BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0580.0005.p (226 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0ZDC0.1 C0ZDC0_BREBN Putative uncharacterized protein 194 7e-48 B1DF81.1 B1DF81_9BACL S-layer domain protein 187 5e-46 B1DDB7.1 B1DDB7_9BACL S-layer domain protein 174 7e-42 B1DKJ4.1 B1DKJ4_9BACL S-layer domain protein 119 2e-25 B3KIM9.1 B3KIM9_9BACI S-layer domain protein 113 1e-23 >C0ZDC0.1 C0ZDC0_BREBN Putative uncharacterized protein Length = 220 Score = 194 bits (492), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 99/218 (45%), Positives = 142/218 (65%), Gaps = 3/218 (1%) Query: 1 MNFKKSAFAAVTSVSLLTFSLAGPIFAADSSFKDINNVTGKDKINSLKEQGLIKGISDTQ 60 MN +K+ + ++ ++L T S + P FAA + F DI KDKI SL++QG+IKG+ D++ Sbjct: 1 MNIRKNMIS-LSLLALFTVSFSQPSFAATTPFTDIGQSGAKDKILSLQQQGVIKGVDDSK 59 Query: 61 FLPGSKVTTAQGVQFIAGGLQLSLAAIDFNKAPLASSTFTKVKDNAWYAEAFVNAHYNGI 120 F P +T AQG+Q + LSLAA+ F KAP A+ F+K ++AWYAE+ + A NG+ Sbjct: 60 FAPNETITAAQGIQLMVNAFDLSLAAVTFVKAPQATDYFSKADNDAWYAESLIIAAVNGL 119 Query: 121 EIAADIDPSXXXXMTKELFTNLLVQGIEKVGNLPMINIVPADIADADALEPSFQGSIQRS 180 E+ D+DP+ T+E F + L++ +E GNLPMI +VP +I D L +QGSIQR+ Sbjct: 120 ELPNDLDPN--AEWTREQFIHQLMKVMETKGNLPMIKLVPVEIKDDHDLTVDYQGSIQRA 177 Query: 181 LKYNINTLDANGKFNPKKEITRAEAAVMLYNALDYLKS 218 L +I LD K +P+K +TR EAA M+YNAL YLKS Sbjct: 178 LARDIIELDKENKLHPQKPVTREEAAEMIYNALAYLKS 215 >B1DF81.1 B1DF81_9BACL S-layer domain protein Length = 222 Score = 187 bits (476), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 96/213 (45%), Positives = 135/213 (63%), Gaps = 2/213 (0%) Query: 4 KKSAFAAVTSVSLLTFSLAGPIFAADSSFKDINNVTGKDKINSLKEQGLIKGISDTQFLP 63 KKS F + + ++LT S+AG FAA + F DI NV KDKI +L+ +GL++G+ + ++ P Sbjct: 3 KKSKFVTLAATAVLTLSIAGQSFAATNPFSDIANVPAKDKITALQNKGLVQGVGEDRYFP 62 Query: 64 GSKVTTAQGVQFIAGGLQLSLAAIDFNKAPLASSTFTKVKDNAWYAEAFVNAHYNGIEIA 123 + +T AQG+Q I L L++ + F K P A+ F K DNAWYA+A + A N I + Sbjct: 63 DATLTAAQGIQLIVNALDLNIDTLRFFKEPHATDYFPKADDNAWYADALIIAANNNIGLP 122 Query: 124 ADIDPSXXXXMTKELFTNLLVQGIEKVGNLPMINIVPADIADADALEPSFQGSIQRSLKY 183 D+DP+ TKE FT+ L+ IE+ NLPMI I P D D + S+ GSIQR+L Sbjct: 123 NDLDPN--KTWTKEEFTHQLILAIEQHSNLPMIKIAPVAFNDQDEVSVSYDGSIQRALVL 180 Query: 184 NINTLDANGKFNPKKEITRAEAAVMLYNALDYL 216 I LD +G FNP +ITRA+AAV++YNAL Y+ Sbjct: 181 KIAELDQDGNFNPTDDITRADAAVLIYNALAYI 213 >B1DDB7.1 B1DDB7_9BACL S-layer domain protein Length = 237 Score = 174 bits (440), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 89/201 (44%), Positives = 132/201 (65%), Gaps = 4/201 (1%) Query: 3 FKKSAFAAVTSVSLLTFSLAGPIFAAD-SSFKDINNVTGKDKINSLKEQGLIKGISDTQF 61 KK AA S ++L +++G AAD SSF DI + + +I +L+E G++KG+S ++F Sbjct: 1 MKKRITAAAISAAVLFGAVSGQALAADNSSFTDIAGTSSRAQIEALQELGIVKGVSSSEF 60 Query: 62 LPGSKVTTAQGVQFIAGGLQLSLAAIDFNKAPLASSTFTKVKDNAWYAEAFVNAHYNGIE 121 P +T AQG++ I +QLSLAAIDFN+ P A FT VK++AWYAE+FV AHYNG++ Sbjct: 61 HPEENLTGAQGIELIVRTMQLSLAAIDFNQTPTADGFFTNVKNDAWYAESFVIAHYNGLD 120 Query: 122 IAADIDPSXXXXMTKELFTNLLVQGIEKVGNLPMINIVPADIADADALEPSFQGSIQRSL 181 + ADIDP+ +T+E F + LVQ +EK G P+I + +I D + +QG+IQR+L Sbjct: 121 LPADIDPN--KPLTREQFAHYLVQALEKTGQYPLIKMY-INIQDEKDITVDYQGTIQRAL 177 Query: 182 KYNINTLDANGKFNPKKEITR 202 Y I LD +G F+P++ + R Sbjct: 178 LYKIVALDEDGNFHPQQIVNR 198 >B1DKJ4.1 B1DKJ4_9BACL S-layer domain protein Length = 317 Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 75/209 (35%), Positives = 112/209 (53%), Gaps = 8/209 (3%) Query: 16 LLTFSLAGPIFAADSSFKDINNVTGKDKINSLKEQGLIKGISDTQFLPGSKVTTAQGVQF 75 LL F+L +FA + KD N K KI SL++QG+IKG +F K+T A G+ Sbjct: 15 LLVFTLGQTVFAFSDTSKDPN----KSKIESLEKQGVIKGEKGNKFNSNGKLTYAAGISM 70 Query: 76 IAGGLQLSLAAIDFNKAPLASSTFTKVKDNAWYAEAFVNAHYNGIEIAADIDPSXXXXMT 135 I L++ I F K P + + +K+ +WYA+AF+ A YNG+E+ ++ MT Sbjct: 71 IVKAFDLNIDNIRFIKKPEVADYYPNLKNGSWYADAFIIAQYNGLEVPKNV--KANDEMT 128 Query: 136 KELFTNLLVQGIEKVGNLPMINIVPADIADADALEPSFQGSIQRSLKYNINTLDANGKFN 195 +E F + L + I K G+ I + + D + + SIQ+ L I TLD F Sbjct: 129 REQFAHHLFKAITKKGDFAFIELY-MTVNDEKDVNKDYMNSIQKLLISKIATLDKKNNFY 187 Query: 196 PKKEITRAEAAVMLYNALDYLKSKTNTAP 224 PK++ITR AA LY+ L+++K KT T P Sbjct: 188 PKQKITRGVAAGWLYDGLEFVK-KTPTIP 215 >B3KIM9.1 B3KIM9_9BACI S-layer domain protein Length = 308 Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 74/213 (34%), Positives = 118/213 (55%), Gaps = 16/213 (7%) Query: 16 LLTFSLAGPIFAADSSFKDINNVTGKDKINSLKEQGLIKGISDTQFLPGSKVTTAQGVQF 75 L+T SL G A S+F DI + L+ +G+I+GIS +F P +TTAQ VQ Sbjct: 12 LVTSSLLGA--GAASAFTDIQEEKPLQMVKELQSKGIIQGISADKFAPSKTITTAQAVQM 69 Query: 76 I--AGGLQLSLAAIDFNKAPLASSTFTKVKDNAWYAEAFVNAHYNGIEIAADIDPSXXXX 133 I A GL++ + +F V +AW+AEA A NG+ ++AD+ Sbjct: 70 IVNAAGLEV--------QPNFTGRSFDSVPKDAWFAEAVNIAAQNGLSVSADM--KWNEP 119 Query: 134 MTKELFTNLLVQGIEKVGNLPMINIVPADIADADALEPSFQGSIQRSLKYNINTLDANGK 193 +T+E F LL + I+K GN P+I ++ +AD D ++ +G++Q L I LDAN K Sbjct: 120 ITREGFATLLSEAIQKTGNYPVI-MMYLHVADEDLMKEESRGAVQFLLLTKIAKLDANDK 178 Query: 194 FNPKKEITRAEAAVMLYNALDYLKS-KTNTAPQ 225 F+P K ++R EAA ++YN++ +++ + N P+ Sbjct: 179 FHPTKSLSRIEAAELVYNSIRFIEEHQKNMIPE 211 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.314 0.130 0.356 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,162,582,338 Number of extensions: 43197180 Number of successful extensions: 81523 Number of sequences better than 1.0e-05: 56 Number of HSP's gapped: 81528 Number of HSP's successfully gapped: 56 Length of query: 226 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 95 Effective length of database: 1,826,543,238 Effective search space: 173521607610 Effective search space used: 173521607610 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 129 (54.3 bits)