BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0580.0022.p
         (137 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1D7Z5.1 B1D7Z5_9BACL Transcriptional regulator, MarR family          147   4e-34
C2XM25.1 C2XM25_BACCE Transcriptional regulator                        90   6e-17
C2ZQ30.1 C2ZQ30_BACCE Transcriptional regulator                        89   1e-16
C2Z8I3.1 C2Z8I3_BACCE Transcriptional regulator                        89   1e-16
C1P7A1.1 C1P7A1_BACCO Transcriptional regulator, MarR family           88   2e-16

>B1D7Z5.1 B1D7Z5_9BACL Transcriptional regulator, MarR family
          Length = 141

 Score =  147 bits (370), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 72/115 (62%), Positives = 88/115 (76%)

Query: 7   TIEVYQSFFAVARQLKRLAHQSAANLGLTVHQIGILNFLRQHPGQTQKEVTERLVFNKSR 66
            +++YQSFF + RQLK+LA  SAANLGLTVHQI IL  +R +PGQ QKE+TE+LVF KSR
Sbjct: 5   AMDIYQSFFRITRQLKKLAFHSAANLGLTVHQINILESVRLNPGQKQKELTEKLVFAKSR 64

Query: 67  VSLQIDTLALKGLVTRSVSELDRRETRLYLTEEGETLCLRYNEEAWSHKVLGEAL 121
           VS+ ID LALKGL+ R  SE DRRE +L++T  GE LC  YN+EA S+K L  AL
Sbjct: 65  VSVHIDQLALKGLLVREPSEQDRREIQLFITPAGEELCELYNQEAASYKALSSAL 119


>C2XM25.1 C2XM25_BACCE Transcriptional regulator
          Length = 151

 Score = 90.1 bits (222), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 48/115 (41%), Positives = 71/115 (61%)

Query: 9   EVYQSFFAVARQLKRLAHQSAANLGLTVHQIGILNFLRQHPGQTQKEVTERLVFNKSRVS 68
           EV QSF  + +++ +  HQ+A+NLGLTV Q+GILN +   P  T KE++ERL   KS VS
Sbjct: 13  EVVQSFVTINKEIIKFTHQNASNLGLTVQQMGILNTIYALPNVTLKEISERLSVPKSTVS 72

Query: 69  LQIDTLALKGLVTRSVSELDRRETRLYLTEEGETLCLRYNEEAWSHKVLGEALGQ 123
           + +D L    L+ R  S+ DRRE +L +T +G+    +  E + S+K +  AL Q
Sbjct: 73  VNVDELVNLQLIERKQSDEDRREIKLKVTNQGQEASKKSIENSTSYKAMELALQQ 127


>C2ZQ30.1 C2ZQ30_BACCE Transcriptional regulator
          Length = 151

 Score = 89.4 bits (220), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 46/119 (38%), Positives = 73/119 (61%)

Query: 5   EQTIEVYQSFFAVARQLKRLAHQSAANLGLTVHQIGILNFLRQHPGQTQKEVTERLVFNK 64
           +Q  E+  SF  + +++ +  HQ+A+ LGLTV Q+GILN +   P  T K+++ERL   K
Sbjct: 9   KQASEIVHSFVKINKEIIKFTHQNASTLGLTVQQMGILNSIYATPNTTLKDISERLSVPK 68

Query: 65  SRVSLQIDTLALKGLVTRSVSELDRRETRLYLTEEGETLCLRYNEEAWSHKVLGEALGQ 123
           S +S+ +D L   GL+ R  S  DRRE +L +T +G+ +  +  E + S+K +G AL Q
Sbjct: 69  STMSVNVDELVNLGLIERKQSHEDRREIQLKVTTQGQEISKKSIENSTSYKAMGLALEQ 127


>C2Z8I3.1 C2Z8I3_BACCE Transcriptional regulator
          Length = 151

 Score = 89.4 bits (220), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 46/119 (38%), Positives = 73/119 (61%)

Query: 5   EQTIEVYQSFFAVARQLKRLAHQSAANLGLTVHQIGILNFLRQHPGQTQKEVTERLVFNK 64
           +Q  E+  SF  + +++ +  HQ+A+ LGLTV Q+GILN +   P  T K+++ERL   K
Sbjct: 9   KQASEIVHSFVKINKEIIKFTHQNASTLGLTVQQMGILNSIYATPNTTLKDISERLSVPK 68

Query: 65  SRVSLQIDTLALKGLVTRSVSELDRRETRLYLTEEGETLCLRYNEEAWSHKVLGEALGQ 123
           S +S+ +D L   GL+ R  S  DRRE +L +T +G+ +  +  E + S+K +G AL Q
Sbjct: 69  STMSVNVDELVNLGLIERKQSHEDRREIQLKVTTQGQEISKKSIENSTSYKAMGLALEQ 127


>C1P7A1.1 C1P7A1_BACCO Transcriptional regulator, MarR family
          Length = 124

 Score = 88.2 bits (217), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 45/113 (39%), Positives = 71/113 (62%)

Query: 5   EQTIEVYQSFFAVARQLKRLAHQSAANLGLTVHQIGILNFLRQHPGQTQKEVTERLVFNK 64
           +Q +E+YQ   A+ +   +LA ++A N GL++ Q+ ILN L   P  TQ+E+ ERLV +K
Sbjct: 11  KQAMEIYQLLTAIGKFTAKLAKKNAENFGLSLQQLSILNTLLAFPESTQQELAERLVLSK 70

Query: 65  SRVSLQIDTLALKGLVTRSVSELDRRETRLYLTEEGETLCLRYNEEAWSHKVL 117
           S +S+ ID L   GL+ R +S  DRRE +L LT +GE L  + ++ A  ++ +
Sbjct: 71  STISVGIDKLVNMGLIERKLSTEDRREVKLQLTLKGEELAKKSSKNAIPYQAM 123


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.319    0.132    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 624,240,038
Number of extensions: 19516142
Number of successful extensions: 63013
Number of sequences better than 1.0e-05: 56
Number of HSP's gapped: 63218
Number of HSP's successfully gapped: 56
Length of query: 137
Length of database: 3,060,696,203
Length adjustment: 101
Effective length of query: 36
Effective length of database: 2,109,173,688
Effective search space: 75930252768
Effective search space used: 75930252768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 125 (52.8 bits)