BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0580.0016.p (293 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C5D2M9.1 C5D2M9_9BACI Phosphomethylpyrimidine kinase 341 4e-92 A4IN27.1 A4IN27_GEOTN Phosphomethylpyrimidine kinase 330 1e-88 B4BKC3.1 B4BKC3_9BACI Phosphomethylpyrimidine kinase 330 1e-88 C2ZK03.1 C2ZK03_BACCE Phosphomethylpyrimidine kinase 329 2e-88 C2Z3F4.1 C2Z3F4_BACCE Phosphomethylpyrimidine kinase 329 2e-88 >C5D2M9.1 C5D2M9_9BACI Phosphomethylpyrimidine kinase Length = 267 Score = 341 bits (875), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 173/263 (65%), Positives = 215/263 (81%) Query: 26 VFKALTVAGSDSGGGAGIQADLKTFQELGVYGMSALTAVTAQNTLGVQSVYPLEGEAVAA 85 V+KALT+AGSDSGGGAGIQADLKTFQEL V+GMSALTAVTAQNTLGVQ VYPL EAVA Sbjct: 2 VYKALTIAGSDSGGGAGIQADLKTFQELRVFGMSALTAVTAQNTLGVQGVYPLSPEAVAQ 61 Query: 86 QLDSIGADLTPDAVKTGMLFSSGLIHTVAQKFRQYGWTKLVIDPVMVAKGGSPLLQQEAV 145 Q++S+G DL DAVKTGMLFS+ +I VA K +Q+GW +LV+DPVM+AKGG+PLLQ+EAV Sbjct: 62 QIESVGTDLGADAVKTGMLFSAEIIEVVASKVKQFGWERLVVDPVMIAKGGAPLLQEEAV 121 Query: 146 QALIADLLPLSLAITPNIPEAEILTGMKISDMADREAAARLVHAMGPRHVILKGGHDEEG 205 AL LLPLS+ +TPNIPEAE LTG+ I + DR+ AA+ +H +G ++V++KGGHD++G Sbjct: 122 SALKTHLLPLSMVVTPNIPEAEALTGLTIRTIEDRKEAAKRLHELGVKYVVIKGGHDDDG 181 Query: 206 ALVTDLLYDGEKFIYLQSPRIATRHTHGTGCTFSAALTAGLAQGQRVPEAVHTAKAFIQA 265 D+LYDG +F Y S RI T+HTHGTGCTF+AA+TA LA+G+ V EAV TAK+FIQA Sbjct: 182 EETVDVLYDGSEFFYFTSKRIDTKHTHGTGCTFAAAITAELAKGKTVQEAVQTAKSFIQA 241 Query: 266 AIEDGINIGAGNGPTNHFAYQTR 288 AI + IG G+GPTNH+AY+ + Sbjct: 242 AISHELGIGHGHGPTNHWAYREK 264 >A4IN27.1 A4IN27_GEOTN Phosphomethylpyrimidine kinase Length = 267 Score = 330 bits (846), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 173/262 (66%), Positives = 216/262 (82%) Query: 25 NVFKALTVAGSDSGGGAGIQADLKTFQELGVYGMSALTAVTAQNTLGVQSVYPLEGEAVA 84 V+KALT+AGSDSGGGAGIQADLKTFQELGV+GMSA+TAVTAQNTLGVQ VYPL EAVA Sbjct: 2 TVYKALTIAGSDSGGGAGIQADLKTFQELGVFGMSAITAVTAQNTLGVQGVYPLSAEAVA 61 Query: 85 AQLDSIGADLTPDAVKTGMLFSSGLIHTVAQKFRQYGWTKLVIDPVMVAKGGSPLLQQEA 144 AQ++S+ DL DA+KTGMLFS+ +I TVA++ +++GW +LV+DPVM+AKGG+PLLQ+EA Sbjct: 62 AQIESVAVDLGVDALKTGMLFSADIIRTVAEQVKKHGWERLVVDPVMIAKGGAPLLQEEA 121 Query: 145 VQALIADLLPLSLAITPNIPEAEILTGMKISDMADREAAARLVHAMGPRHVILKGGHDEE 