BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0580.0006.p (250 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q2B145.1 Q2B145_9BACI Amino acid ABC-type transporter, ATPase co... 343 1e-92 Q97DZ3.1 Q97DZ3_CLOAB Amino acid ABC-type transporter, ATPase co... 340 8e-92 B1DER5.1 B1DER5_9BACL ABC transporter related 328 3e-88 A6CSC6.1 A6CSC6_9BACI Putative uncharacterized protein 325 2e-87 P39456.4 TCYC_BACSU L-cystine import ATP-binding protein tcyC EC... 324 5e-87 >Q2B145.1 Q2B145_9BACI Amino acid ABC-type transporter, ATPase component Length = 248 Score = 343 bits (879), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 163/247 (65%), Positives = 200/247 (80%) Query: 1 MIEIRDLHKSFGPLQVLKGVDLTVEHGKVLVIIGPSGSGKTTLLRCFNLLEQPDRGSLTL 60 MI+I +L+K FG L+VLKG+DL++ GK VIIGPSGSGKTTLLRC NLLE PD G + L Sbjct: 1 MIKIENLYKKFGELEVLKGIDLSIPTGKTAVIIGPSGSGKTTLLRCMNLLETPDAGKIEL 60 Query: 61 GDMKLEFTAGGKIPQRSVLALRQRTGMVFQSYNLFPHMTALGNVMEGQVTVQKRTKEEAR 120 G+ L+F KI ++A R++TGMVFQ+YNLFPH+TA+ NVMEGQ+ V KR+KEEAR Sbjct: 61 GNKTLQFGDSAKIKTAEMVAFRKQTGMVFQNYNLFPHLTAVENVMEGQMVVLKRSKEEAR 120 Query: 121 KRAIELLTKVGLADKADAYPHQLSGGQQQRVAIARAMAVEPEVLLFDEPTSALDPELVGE 180 K+A+ LL KVGL D+AD YPHQLSGGQQQRV IARAMA++P+VLLFDEPTSALDPELVGE Sbjct: 121 KKALGLLEKVGLKDRADNYPHQLSGGQQQRVGIARAMAMDPQVLLFDEPTSALDPELVGE 180 Query: 181 VLKVIKQLAAEGMTMVIVTHEMKFAADVADQIILMDGGVILEQGRPEQVLEHTTHPRALQ 240 VLKV+K LA E +TMVIVTHEM FA D AD++I MDGGV++E+G PE V E + + R Q Sbjct: 181 VLKVMKDLAKEDITMVIVTHEMSFARDAADEVIFMDGGVVVERGTPEDVFEKSQNKRTQQ 240 Query: 241 FLNRLSG 247 FLN+++ Sbjct: 241 FLNKVTA 247 >Q97DZ3.1 Q97DZ3_CLOAB Amino acid ABC-type transporter, ATPase component Length = 247 Score = 340 bits (871), Expect = 8e-92, Method: Compositional matrix adjust. Identities = 158/246 (64%), Positives = 195/246 (79%) Query: 1 MIEIRDLHKSFGPLQVLKGVDLTVEHGKVLVIIGPSGSGKTTLLRCFNLLEQPDRGSLTL 60 MI I +LHKSFG ++LKG+DL V G+ VIIGPSGSGKTTLLRC NLLE P++GS+T+ Sbjct: 1 MITISNLHKSFGNTEILKGIDLNVNKGETTVIIGPSGSGKTTLLRCINLLETPNKGSITV 60 Query: 61 GDMKLEFTAGGKIPQRSVLALRQRTGMVFQSYNLFPHMTALGNVMEGQVTVQKRTKEEAR 120 G+ ++F V+ LR++TGMVFQS+NLFPHMT L N+MEGQVTV KR+K EAR Sbjct: 61 GNSSIDFDNNNSFYTSDVINLRKKTGMVFQSFNLFPHMTVLQNIMEGQVTVLKRSKSEAR 