BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0580.0008.p (283 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DER3.1 B1DER3_9BACL Extracellular solute-binding protein family 3 326 1e-87 Q97DZ5.1 Q97DZ5_CLOAB Periplasmic amino acid binding protein 325 3e-87 B9JE13.1 B9JE13_AGRRK Amino acid ABC transporter 291 5e-77 A9IRT8.1 A9IRT8_BORPD Putative amino-acid ABC transporter, perip... 287 6e-76 Q92L16.1 Q92L16_RHIME Putative amino acid-binding periplasmic AB... 286 1e-75 >B1DER3.1 B1DER3_9BACL Extracellular solute-binding protein family 3 Length = 313 Score = 326 bits (836), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 160/233 (68%), Positives = 191/233 (81%) Query: 51 NSLEAIKASGKLRIGTEGTYAPFTFHDASGKLTGFDVEIAEEVAKRLGVKPEFFETQWDG 110 NSL+AIK+SG++ IGTEGTYAPFTFHD SGKLTGFDVEIAEE+AKR+GVK +F ET+WDG Sbjct: 81 NSLKAIKSSGEITIGTEGTYAPFTFHDKSGKLTGFDVEIAEEIAKRIGVKAKFVETKWDG 140 Query: 111 IFAGMDAKRFDVIFNEVSITDERKVKYDFSDPYIVSKAVLIVGEKNEDIKTFADLKGKKA 170 + AG+DAKRFD++ NEV+I D+RK KYDFSDPYI+SKAVLIV E N +IK+ +DLKGKK+ Sbjct: 141 MLAGLDAKRFDMVANEVTIRDDRKAKYDFSDPYILSKAVLIVKESNTNIKSLSDLKGKKS 200 Query: 171 GQSLTSNLSDIARENGAEIVVTDGFNQAIDLLTSGRIDATVNDGLSYLDLKKQKPDVKIK 230 GQSLTS+L DIA+ NGA++V DGFNQAIDLLTSGRIDAT+ND LSYLDLKK +PDV IK Sbjct: 201 GQSLTSDLGDIAKANGAQLVAVDGFNQAIDLLTSGRIDATINDKLSYLDLKKARPDVPIK 260 Query: 231 VVDEIAEGSQSAAVFLKGNDXXXXXXXXXXXXMKSDGTYLKISEKYFGADVSK 283 VV E + SQS +F KG+ MK+DG YL+IS+ YFG DVSK Sbjct: 261 VVAETDQVSQSGMLFRKGSKELVDAVSNAIKDMKADGRYLEISKTYFGEDVSK 313 >Q97DZ5.1 Q97DZ5_CLOAB Periplasmic amino acid binding protein Length = 269 Score = 325 bits (833), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 159/236 (67%), Positives = 188/236 (79%), Gaps = 2/236 (0%) Query: 50 QNSLEAIKASGKLRIGTEGTYAPFTFHDASGKLTGFDVEIAEEVAKRLGVKPEFFETQWD 109 QNSLE IK+ GKLRIGTEGTYAPFTFHD+ G LTGFDV+IA+EV+KR+GVKPEF ET+WD Sbjct: 34 QNSLEKIKSEGKLRIGTEGTYAPFTFHDSKGNLTGFDVDIAKEVSKRIGVKPEFVETKWD 93 Query: 110 GIFAGMDAKRFDVIFNEVSITDERKVKYDFSDPYIVSKAVLIVGEKNEDIKTFADLKGKK 169 G+FAG+DA RFDV+ NEV+I +RKVKYDFS PYI S+AVLIV + N IK+F+DLKGKK Sbjct: 94 GMFAGLDAGRFDVVLNEVAIKPDRKVKYDFSTPYITSRAVLIVKKDNNTIKSFSDLKGKK 153 Query: 170 AGQSLTSNLSDIARENGAEIVVTDGFNQAIDLLTSGRIDATVNDGLSYLDLKKQKPDVKI 229 + QSLTSNL +IA+ NGAE++ DGFN+A+DLLTS R+DAT+ND LSYLDLKKQKPD I Sbjct: 154 SAQSLTSNLGNIAKNNGAELIQVDGFNEAVDLLTSNRVDATINDSLSYLDLKKQKPDAPI 213 Query: 230 KVVDEIAEGSQSAAVFLKG--NDXXXXXXXXXXXXMKSDGTYLKISEKYFGADVSK 283 K V S+SAA+F KG N MKSDGTYLKIS+K+FG DVSK Sbjct: 214 KSVANYNNASESAAMFKKGSNNKELIAAVNKALKDMKSDGTYLKISKKWFGTDVSK 269 >B9JE13.1 B9JE13_AGRRK Amino acid ABC transporter Length = 257 Score = 291 bits (745), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 142/233 (60%), Positives = 176/233 (75%) Query: 51 NSLEAIKASGKLRIGTEGTYAPFTFHDASGKLTGFDVEIAEEVAKRLGVKPEFFETQWDG 110 ++L+AI+ +G L++GTEGTYAPFTFHDASGKL GFDVEIAE +A +LGVK EF E +WDG Sbjct: 25 DNLKAIQDAGVLKVGTEGTYAPFTFHDASGKLVGFDVEIAEAIASKLGVKAEFLEGKWDG 84 Query: 111 IFAGMDAKRFDVIFNEVSITDERKVKYDFSDPYIVSKAVLIVGEKNEDIKTFADLKGKKA 170 + AG+DAKR+D + NEV +TD RK KYDFSDPYI SKAVLIV + N DIK FADLKGKK+ Sbjct: 85 