAPK 65
           IV ++ PVIT QCIRVP +DGHMAAVF SFE+KPSK+++LE W SF G+PQ LGLPSAPK
Sbjct: 231 IVAAQDPVITAQCIRVPASDGHMAAVFVSFERKPSKDDVLELWRSFSGKPQKLGLPSAPK 290

Query: 66  QFITYFAEENRPQTQLDRD 84
            F+ YF +E+RPQT+LDRD
Sbjct: 291 PFLQYFEDESRPQTRLDRD 309


>A9KHE6.1 A9KHE6_CLOPH Aspartate-semialdehyde dehydrogenase EC=1.2.1.11
          Length = 362

 Score =  125 bits (315), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 58/84 (69%), Positives = 66/84 (78%)

Query: 1   VTDEGIVKSEQPVITTQCIRVPVADGHMAAVFASFEQKPSKEEILERWNSFQGRPQALGL 60
           V D  IVK++ P+ITTQCIRVPV DGH AAVF SFE+KP KEEI+  WN ++G PQ L L
Sbjct: 224 VLDGEIVKADAPLITTQCIRVPVTDGHTAAVFVSFEKKPEKEEIIRAWNEYKGLPQELNL 283

Query: 61  PSAPKQFITYFAEENRPQTQLDRD 84
           PSAPKQFI YF E+NRPQ  LDRD
Sbjct: 284 PSAPKQFIKYFEEDNRPQAALDRD 307


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.319    0.133    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 607,475,109
Number of extensions: 22947407
Number of successful extensions: 37714
Number of sequences better than 1.0e-05: 150
Number of HSP's gapped: 37705
Number of HSP's successfully gapped: 150
Length of query: 109
Length of database: 3,060,696,203
Length adjustment: 77
Effective length of query: 32
Effective length of database: 2,335,278,048
Effective search space: 74728897536
Effective search space used: 74728897536
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 125 (52.8 bits)