120 Query: 121 KRAIELLTKVGLADKADAYPHQLSGGQQQRVAIARAMAVEPEVLLFDEPTSALDPELVGE 180 K+A+ LL KVGL++K D YPH+LSGGQQQRVAIARAMA++PEVLLFDEPTSALDPEL E Sbjct: 121 KKALLLLEKVGLSEKQDQYPHELSGGQQQRVAIARAMAMDPEVLLFDEPTSALDPELEAE 180 Query: 181 VLKVIKQLAAEGMTMVIVTHEMKFAADVADQIILMDGGVILEQGRPEQVLEHTTHPRALQ 240 VLKV+K+L+ EGMTM++VTH+M FA D A ++I MD G I+E G PE V +T+PR Q Sbjct: 181 VLKVMKELSNEGMTMIVVTHKMSFAKDAAHRVIFMDNGTIIEAGTPEHVFTASTNPRVKQ 240 Query: 241 FLNRLS 246 FLN +S Sbjct: 241 FLNIVS 246 >B1DER5.1 B1DER5_9BACL ABC transporter related Length = 251 Score = 328 bits (841), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 158/248 (63%), Positives = 202/248 (81%) Query: 1 MIEIRDLHKSFGPLQVLKGVDLTVEHGKVLVIIGPSGSGKTTLLRCFNLLEQPDRGSLTL 60 MIE+R+L KSFG VL+G++LT+E G+VLV+IGPSGSGK+TLLRC N+LE P G++ + Sbjct: 1 MIEVRELTKSFGDTSVLRGINLTLEKGQVLVLIGPSGSGKSTLLRCLNVLEIPTSGTVAI 60 Query: 61 GDMKLEFTAGGKIPQRSVLALRQRTGMVFQSYNLFPHMTALGNVMEGQVTVQKRTKEEAR 120 G ++LEF K + VLALR+++GMVFQ+Y+LFPH TAL NVMEGQ+TV++R K EAR Sbjct: 61 GKVRLEFRPNSKPRKAEVLALRRQSGMVFQAYHLFPHFTALQNVMEGQLTVRRRPKNEAR 120 Query: 121 KRAIELLTKVGLADKADAYPHQLSGGQQQRVAIARAMAVEPEVLLFDEPTSALDPELVGE 180 +A++LL KVGL D+A +YPHQLSGGQQQRV IARAM+++PE+LLFDEPTSALDPELV E Sbjct: 121 AKALQLLAKVGLEDRAGSYPHQLSGGQQQRVGIARAMSIDPELLLFDEPTSALDPELVRE 180 Query: 181 VLKVIKQLAAEGMTMVIVTHEMKFAADVADQIILMDGGVILEQGRPEQVLEHTTHPRALQ 240 VLKVI++LA EG TM+IVTHEMKFA +VAD+I+L+D GVI+E+G PEQ+ R Q Sbjct: 181 VLKVIRELAEEGRTMIIVTHEMKFAREVADRIVLLDEGVIVEEGLPEQIFSQPREARTRQ 240 Query: 241 FLNRLSGE 248 FL+ L E Sbjct: 241 FLSLLMDE 248 >A6CSC6.1 A6CSC6_9BACI Putative uncharacterized protein Length = 244 Score = 325 bits (834), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 156/243 (64%), Positives = 193/243 (79%), Gaps = 2/243 (0%) Query: 1 MIEIRDLHKSFGPLQVLKGVDLTVEHGKVLVIIGPSGSGKTTLLRCFNLLEQPDRGSLTL 60 MI I+ L K FG L+VLKG D+ VE G+V+V+IGPSGSGKTT LRC NLLE PD G L + Sbjct: 1 MISIKGLKKRFGDLEVLKGFDVEVEKGQVIVLIGPSGSGKTTFLRCLNLLEVPDEGKLDI 60 Query: 61 GDMKLEFTAGGKIPQRSVLALRQRTGMVFQSYNLFPHMTALGNVMEGQVTVQKRTKEEAR 120 K++F+ K+ ++ +L +R++TGMVFQ+YNLFPH TAL NVMEG V VQ++ K E R Sbjct: 61 SGTKMDFSK--KLTKKELLDMRRKTGMVFQNYNLFPHRTALENVMEGPVIVQRKPKAEVR 