204 V AL LLPL+ ITPNIPEAE+LTG+ I M DR AARL+H MG R+V++KGGHD++ Sbjct: 122 VAALKEALLPLAFVITPNIPEAEVLTGIAIRTMDDRREAARLLHRMGARYVVIKGGHDDD 181 Query: 205 GALVTDLLYDGEKFIYLQSPRIATRHTHGTGCTFSAALTAGLAQGQRVPEAVHTAKAFIQ 264 G DLLY+G +F Y +S RI TRHTHGTGCTF+AA+ A LA+G+ +AV TAK+F+Q Sbjct: 182 GEETVDLLYNGSEFSYFKSKRIDTRHTHGTGCTFAAAVAAELAKGRHPVDAVGTAKSFVQ 241 Query: 265 AAIEDGINIGAGNGPTNHFAYQ 286 AAI + IG G+GPTNH+AY+ Sbjct: 242 AAISHSLGIGQGHGPTNHWAYR 263 >B4BKC3.1 B4BKC3_9BACI Phosphomethylpyrimidine kinase Length = 267 Score = 330 bits (846), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 173/262 (66%), Positives = 216/262 (82%) Query: 25 NVFKALTVAGSDSGGGAGIQADLKTFQELGVYGMSALTAVTAQNTLGVQSVYPLEGEAVA 84 V+KALT+AGSDSGGGAGIQADLKTFQELGV+GMSA+TAVTAQNTLGVQ VYPL EAVA Sbjct: 2 TVYKALTIAGSDSGGGAGIQADLKTFQELGVFGMSAITAVTAQNTLGVQGVYPLSAEAVA 61 Query: 85 AQLDSIGADLTPDAVKTGMLFSSGLIHTVAQKFRQYGWTKLVIDPVMVAKGGSPLLQQEA 144 AQ++S+ DL DA+KTGMLFS+ +I TVA++ +++GW +LV+DPVM+AKGG+PLLQ+EA Sbjct: 62 AQIESVAVDLGVDALKTGMLFSADIIRTVAEQVKKHGWERLVVDPVMIAKGGAPLLQEEA 121 Query: 145 VQALIADLLPLSLAITPNIPEAEILTGMKISDMADREAAARLVHAMGPRHVILKGGHDEE 204 V AL LLPL+ ITPNIPEAE+LTG+ I M DR AARL+H MG R+V++KGGHD++ Sbjct: 122 VAALKEALLPLAFVITPNIPEAEVLTGIAIRTMDDRREAARLLHRMGARYVVIKGGHDDD 181 Query: 205 GALVTDLLYDGEKFIYLQSPRIATRHTHGTGCTFSAALTAGLAQGQRVPEAVHTAKAFIQ 264 G DLLY+G +F Y +S RI TRHTHGTGCTF+AA+ A LA+G+ +AV TAK+F+Q Sbjct: 182 GEETVDLLYNGSEFSYFKSKRIDTRHTHGTGCTFAAAVAAELAKGRHPVDAVGTAKSFVQ 241 Query: 265 AAIEDGINIGAGNGPTNHFAYQ 286 AAI + IG G+GPTNH+AY+ Sbjct: 242 AAISHSLGIGQGHGPTNHWAYR 263 >C2ZK03.1 C2ZK03_BACCE Phosphomethylpyrimidine kinase Length = 273 Score = 329 bits (843), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 166/263 (63%), Positives = 215/263 (81%), Gaps = 1/263 (0%) Query: 25 NVFKALTVAGSDSGGGAGIQADLKTFQELGVYGMSALTAVTAQNTLGVQSVYPLEGEAVA 84 V KALT+AGSDSGGGAGIQADLKTFQELGVYGM+A+TA+TAQNTLGVQ VYP+ E + Sbjct: 5 KVNKALTIAGSDSGGGAGIQADLKTFQELGVYGMTAITAITAQNTLGVQGVYPVSLEGIT 64 Query: 85 AQLDSIGADLTPDAVKTGMLFSSGLIHTVAQKFRQYGWTKLVIDPVMVAKGGSPLLQQEA 144 QL+SIG DLTPDAVK GMLFSS +I VA+ +++GW +V+DPVM+AKGG+ LLQQEA Sbjct: 65 EQLNSIGTDLTPDAVKLGMLFSSEIIQIVAEHIKRFGWNNIVLDPVMIAKGGASLLQQEA 124 Query: 145 