BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0580.0007.p (222 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q2B144.1 Q2B144_9BACI Amino acid ABC-type transporter, permease ... 287 4e-76 B1DER4.1 B1DER4_9BACL Polar amino acid ABC transporter, inner me... 285 2e-75 Q97DZ4.1 Q97DZ4_CLOAB Amino acid ABC-type transporter, permease ... 283 5e-75 Q7WAE9.1 Q7WAE9_BORPA Putative amino-acid ABC transporter, perme... 281 3e-74 Q7WJJ2.1 Q7WJJ2_BORBR Putative amino-acid ABC transporter, perme... 279 2e-73 >Q2B144.1 Q2B144_9BACI Amino acid ABC-type transporter, permease component Length = 226 Score = 287 bits (735), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 148/220 (67%), Positives = 170/220 (77%) Query: 3 DRKIQIFLDSLLPLLKAGVAFTIPLAVVSFILGLLLAIFTALIRLSPWTLPRLIARFYVW 62 +R I I DS P+LKAG+ FTIPL +++F LGL+LA F AL RLS +ARFYVW Sbjct: 7 ERIIGILADSFFPILKAGIYFTIPLTLITFALGLILAFFVALARLSSIKPLVALARFYVW 66 Query: 63 IIRGTPLLVQLFIIFFGLPAVGIILDPFIAATIGFTLSVGAYSSEIVRAAILSIHKGQWE 122 I RGTPLLVQ+FI+FFGLP+VGI LDPF AA I FTL+ GAYSSEI+RAAILSI KGQWE Sbjct: 67 IFRGTPLLVQIFILFFGLPSVGITLDPFPAAVIAFTLNKGAYSSEIIRAAILSIPKGQWE 126 Query: 123 AAFSVGMTRGQALRRVILPQAARVSVPPLSNSFISLVKDTSLAATITYVEIFKTAQQITA 182 AA SVGMTR QA+RR+I+PQA RVS+PPL NSFISLVKDTSLAATIT E+F+ QQI A Sbjct: 127 AASSVGMTRSQAMRRIIVPQAVRVSLPPLGNSFISLVKDTSLAATITVTEMFQKGQQIAA 186 Query: 183 TTYEPLLLYCEAALFYLLFCSVLSVLQNYLEKRLDRYSAR 222 TYEPL LY E A YL+F +VLS QN LE R R A+ Sbjct: 187 ATYEPLWLYIEVAFIYLIFSTVLSYFQNKLEDRFGRSVAK 226 >B1DER4.1 B1DER4_9BACL Polar amino acid ABC transporter, inner membrane subunit Length = 223 Score = 285 bits (729), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 156/220 (70%), Positives = 184/220 (83%), Gaps = 1/220 (0%) Query: 1 MDDR-KIQIFLDSLLPLLKAGVAFTIPLAVVSFILGLLLAIFTALIRLSPWTLPRLIARF 59 M++R + IF DS LPLL AG+AFT+PL ++SF LGL+LA+ TAL RLS + IARF Sbjct: 1 MNERTNLDIFTDSFLPLLHAGIAFTVPLTLISFALGLVLALLTALARLSDFYPIVWIARF 60 Query: 60 YVWIIRGTPLLVQLFIIFFGLPAVGIILDPFIAATIGFTLSVGAYSSEIVRAAILSIHKG 119 YVWIIRGTPLLVQLFIIF+GLP+VGI++D F AA IGFTLSVGAY SEI+RAAI+SI KG Sbjct: 61 YVWIIRGTPLLVQLFIIFYGLPSVGILIDAFPAAVIGFTLSVGAYGSEIIRAAIVSIPKG 120 Query: 120 QWEAAFSVGMTRGQALRRVILPQAARVSVPPLSNSFISLVKDTSLAATITYVEIFKTAQQ 179 QWEAAFS+G TR QALRR+ILPQAARV+VPPLSNSFISLVKDTSLAAT+T E+F+ QQ Sbjct: 121 QWEAAFSLGETRLQALRRIILPQAARVTVPPLSNSFISLVKDTSLAATVTVTELFQKGQQ 180 Query: 180 ITATTYEPLLLYCEAALFYLLFCSVLSVLQNYLEKRLDRY 219 ITA YEPLL+YCE AL YL+FCS+L++LQ LE +RY Sbjct: 181 ITAAVYEPLLIYCEVALIYLIFCSILALLQRQLEIFFNRY 220 >Q97DZ4.1 Q97DZ4_CLOAB Amino acid ABC-type transporter, permease component Length = 227 Score = 283 bits (725), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 153/219 (69%), Positives = 182/219 (83%) Query: 4 RKIQIFLDSLLPLLKAGVAFTIPLAVVSFILGLLLAIFTALIRLSPWTLPRLIARFYVWI 63 R I+I DS LPLL AG+ FT+PL ++SFILGLLLA+ TAL R+S L+ARFYV I Sbjct: 9 RIIKILEDSFLPLLTAGLKFTVPLTLISFILGLLLALVTALARISNIKPLELLARFYVSI 68 Query: 64 IRGTPLLVQLFIIFFGLPAVGIILDPFIAATIGFTLSVGAYSSEIVRAAILSIHKGQWEA 123 IRGTPLLVQLFIIFFGLP VG+ + P AA IGFTLSVGAY+SE++RAAILSI