BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0580.0012.p (257 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A8I9Z9.1 A8I9Z9_AZOC5 ABC transporter ATP-binding protein 222 2e-56 B9KYP9.1 B9KYP9_THERP ABC transporter, ATP-binding protein 219 2e-55 B1D4W9.1 B1D4W9_9BACL ABC transporter related 218 6e-55 A6CLP0.1 A6CLP0_9BACI ABC transporter, ATP-binding protein 217 7e-55 Q08W53.1 Q08W53_STIAU ABC transporter ATP-binding protein 215 3e-54 >A8I9Z9.1 A8I9Z9_AZOC5 ABC transporter ATP-binding protein Length = 345 Score = 222 bits (565), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 120/247 (48%), Positives = 156/247 (63%), Gaps = 12/247 (4%) Query: 1 MISMTDLSYSFGTSPETPVFSGLSMDVRQGEFISLVGASGCGKSTLFKIIAGLLQQTGGE 60 ++ M LS SF SG + GEF+++VG SGCGKSTLF I+AGL + G Sbjct: 84 LLEMKGLSKSFAN---VTAVSGFEAAIAPGEFVTVVGPSGCGKSTLFNIVAGLEEPDSGS 140 Query: 61 LNIPGTISADPSSRLGRVAYMPQQDLLLPWRTVLDNCLLPWEL---NRTGSKTEAVRSIR 117 + S LG+V++MPQ+DLLLPWRTV+DN ++P E+ +R ++ EA R Sbjct: 141 ILRFEGRSCHARELLGKVSFMPQRDLLLPWRTVIDNAVIPMEIEGRSRKAARAEA----R 196 Query: 118 NMLERFGLAGTEQRYPHELSGGMRQRTAMLRTLAAGHKLMLLDEPFGALDAITKRGLHRW 177 ML FGLAG +YPH+LSGGMRQR A++RT +LMLLDEPFGALDA+T+ + RW Sbjct: 197 EMLPEFGLAGFGDQYPHQLSGGMRQRVALMRTFMFKRELMLLDEPFGALDALTRTMMQRW 256 Query: 178 LLELXXXXSLEQTVLFITHDLEEALLLSDRIYLMSGGAGGGVQEFPVDLPRPRHYRLNYD 237 LLE+ +T+LFITHD++EAL L DR+ +MS G E PV LPRPR L D Sbjct: 257 LLEVWRKH--RRTILFITHDVDEALFLGDRVLVMSARPGRVKLELPVSLPRPRSAELVTD 314 Query: 238 PHFVALR 244 P FV L+ Sbjct: 315 PEFVRLK 321 >B9KYP9.1 B9KYP9_THERP ABC transporter, ATP-binding protein Length = 268 Score = 219 bits (557), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 125/257 (48%), Positives = 159/257 (61%), Gaps = 16/257 (6%) Query: 1 MISMTDLSYSFGTSPETPVFS----------GLSMDVRQGEFISLVGASGCGKSTLFKII 50 M+S D + T VF L + V GEF+S++G SGCGKSTL +I Sbjct: 1 MVSRVDTDWRLELRGVTKVFQRDQLQVHALGPLDLRVADGEFVSIIGPSGCGKSTLLDMI 60 Query: 51 AGLLQQTGGELNIPGTISADPSSRLGRVAYMPQQDLLLPWRTVLDNCLLPWELNRTGSKT 110 AGL Q T GE+ + G A RLG+VAYM Q+DLLLPWRTVL+N +LP E+ R + Sbjct: 61 AGLEQPTSGEIWLDG---APAPYRLGKVAYMHQRDLLLPWRTVLENAILPLEVKRI-PRR 116 Query: 111 EAVRSIRNMLERFGLAGTEQRYPHELSGGMRQRTAMLRTLAAGHKLMLLDEPFGALDAIT 170 +A+ L RFGLA YP +LSGGMRQR A LRTL LMLLDEPFGALDA+T Sbjct: 117 QAIERAMPWLRRFGLAEFASSYPAQLSGGMRQRAAFLRTLLTQCPLMLLDEPFGALDALT 176 Query: 171 KRGLHRWLLELXXXXSLEQTVLFITHDLEEALLLSDRIYLMSGGAGGGVQEFPVDLPRPR 230 + + WLL L L++TV+ +THD+EEA+LLSDR+ ++S G V + PVDLPR R Sbjct: 177 RSSMQEWLLML--WEELDRTVILVTHDVEEAVLLSDRVVVLSQRPGTIVADIPVDLPRTR 234 Query: 231 HYRLNYDPHFVALRADL 247 Y + D FV+L+A L Sbjct: 235 TYAIVTDQAFVSLKARL 251 >B1D4W9.1 B1D4W9_9BACL ABC transporter related Length = 274 Score = 218 bits (554), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 117/250 (46%), Positives = 162/250 (64%), Gaps = 9/250 (3%) Query: 2 ISMTDLSYSFGTSPETPVFSGLSMDVRQGEFISLVGASGCGKSTLFKIIAGLLQQTGGEL 61 +++ L+Y F E P+F GL ++V +G+F+S+V ASG GK+TLF+++AGLLQ G + Sbjct: 22 LTVKGLTYRF--EGEEPLFDGLDLEVPKGQFVSIVAASGMGKTTLFRLLAGLLQPESGTI 79 Query: 62 NIPGTISADPSSRLGRVAYMPQQDLLLPWRTVLDNCLLPWELNRTGSKTEAVRSIRNMLE 121 G + S+ + YMPQ+D L+PWRTV DN + EL K EA R + ML Sbjct: 80 