118 Query: 121 KRAIELLTKVGLADKADAYPHQLSGGQQQRVAIARAMAVEPEVLLFDEPTSALDPELVGE 180 ++AI LL KVGL +K D YP+QLSGGQQQRV IARA+A+EP+V+LFDEPTSALDPEL+GE Sbjct: 119 QKAISLLEKVGLGEKVDYYPYQLSGGQQQRVGIARALAIEPQVMLFDEPTSALDPELIGE 178 Query: 181 VLKVIKQLAAEGMTMVIVTHEMKFAADVADQIILMDGGVILEQGRPEQVLEHTTHPRALQ 240 VLKV+K LA EGMTMV+VTHEMKFA +VAD++I MDGG I+E G+P V E+ T R Q Sbjct: 179 VLKVMKDLAEEGMTMVVVTHEMKFAKEVADEVIFMDGGYIVEGGKPADVFENPTQERTRQ 238 Query: 241 FLN 243 FLN Sbjct: 239 FLN 241 >P39456.4 TCYC_BACSU L-cystine import ATP-binding protein tcyC EC=3.6.3.- Length = 247 Score = 324 bits (830), Expect = 5e-87, Method: Compositional matrix adjust. Identities = 155/245 (63%), Positives = 193/245 (78%), Gaps = 2/245 (0%) Query: 1 MIEIRDLHKSFGPLQVLKGVDLTVEHGKVLVIIGPSGSGKTTLLRCFNLLEQPDRGSLTL 60 M+ ++ L+KSFG ++LK +D+ +E GKV+ I+GPSGSGKTTLLRC N LE P+RG L Sbjct: 1 MLTVKGLNKSFGENEILKKIDMKIEKGKVIAILGPSGSGKTTLLRCLNALEIPNRGELAF 60 Query: 61 GDMKLEFTAGGKIPQRSVLALRQRTGMVFQSYNLFPHMTALGNVMEGQVTVQKRTKEEAR 120 D ++F+ K+ Q +L LR+++GMVFQ+Y+LFPH TAL NVMEG V VQKR KEE R Sbjct: 61 DDFSIDFSK--KVKQADILKLRRKSGMVFQAYHLFPHRTALENVMEGPVQVQKRNKEEVR 118 Query: 121 KRAIELLTKVGLADKADAYPHQLSGGQQQRVAIARAMAVEPEVLLFDEPTSALDPELVGE 180 K AI+LL KVGL DK D YP QLSGGQQQRV IARA+A++PE++LFDEPTSALDPELVGE Sbjct: 119 KEAIQLLDKVGLKDKMDLYPFQLSGGQQQRVGIARALAIQPELMLFDEPTSALDPELVGE 178 Query: 181 VLKVIKQLAAEGMTMVIVTHEMKFAADVADQIILMDGGVILEQGRPEQVLEHTTHPRALQ 240 VLKVIK LA EG TMV+VTHE+KFA +VAD++I +DGGVI+EQG PEQ+ R + Sbjct: 179 VLKVIKDLANEGWTMVVVTHEIKFAQEVADEVIFIDGGVIVEQGPPEQIFSAPKEERTQR 238 Query: 241 FLNRL 245 FLNR+ Sbjct: 239 FLNRI 243 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.136 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,384,618,284 Number of extensions: 53093207 Number of successful extensions: 591127 Number of sequences better than 1.0e-05: 98378 Number of HSP's gapped: 418850 Number of HSP's successfully gapped: 107853 Length of query: 250 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 118 Effective length of database: 1,817,122,223 Effective search space: 214420422314 Effective search space used: 214420422314 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)