KGQWEA Sbjct: 69 IRGTPLLVQLFIIFFGLPTVGVTIKPLTAAIIGFTLSVGAYNSEVIRAAILSIPKGQWEA 128 Query: 124 AFSVGMTRGQALRRVILPQAARVSVPPLSNSFISLVKDTSLAATITYVEIFKTAQQITAT 183 A S+GMT Q+L RV+LPQAARVSVPPL+NSFISLVKDTSLAATIT E+F+ AQ+ITAT Sbjct: 129 ASSIGMTYTQSLVRVVLPQAARVSVPPLANSFISLVKDTSLAATITVAEMFQVAQRITAT 188 Query: 184 TYEPLLLYCEAALFYLLFCSVLSVLQNYLEKRLDRYSAR 222 TYEPL +Y EAA Y +FCS+L+++Q+YLEK+L RY+ R Sbjct: 189 TYEPLWMYIEAAFIYYIFCSLLTLIQHYLEKKLARYTTR 227 >Q7WAE9.1 Q7WAE9_BORPA Putative amino-acid ABC transporter, permease protein Length = 226 Score = 281 bits (719), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 141/216 (65%), Positives = 176/216 (81%), Gaps = 2/216 (0%) Query: 6 IQIFLDSLLPLLKAGVAFTIPLAVVSFILGLLLAIFTALIRL-SPWTLPRLIARFYVWII 64 +Q+ LDS PLL AG+ FT+PL ++SF GL LA AL+RL PW + L+ RFYVW+I Sbjct: 5 LQLMLDSFWPLLHAGLMFTVPLTLLSFAAGLALAFVVALLRLFGPWPIVALM-RFYVWLI 63 Query: 65 RGTPLLVQLFIIFFGLPAVGIILDPFIAATIGFTLSVGAYSSEIVRAAILSIHKGQWEAA 124 RGTPLLVQLF+IF+GLP+VGI+LDP AA IGFTL+VGAY+SE++R AI SI +GQWEAA Sbjct: 64 RGTPLLVQLFVIFYGLPSVGIVLDPLPAALIGFTLNVGAYNSEVIRGAIESIPRGQWEAA 123 Query: 125 FSVGMTRGQALRRVILPQAARVSVPPLSNSFISLVKDTSLAATITYVEIFKTAQQITATT 184 +S+ MTRGQA+RR +LPQAARV+VPPL+NSFI+LVKDTSLAA +T EIF+ AQ+I A T Sbjct: 124 YSLSMTRGQAMRRTVLPQAARVAVPPLANSFIALVKDTSLAAVLTVPEIFQAAQRIAAVT 183 Query: 185 YEPLLLYCEAALFYLLFCSVLSVLQNYLEKRLDRYS 220 YEPL+LY EAAL YL+F S LS LQ +LEKR +++ Sbjct: 184 YEPLILYTEAALIYLVFSSALSSLQVHLEKRFGQHA 219 >Q7WJJ2.1 Q7WJJ2_BORBR Putative amino-acid ABC transporter, permease protein Length = 226 Score = 279 bits (713), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 141/216 (65%), Positives = 175/216 (81%), Gaps = 2/216 (0%) Query: 6 IQIFLDSLLPLLKAGVAFTIPLAVVSFILGLLLAIFTALIRL-SPWTLPRLIARFYVWII 64 +Q+ LDS PLL AG+ FT+PL ++SF GL LA AL+RL PW + L+ RFYVW+I Sbjct: 5 LQLMLDSFWPLLHAGLMFTVPLTLLSFAAGLALAFVVALLRLFGPWPIVALM-RFYVWLI 63 Query: 65 RGTPLLVQLFIIFFGLPAVGIILDPFIAATIGFTLSVGAYSSEIVRAAILSIHKGQWEAA 124 RGTPLLVQLF+IF+GLP+VGI+LDP AA IGFTL+VGAY+SE++R AI SI +GQWEAA Sbjct: 64 RGTPLLVQLFVIFYGLPSVGIVLDPLPAALIGFTLNVGAYNSEVIRGAIESIPRGQWEAA 123 Query: 125 FSVGMTRGQALRRVILPQAARVSVPPLSNSFISLVKDTSLAATITYVEIFKTAQQITATT 184 +S+ MTRGQA+RR +LPQAARV+VPPL+NSFI+LVKDTSLAA +T EIF+ AQ+I A T Sbjct: 124 YSLSMTRGQAMRRTVLPQAARVAVPPLANSFIALVKDTSLAAVLTVPEIFQAAQRIAAVT 183 Query: 185 YEPLLLYCEAALFYLLFCSVLSVLQNYLEKRLDRYS 220 YEPL+LY EAAL YL+F S LS LQ LEKR +++ Sbjct: 184 YEPLILYTEAALIYLVFSSALSSLQVRLEKRFGQHA 219 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.330 0.143 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,151,896,496 Number of extensions: 43420185 Number of successful extensions: 235212 Number of sequences better than 1.0e-05: 7755 Number of HSP's gapped: 228860 Number of HSP's successfully gapped: 7788 Length of query: 222 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 91 Effective length of database: 1,826,543,238 Effective search space: 166215434658 Effective search space used: 166215434658 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 128 (53.9 bits)