AAAGAVPGQRST----IGYMPQRDCLMPWRTVQDNAAVGLELAGM-PKREARRRVLEMLP 134 Query: 122 RFGLAGTEQRYPHELSGGMRQRTAMLRTLAAGHKLMLLDEPFGALDAITKRGLHRWLLEL 181 GLAGTE +YPHELSGGMRQR + LR+L AG +LMLLDEPF ALDA+T+ + +WLL++ Sbjct: 135 ELGLAGTESKYPHELSGGMRQRVSFLRSLLAGGELMLLDEPFSALDAMTRISMQQWLLQV 194 Query: 182 XXXXSLEQTVLFITHDLEEALLLSDRIYLMSGGAGGGVQEFPVDLPRPRHYRLNYDPHFV 241 +T+LFITHD++EALLLSD++ + + ++ VDLPRPR Y D F Sbjct: 195 WEKH--RKTILFITHDIDEALLLSDQVLVAASRPITQLEPLAVDLPRPRTYETTLDERFA 252 Query: 242 ALRADLERRL 251 L+ L R+L Sbjct: 253 NLKRLLLRQL 262 >A6CLP0.1 A6CLP0_9BACI ABC transporter, ATP-binding protein Length = 259 Score = 217 bits (553), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 112/234 (47%), Positives = 154/234 (65%), Gaps = 9/234 (3%) Query: 2 ISMTDLSYSFGTSPE---TPVFSGLSMDVRQGEFISLVGASGCGKSTLFKIIAGLLQQTG 58 + + ++S+S+ + V LS+ V+ GEF+S++G SG GKSTLF++I GL Q G Sbjct: 6 LRLEEVSFSYKKERKQEPVQVLDKLSLSVQPGEFVSIIGPSGSGKSTLFRLITGLEQPAG 65 Query: 59 GELNIPGTISADPSSRLGRVAYMPQQDLLLPWRTVLDNCLLPWELNRTGSKTEAVRSIRN 118 G + I G D RLG V YMPQQDLL+PWRTV++N LP +L K E +R+ Sbjct: 66 GSIFIQGKEVKD---RLGLVGYMPQQDLLMPWRTVMENAALPLQLQGL-KKREVEEQVRS 121 Query: 119 MLERFGLAGTEQRYPHELSGGMRQRTAMLRTLAAGHKLMLLDEPFGALDAITKRGLHRWL 178 +LE FGL G E YPH LSGGMRQR + LR L++G++L++LDEPF ALDAIT+ + WL Sbjct: 122 LLEEFGLKGYEDLYPHHLSGGMRQRVSFLRALSSGNELLVLDEPFSALDAITRLSMQEWL 181 Query: 179 LELXXXXSLEQTVLFITHDLEEALLLSDRIYLMSGGAGGGVQEFPVDLPRPRHY 232 L+ ++T+LFITHD+EEAL LSDR+++ S ++E V LPRPR + Sbjct: 182 LK--QWEKQKKTILFITHDVEEALFLSDRVFIFSKIPVSSLKEIAVPLPRPRKF 233 >Q08W53.1 Q08W53_STIAU ABC transporter ATP-binding protein Length = 243 Score = 215 bits (548), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 118/250 (47%), Positives = 156/250 (62%), Gaps = 15/250 (6%) Query: 2 ISMTDLSYSFGTSPETPVFSGLSMDVRQGEFISLVGASGCGKSTLFKIIAGLLQQTGGEL 61 + + + + +G PV S+ V+ GEF+SLVGASG GKST+ K++ GLL+ G Sbjct: 6 LHLDQVHFRYGA---VPVLEAFSLRVQAGEFVSLVGASGSGKSTILKLLTGLLRPEAGTA 62 Query: 62 NIPGTISADPSSRLGRVAYMPQQDLLLPWRTVLDNCLLPWELNRTGSKTEAVRSIRNMLE 121 + G A GR+ YMPQ+D L+PWRT L+N E+ G + EA + R + Sbjct: 63 RVMGAAPAP-----GRIGYMPQRDCLMPWRTALENAAAGLEVQGVGPR-EARQRARELWP 116 Query: 122 RFGLAGTEQRYPHELSGGMRQRTAMLRTLAAGHKLMLLDEPFGALDAITKRGLHRWLLEL 181 FGL+G E RYPH+LSGGMRQR A LRT+ GH ++LLDEPFGALDA+T+ + WLL L Sbjct: 117 AFGLSGAEDRYPHQLSGGMRQRVAFLRTVLGGHSILLLDEPFGALDALTRAQMQAWLLGL 176 Query: 182 XXXXSLEQTVLFITHDLEEALLLSDRIYLMSGGAGGGVQEFPVDLPRPRHYRLNYDPHFV 241 L ++VLF+THD EEA LLSDR+Y++ G GV E PV LPRPR Y + DP V Sbjct: 177 --WQELGKSVLFVTHDAEEAALLSDRVYVLK---GAGV-ELPVGLPRPRSYAMISDPIVV 230 Query: 242 ALRADLERRL 251 RA + R + Sbjct: 231 ERRAAILREV 240 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.139 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,536,223,039 Number of extensions: 62130883 Number of successful extensions: 481145 Number of sequences better than 1.0e-05: 84564 Number of HSP's gapped: 369855 Number of HSP's successfully gapped: 90666 Length of query: 257 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 124 Effective length of database: 1,807,701,208 Effective search space: 224154949792 Effective search space used: 224154949792 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)