VQALIADLLPLSLAITPNIPEAEILTGMKISDMADREAAARLVHAMGPRHVILKGGHDE- 203 VQAL LLPL+ +TPN+PEAE+LTGM+I ++ D + AA+++H +G ++V++KGGH E Sbjct: 125 VQALKEYLLPLATVVTPNVPEAEVLTGMEIHNIDDSKEAAKVLHELGAKYVLMKGGHAEY 184 Query: 204 EGALVTDLLYDGEKFIYLQSPRIATRHTHGTGCTFSAALTAGLAQGQRVPEAVHTAKAFI 263 +G V DLL+DGE+FI +S RI ++ THG+GCTF++A+TAGLA+G + EAV AK FI Sbjct: 185 QGNEVIDLLFDGEEFIEFRSERIPSKQTHGSGCTFASAVTAGLAKGYSIEEAVQEAKQFI 244 Query: 264 QAAIEDGINIGAGNGPTNHFAYQ 286 AIE+ +NIG+G+GPTNHFAY+ Sbjct: 245 SIAIEEPLNIGSGHGPTNHFAYK 267 >C2Z3F4.1 C2Z3F4_BACCE Phosphomethylpyrimidine kinase Length = 273 Score = 329 bits (843), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 166/263 (63%), Positives = 215/263 (81%), Gaps = 1/263 (0%) Query: 25 NVFKALTVAGSDSGGGAGIQADLKTFQELGVYGMSALTAVTAQNTLGVQSVYPLEGEAVA 84 V KALT+AGSDSGGGAGIQADLKTFQELGVYGM+A+TA+TAQNTLGVQ VYP+ E + Sbjct: 5 KVNKALTIAGSDSGGGAGIQADLKTFQELGVYGMTAITAITAQNTLGVQGVYPVSLEGIT 64 Query: 85 AQLDSIGADLTPDAVKTGMLFSSGLIHTVAQKFRQYGWTKLVIDPVMVAKGGSPLLQQEA 144 QL+SIG DLTPDAVK GMLFSS +I VA+ +++GW +V+DPVM+AKGG+ LLQQEA Sbjct: 65 EQLNSIGTDLTPDAVKLGMLFSSEIIQIVAEHIKRFGWNNIVLDPVMIAKGGASLLQQEA 124 Query: 145 VQALIADLLPLSLAITPNIPEAEILTGMKISDMADREAAARLVHAMGPRHVILKGGHDE- 203 VQAL LLPL+ +TPN+PEAE+LTGM+I ++ D + AA+++H +G ++V++KGGH E Sbjct: 125 VQALKEYLLPLATVVTPNVPEAEVLTGMEIHNIDDSKEAAKVLHELGAKYVLMKGGHAEY 184 Query: 204 EGALVTDLLYDGEKFIYLQSPRIATRHTHGTGCTFSAALTAGLAQGQRVPEAVHTAKAFI 263 +G V DLL+DGE+FI +S RI ++ THG+GCTF++A+TAGLA+G + EAV AK FI Sbjct: 185 QGNEVIDLLFDGEEFIEFRSERIPSKQTHGSGCTFASAVTAGLAKGYSIEEAVQEAKQFI 244 Query: 264 QAAIEDGINIGAGNGPTNHFAYQ 286 AIE+ +NIG+G+GPTNHFAY+ Sbjct: 245 SIAIEEPLNIGSGHGPTNHFAYK 267 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.133 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,716,247,363 Number of extensions: 68561624 Number of successful extensions: 195023 Number of sequences better than 1.0e-05: 2010 Number of HSP's gapped: 191914 Number of HSP's successfully gapped: 2025 Length of query: 293 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 159 Effective length of database: 1,798,280,193 Effective search space: 285926550687 Effective search space used: 285926550687 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)