BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0580.0013.p (258 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C1PFG2.1 C1PFG2_BACCO Binding-protein-dependent transport system... 263 1e-68 A6CLP1.1 A6CLP1_9BACI Hydroxymethylpyrimidine transport system p... 220 8e-56 Q9K9G6.1 Q9K9G6_BACHD ABC transporter (Permease) 217 8e-55 C2PAK8.1 C2PAK8_BACCE ABC transporter, permease 211 4e-53 B7HDE7.1 B7HDE7_BACC4 Putative ABC transporter, permease protein 211 7e-53 >C1PFG2.1 C1PFG2_BACCO Binding-protein-dependent transport systems inner membrane component Length = 254 Score = 263 bits (672), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 128/248 (51%), Positives = 177/248 (71%) Query: 7 RTFLREYGPFALLVLLTLAAWECAARLKLVPAFILPAPTAIWKAMLDQRLLLFGEHLPAT 66 R +L +YG F + +L+ +A W+ + ++P+FILP+P+ I+ + ++ L HLPAT Sbjct: 4 RKWLGDYGLFCVTMLVLIAIWQWVIQKGMIPSFILPSPSQIYVSFMENHRQLINVHLPAT 63 Query: 67 LQEVLLGFALSVCCGVLLGTGMHMFSPLEKALYPLLVISQTIPLIALSPIFIMWFGYTLW 126 ++EV +GF LSV GV++G M++ EK YP LVISQTIPL+A+SP+F+MWFGY++W Sbjct: 64 VEEVGIGFLLSVAGGVMIGVIMYVSKTAEKIFYPFLVISQTIPLVAVSPVFMMWFGYSVW 123 Query: 127 SKVAVVFLTAFFPVVIGTYDGLHKRGAVYKELLLTLGANRWQILRKTQIPPALPSLFSGL 186 SKVA++ LTA FP+VI T+DGL Y L T+GA+RW I RK +P ALP SGL Sbjct: 124 SKVAIIVLTAIFPIVISTFDGLKTVDPAYLNLFRTMGASRWDIFRKLSVPMALPQFLSGL 183 Query: 187 KLSIVYCVIGATIGEWLGGSRGLGYFSRRMAGNLQSAEMFAAVFLLSALGIVLFLSIKLL 246 KLS+VYCV GA IGEWLG + GLG+FS+RM+G LQS +F+AVFLL+A G+ LFL I + Sbjct: 184 KLSVVYCVSGAAIGEWLGATAGLGFFSKRMSGYLQSDAVFSAVFLLAAFGMGLFLLIYGM 243 Query: 247 ENIILQKR 254 E +L+ R Sbjct: 244 EKGLLKNR 251 >A6CLP1.1 A6CLP1_9BACI Hydroxymethylpyrimidine transport system permease protein Length = 250 Score = 220 bits (561), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 113/236 (47%), Positives = 149/236 (63%), Gaps = 1/236 (0%) Query: 19 LVLLTLAAWECAARLKLVPAFILPAPTAIWKAMLDQRLLLFGEHLPATLQEVLLGFALSV 78 LV L L W+ A P FILPAP I + + + +L HLPATL +L+G +S+ Sbjct: 13 LVFLLLIIWQIGASTYDKP-FILPAPGGILAELWELKEILITRHLPATLLIILIGLTMSI 71 Query: 79 CCGVLLGTGMHMFSPLEKALYPLLVISQTIPLIALSPIFIMWFGYTLWSKVAVVFLTAFF 138 GV L M+ +E+A YP+L+ SQTIP+IAL+PIF++WFGY++WSKV V L FF Sbjct: 72 ILGVSLAMAMNFSRTVERAFYPILIASQTIPIIALAPIFVLWFGYSIWSKVVVTILITFF 131 Query: 139 PVVIGTYDGLHKRGAVYKELLLTLGANRWQILRKTQIPPALPSLFSGLKLSIVYCVIGAT 198 P+ + T+DGL +EL+LT+GA +W I +P ALP FSGLK+++ VIGA Sbjct: 132 PITVSTFDGLKSVNKDLRELMLTMGAGKWAIFHNVSVPTALPYFFSGLKVAVTLSVIGAA 191 Query: 199 IGEWLGGSRGLGYFSRRMAGNLQSAEMFAAVFLLSALGIVLFLSIKLLENIILQKR 254 IGEWLG GLGYFSRRM A +FA + LLS GI+LFL + LE I L+ R Sbjct: 192 IGEWLGAEAGLGYFSRRMMTQFNGAAVFAPIVLLSIAGILLFLLVTWLETIFLKWR 247 >Q9K9G6.1 Q9K9G6_BACHD ABC transporter (Permease) Length = 250 Score = 217 bits (553), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 113/238 (47%), Positives = 155/238 (65%), Gaps = 1/238 (0%) Query: 17 ALLVLLTLAAWECAARLKLVPAFILPAPTAIWKAMLDQRLLLFGEHLPATLQEVLLGFAL 76 L L+ + WE +AR+ P ++LP+P I +D LF HLPATL + +G AL Sbjct: 11 TLFFLMLMVIWEISARMIGQP-YLLPSPIQIVMRTIDLSESLFFTHLPATLAIISIGLAL 69 Query: 77 SVCCGVLLGTGMHMFSPLEKALYPLLVISQTIPLIALSPIFIMWFGYTLWSKVAVVFLTA 136 S+ G+LL M +E+A+YPLLV SQTIP+IAL+PIF++WFGY++WSKVAV L Sbjct: 70 