BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0580.0003.p (159 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DJD0.1 B1DJD0_9BACL Ferric uptake regulator, Fur family 186 5e-46 B3KK77.1 B3KK77_9BACI Ferric-uptake regulator 178 1e-43 B1DJK4.1 B1DJK4_9BACL Ferric uptake regulator, Fur family 176 6e-43 C0ZC47.1 C0ZC47_BREBN Ferric uptake regulation protein 168 1e-40 Q8EQ65.1 Q8EQ65_OCEIH Ferric uptake regulation protein (Fur family) 166 6e-40 >B1DJD0.1 B1DJD0_9BACL Ferric uptake regulator, Fur family Length = 152 Score = 186 bits (472), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 90/149 (60%), Positives = 105/149 (70%), Gaps = 3/149 (2%) Query: 6 IANISQQFAAHHYKLTPQREAIVRVLLDNEKDHLSVEEVYMLVKNSYPHLGLATVYRTLE 65 I I QQ + YKLTPQREA VRVLL+NE+DHLS E+V+MLVK+ P +GLATVYRTLE Sbjct: 5 IEKIKQQLQSQGYKLTPQREATVRVLLENEEDHLSAEDVFMLVKDKAPEIGLATVYRTLE 64 Query: 66 LLCELHIVEKMNFGDGVARYDLRGDDHAHMHHHLICNVCGRLEEIKDDWXXXXXXXXXXX 125 LL E+H+VEK+NFGDGVARYDLR D H HHHLIC CG ++EIK+DW Sbjct: 65 LLSEMHVVEKLNFGDGVARYDLRTDSSKHHHHHLICVQCGAMDEIKEDWLLPLEERLEQE 124 Query: 126 YGFNVTDHRLDFKGTYNSCKRSGCKGEKS 154 YGF V DHRLDF+G C R +KS Sbjct: 125 YGFTVIDHRLDFQGV---CHRCNANNDKS 150 >B3KK77.1 B3KK77_9BACI Ferric-uptake regulator Length = 154 Score = 178 bits (452), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 86/143 (60%), Positives = 98/143 (68%) Query: 6 IANISQQFAAHHYKLTPQREAIVRVLLDNEKDHLSVEEVYMLVKNSYPHLGLATVYRTLE 65 I I QQ + YKLTPQREA V VLL+NE DHLS E+V+MLVK P +GLATVYRTLE Sbjct: 5 IDKIKQQLQSQGYKLTPQREATVSVLLENEDDHLSAEDVFMLVKEKAPEIGLATVYRTLE 64 Query: 66 LLCELHIVEKMNFGDGVARYDLRGDDHAHMHHHLICNVCGRLEEIKDDWXXXXXXXXXXX 125 LL ELH+VEK+NFGDGVARYDLR D H HHHLIC CG ++EI++DW Sbjct: 65 LLSELHVVEKINFGDGVARYDLRTDTSKHHHHHLICTQCGSMDEIREDWLGPLEERLERE 124 Query: 126 YGFNVTDHRLDFKGTYNSCKRSG 148 + F V DHRLDF G CK G Sbjct: 125 FNFTVHDHRLDFHGICYRCKEKG 147 >B1DJK4.1 B1DJK4_9BACL Ferric uptake regulator, Fur family Length = 150 Score = 176 bits (446), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 84/134 (62%), Positives = 96/134 (71%) Query: 6 IANISQQFAAHHYKLTPQREAIVRVLLDNEKDHLSVEEVYMLVKNSYPHLGLATVYRTLE 65 + I++Q YKLTPQR A VRVLL+NEKDHLS E+VYML+K S P +GLATVYR+LE Sbjct: 6 METINRQLRTKGYKLTPQRAATVRVLLENEKDHLSAEDVYMLLKRSNPDIGLATVYRSLE 65 Query: 66 LLCELHIVEKMNFGDGVARYDLRGDDHAHMHHHLICNVCGRLEEIKDDWXXXXXXXXXXX 125 LL ELHIVEK+NFGDG RYDLR +D H HHHLIC CG +EEI DDW Sbjct: 66 LLSELHIVEKVNFGDGATRYDLRSNDQEHHHHHLICTECGTVEEIMDDWLLPMENRIAKE 125 Query: 126 YGFNVTDHRLDFKG 139 +GF V DHRLDF G Sbjct: 126 FGFKVLDHRLDFHG 139 >C0ZC47.1 C0ZC47_BREBN Ferric uptake regulation protein Length = 154 Score = 168 bits (426), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 83/139 (59%), Positives = 99/139 (71%) Query: 6 IANISQQFAAHHYKLTPQREAIVRVLLDNEKDHLSVEEVYMLVKNSYPHLGLATVYRTLE 65 + I QQ + +YKLTPQREA VRVLL+NE+DHLS E+VY+LVK+ P +GLATVYRTLE Sbjct: 6 LEKIKQQLHSQNYKLTPQREATVRVLLENEEDHLSAEDVYLLVKDKAPEIGLATVYRTLE 65 Query: 66 LLCELHIVEKMNFGDGVARYDLRGDDHAHMHHHLICNVCGRLEEIKDDWXXXXXXXXXXX 125 LL EL I+ KMNFGDGVARYDLR D+ A+ HHHLIC CG ++EI +D Sbjct: 66 LLSELKILHKMNFGDGVARYDLRDDNAAYHHHHLICLNCGTVDEIFEDLLVTAEEKVKNV 125 Query: 126 YGFNVTDHRLDFKGTYNSC 144 Y F +TDHRL F G N C Sbjct: 126 YNFYITDHRLTFYGICNRC 144 >Q8EQ65.1 Q8EQ65_OCEIH Ferric uptake regulation protein (Fur family) Length = 151 Score = 166 bits (420), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 81/146 (55%), Positives = 98/146 (67%) Query: 6 IANISQQFAAHHYKLTPQREAIVRVLLDNEKDHLSVEEVYMLVKNSYPHLGLATVYRTLE 65 I I +Q +H YKLTPQREA VRVLL+ E+DHLS E+VY+LVK P +GLATVYRTLE Sbjct: 5 IDQIKKQLHSHSYKLTPQREATVRVLLEREEDHLSAEDVYLLVKEKSPEIGLATVYRTLE 64 Query: 66 LLCELHIVEKMNFGDGVARYDLRGDDHAHMHHHLICNVCGRLEEIKDDWXXXXXXXXXXX 125 LL EL IV+K+NFGDGV+RYDLR + H HHHL+C CG +EEI++D Sbjct: 65 LLSELKIVDKINFGDGVSRYDLRKEGAKHFHHHLVCIECGSVEEIENDLLEDVERIVQTD 124 Query: 126 YGFNVTDHRLDFKGTYNSCKRSGCKG 151 +GF V DHRL F G C+ K Sbjct: 125 WGFEVKDHRLTFHGICKQCQEVIVKA 150 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.323 0.138 0.432 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 840,711,413 Number of extensions: 29784064 Number of successful extensions: 67995 Number of sequences better than 1.0e-05: 2052 Number of HSP's gapped: 66480 Number of HSP's successfully gapped: 2052 Length of query: 159 Length of database: 3,060,696,203 Length adjustment: 120 Effective length of query: 39 Effective length of database: 1,930,174,403 Effective search space: 75276801717 Effective search space used: 75276801717 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 125 (52.8 bits)