LIAGLDAKRYDTVINEVGVTDARKQKYDFSDPYIASKAVLIVKDSNTDIKDFADLKGKKS 144 Query: 171 GQSLTSNLSDIARENGAEIVVTDGFNQAIDLLTSGRIDATVNDGLSYLDLKKQKPDVKIK 230 QSLTSN +A+ +GAE+V TDGF+Q+I L+ +GR DAT+ND LS+LD KK KPD +K Sbjct: 145 AQSLTSNFGKLAQASGAELVGTDGFDQSIQLVLTGRADATINDSLSFLDFKKHKPDAPVK 204 Query: 231 VVDEIAEGSQSAAVFLKGNDXXXXXXXXXXXXMKSDGTYLKISEKYFGADVSK 283 +V + A SAA+ KG +K+DGTY KIS+KYFG DVSK Sbjct: 205 IVAQQANADFSAAIIRKGEPELQAAINKALADIKADGTYAKISDKYFGQDVSK 257 >A9IRT8.1 A9IRT8_BORPD Putative amino-acid ABC transporter, periplasmic amino acid-binding protein Length = 260 Score = 287 bits (735), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 138/235 (58%), Positives = 177/235 (75%), Gaps = 2/235 (0%) Query: 50 QNSLEAIKASGKLRIGTEGTYAPFTFHDASGKLTGFDVEIAEEVAKRLGVKPEFFETQWD 109 Q+ L AIK++G +IGTEGTYAPFT+HDASGKLTGFDVEI E +A+RLGVK EF E +WD Sbjct: 24 QDGLAAIKSAGVFKIGTEGTYAPFTYHDASGKLTGFDVEIGEAIAQRLGVKAEFVEGKWD 83 Query: 110 GIFAGMDAKRFDVIFNEVSITDERKVKYDFSDPYIVSKAVLIVGEKNEDIKTFADLKGKK 169 G+ AG+D KR+D + N+V ITD RK KYDFSDPYI S+AVLIV + N DIK+FADLKGK+ Sbjct: 84 GLIAGLDVKRYDAVINQVGITDARKAKYDFSDPYIASQAVLIVRDDNTDIKSFADLKGKR 143 Query: 170 AGQSLTSNLSDIARENGAEIVVTDGFNQAIDLLTSGRIDATVNDGLSYLDLKKQKPDVKI 229 + +LTSN +A++ GA++V GFN++IDLLTSGR+DAT+ND LS+LD KK KP+ K+ Sbjct: 144 SANTLTSNFGKLAQKYGAQVVAVQGFNESIDLLTSGRVDATINDNLSFLDFKKHKPNAKV 203 Query: 230 KVV--DEIAEGSQSAAVFLKGNDXXXXXXXXXXXXMKSDGTYLKISEKYFGADVS 282 K+V D+ AE S+S + +GN +K+DGTY IS KYFG D+S Sbjct: 204 KIVDSDKSAEFSESGVLIRQGNPQLREAINKALADIKADGTYKNISVKYFGTDLS 258 >Q92L16.1 Q92L16_RHIME Putative amino acid-binding periplasmic ABC transporter Length = 257 Score = 286 bits (732), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 139/233 (59%), Positives = 175/233 (75%) Query: 51 NSLEAIKASGKLRIGTEGTYAPFTFHDASGKLTGFDVEIAEEVAKRLGVKPEFFETQWDG 110 +L+ +K++G L+IGTEGTYAPFT+HDASG L GFDVEI +EVAKRLGVKPEF E +WDG Sbjct: 25 QNLDEVKSAGVLKIGTEGTYAPFTYHDASGALVGFDVEIGQEVAKRLGVKPEFLEGKWDG 84 Query: 111 IFAGMDAKRFDVIFNEVSITDERKVKYDFSDPYIVSKAVLIVGEKNEDIKTFADLKGKKA 170 + AG+DA R+D + N+V IT+ERK KYDFS+PYI SKAVLIV +E+IK FADLKGKK+ Sbjct: 85 LIAGLDANRYDAVINQVGITEERKKKYDFSEPYIASKAVLIVRGDDEEIKDFADLKGKKS 144 Query: 171 GQSLTSNLSDIARENGAEIVVTDGFNQAIDLLTSGRIDATVNDGLSYLDLKKQKPDVKIK 230 QSLTSN +A+ +GAE+V TDGF+Q+I L+ +GR DAT+ND LS+LD KKQKPD +K Sbjct: 145 AQSLTSNFGKLAQASGAELVGTDGFDQSIQLVLTGRADATINDSLSFLDFKKQKPDANVK 204 Query: 231 VVDEIAEGSQSAAVFLKGNDXXXXXXXXXXXXMKSDGTYLKISEKYFGADVSK 283 + E + S + KG +K+DGTY KIS+KYFGADVSK Sbjct: 205 IAAEKPDADYSGIIIRKGEPELLEAINKALAEIKADGTYEKISQKYFGADVSK 257 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.314 0.134 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,267,340,756 Number of extensions: 51167856 Number of successful extensions: 137136 Number of sequences better than 1.0e-05: 5404 Number of HSP's gapped: 131788 Number of HSP's successfully gapped: 5482 Length of query: 283 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 149 Effective length of database: 1,798,280,193 Effective search space: 267943748757 Effective search space used: 267943748757 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 130 (54.7 bits)