SIVLGILLSLLMFWNERVERAVYPLLVASQTIPVIALAPIFVLWFGYSIWSKVAVTVLLT 129 Query: 137 FFPVVIGTYDGLHKRGAVYKELLLTLGANRWQILRKTQIPPALPSLFSGLKLSIVYCVIG 196 FFP+ + TYDGL Y+EL T+GA + Q+ + +P LPS +GL++++ VIG Sbjct: 130 FFPITVNTYDGLKSTNRQYEELFYTMGATKRQLFYRLFVPSTLPSFLTGLRIAVPLAVIG 189 Query: 197 ATIGEWLGGSRGLGYFSRRMAGNLQSAEMFAAVFLLSALGIVLFLSIKLLENIILQKR 254 A +GEWLG + GLGYFSRRM +FA +F+LS LGI+ F +IK LENI+L R Sbjct: 190 AAVGEWLGANEGLGYFSRRMMTQFDGPGVFAPIFILSLLGILGFAAIKKLENILLPWR 247 >C2PAK8.1 C2PAK8_BACCE ABC transporter, permease Length = 250 Score = 211 bits (537), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 114/245 (46%), Positives = 155/245 (63%), Gaps = 1/245 (0%) Query: 10 LREYGPFALLVLLTLAAWECAARLKLVPAFILPAPTAIWKAMLDQRLLLFGEHLPATLQE 69 L+E P L + LA WE AR+ + +ILP+P+AI + + +LF HLPATL Sbjct: 4 LKELLPALTLTSILLAFWEVGARI-VDEMYILPSPSAIVMKIWKLKDILFTVHLPATLSV 62 Query: 70 VLLGFALSVCCGVLLGTGMHMFSPLEKALYPLLVISQTIPLIALSPIFIMWFGYTLWSKV 129 VL+G A+S+ GV L M+ + +E+A YPLLV SQTIP+ AL+P+F++WFGYT+WSKV Sbjct: 63 VLIGVAISIVLGVGLAMLMNASNWMERAFYPLLVASQTIPITALAPLFVLWFGYTIWSKV 122 Query: 130 AVVFLTAFFPVVIGTYDGLHKRGAVYKELLLTLGANRWQILRKTQIPPALPSLFSGLKLS 189 V L FFP+ + TYDGL ++ELL+T GA + + K ++P ALP FS LK++ Sbjct: 123 VVTVLITFFPIAVNTYDGLRSTKKEWEELLVTYGATKKDVFLKLKLPSALPYFFSALKIA 182 Query: 190 IVYCVIGATIGEWLGGSRGLGYFSRRMAGNLQSAEMFAAVFLLSALGIVLFLSIKLLENI 249 + VIGA IGEWLG GLGYFS+RM L A +FA + LLS L I + I +LE Sbjct: 183 VPLSVIGAAIGEWLGAQAGLGYFSKRMMTQLDGAGVFAPIVLLSLLAIFFVILISILEKK 242 Query: 250 ILQKR 254 + R Sbjct: 243 FISWR 247 >B7HDE7.1 B7HDE7_BACC4 Putative ABC transporter, permease protein Length = 250 Score = 211 bits (536), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 114/245 (46%), Positives = 154/245 (62%), Gaps = 1/245 (0%) Query: 10 LREYGPFALLVLLTLAAWECAARLKLVPAFILPAPTAIWKAMLDQRLLLFGEHLPATLQE 69 L+E P L + LA WE AR+ + +ILP+P+AI + + +LF HLPATL Sbjct: 4 LKELVPAITLSSILLAVWEIGARI-VDEMYILPSPSAILMKIWKLKDILFTVHLPATLYV 62 Query: 70 VLLGFALSVCCGVLLGTGMHMFSPLEKALYPLLVISQTIPLIALSPIFIMWFGYTLWSKV 129 VL+G +S+ GV L M+ + +E+A YPLLV SQTIP+ AL+P+F++WFGYT+WSKV Sbjct: 63 VLIGVVISIVLGVGLAMLMNASTWMERAFYPLLVASQTIPITALAPLFVLWFGYTIWSKV 122 Query: 130 AVVFLTAFFPVVIGTYDGLHKRGAVYKELLLTLGANRWQILRKTQIPPALPSLFSGLKLS 189 V L FFP+ + TYDGL ++ELL+T GA + I K ++P ALP FS LK++ Sbjct: 123 VVTVLITFFPIAVNTYDGLRSTKKEWEELLVTYGATKRDIFLKLKLPSALPYFFSALKIA 182 Query: 190 IVYCVIGATIGEWLGGSRGLGYFSRRMAGNLQSAEMFAAVFLLSALGIVLFLSIKLLENI 249 + VIGA IGEWLG GLGYFS+RM L A +FA + LLS L I + I +LE Sbjct: 183 VPLSVIGAAIGEWLGAQAGLGYFSKRMMTQLDGAGVFAPIVLLSLLAIFFVVIISILEKK 242 Query: 250 ILQKR 254 + R Sbjct: 243 FISWR 247 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.331 0.145 0.452 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,522,606,301 Number of extensions: 63606772 Number of successful extensions: 240730 Number of sequences better than 1.0e-05: 4068 Number of HSP's gapped: 238214 Number of HSP's successfully gapped: 4099 Length of query: 258 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 125 Effective length of database: 1,807,701,208 Effective search space: 225962651000 Effective search space used: 225962651000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 130 (54.7 bits)