BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0579.0070.p (245 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KLT4.1 B3KLT4_9BACI Extracellular solute-binding protein family 3 319 2e-85 C2UNU2.1 C2UNU2_BACCE Amino acid ABC transporter, amino acid-bin... 305 2e-81 C2QL34.1 C2QL34_BACCE Amino acid ABC transporter, amino acid-bin... 305 2e-81 Q74NN6.1 Q74NN6_BACC1 Amino acid ABC transporter, amino acid-bin... 305 2e-81 B7JU07.1 B7JU07_BACC0 Amino acid ABC transporter, amino acid-bin... 305 2e-81 >B3KLT4.1 B3KLT4_9BACI Extracellular solute-binding protein family 3 Length = 267 Score = 319 bits (817), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 150/218 (68%), Positives = 181/218 (83%) Query: 20 GCSGSKGDDGKLVIGIDDKFAPMGFRDDNNEIVGFDIDYAKAAAAKMGKEVTFQPIDWSA 79 GCS S +LV+GIDDKFAPMGFRD++NEIVGFDIDYA+AAA KMGKEV FQPIDW + Sbjct: 31 GCSSSASGGNELVVGIDDKFAPMGFRDESNEIVGFDIDYARAAAEKMGKEVKFQPIDWKS 90 Query: 80 KESELNSGRIDMIWNGYTITDERKEKVLFTKPYLENSQVVVVLADSALVKLDDLAGKEVG 139 KESEL+SGRID+IWNGYTITDERKEKVLFTKPYLENSQVV VLADS + + DLAGK+VG Sbjct: 91 KESELSSGRIDLIWNGYTITDERKEKVLFTKPYLENSQVVAVLADSDIASISDLAGKQVG 150 Query: 140 LQXXXXXXXXXXXXPLKAKIANVSEFPDNVLALTDLKSKRLDGVVIDEVVARYYMSKEKG 199 LQ + ++ ++EFPDN+LAL+DLK+ R++ V+IDEVV +Y+MSKE+G Sbjct: 151 LQSLSSAADALSANEIHTQVKKINEFPDNMLALSDLKNGRVEAVIIDEVVMKYFMSKEEG 210 Query: 200 TYKLLDESLAPEQYGIGIKKGNEALLAELQKALDELSS 237 TYK+L+ESLAPEQYGIG+KKGNE LL LQKALDE+++ Sbjct: 211 TYKILEESLAPEQYGIGVKKGNEELLESLQKALDEMNA 248 >C2UNU2.1 C2UNU2_BACCE Amino acid ABC transporter, amino acid-binding protein Length = 262 Score = 305 bits (782), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 150/218 (68%), Positives = 177/218 (81%), Gaps = 1/218 (0%) Query: 20 GCSGSK-GDDGKLVIGIDDKFAPMGFRDDNNEIVGFDIDYAKAAAAKMGKEVTFQPIDWS 78 GCS K +D LVIGIDDKFAPMGFRD++N+IVGFDIDYAKAAA KMG +V FQPIDW Sbjct: 25 GCSKPKEKEDNTLVIGIDDKFAPMGFRDESNKIVGFDIDYAKAAAEKMGTKVKFQPIDWK 84 Query: 79 AKESELNSGRIDMIWNGYTITDERKEKVLFTKPYLENSQVVVVLADSALVKLDDLAGKEV 138 KESEL+SGRID+IWNGYTITD+RK KVLFTKPYL+N+QVVV LADS + KL++L GK V Sbjct: 85 TKESELSSGRIDLIWNGYTITDDRKNKVLFTKPYLKNAQVVVTLADSPITKLNNLEGKVV 144 Query: 139 GLQXXXXXXXXXXXXPLKAKIANVSEFPDNVLALTDLKSKRLDGVVIDEVVARYYMSKEK 198 GLQ P+K+KI V+EF DNV AL DLKS RLD V+IDEVV YYM+KEK Sbjct: 145 GLQSLSSASDALNSNPIKSKIKTVTEFADNVSALNDLKSGRLDAVIIDEVVINYYMTKEK 204 Query: 199 GTYKLLDESLAPEQYGIGIKKGNEALLAELQKALDELS 236 T+K+LDE L+PE+YGIG+KKGN+ALL +LQKALDE++ Sbjct: 205 DTFKILDEFLSPEEYGIGVKKGNDALLKKLQKALDEMN 242 >C2QL34.1 C2QL34_BACCE Amino acid ABC transporter, amino acid-binding protein Length = 262 Score = 305 bits (782), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 150/218 (68%), Positives = 177/218 (81%), Gaps = 1/218 (0%) Query: 20 GCSGSK-GDDGKLVIGIDDKFAPMGFRDDNNEIVGFDIDYAKAAAAKMGKEVTFQPIDWS 78 GCS K +D LVIGIDDKFAPMGFRD++N+IVGFDIDYAKAAA KMG +V FQPIDW Sbjct: 25 GCSKPKEKEDNTLVIGIDDKFAPMGFRDESNKIVGFDIDYAKAAAEKMGTKVKFQPIDWK 84 Query: 79 AKESELNSGRIDMIWNGYTITDERKEKVLFTKPYLENSQVVVVLADSALVKLDDLAGKEV 138 KESEL+SGRID+IWNGYTITD+RK KVLFTKPYL+N+QVVV LADS + KL++L GK V Sbjct: 85 TKESELSSGRIDLIWNGYTITDDRKNKVLFTKPYLKNAQVVVTLADSPITKLNNLEGKVV 144 Query: 139 GLQXXXXXXXXXXXXPLKAKIANVSEFPDNVLALTDLKSKRLDGVVIDEVVARYYMSKEK 198 GLQ P+K+KI V+EF DNV AL DLKS RLD V+IDEVV YYM+KEK Sbjct: 145 GLQSLSSASDALNSNPIKSKIKTVTEFADNVSALNDLKSGRLDAVIIDEVVINYYMTKEK 204 Query: 199 GTYKLLDESLAPEQYGIGIKKGNEALLAELQKALDELS 236 T+K+LDE L+PE+YGIG+KKGN+ALL +LQKALDE++ Sbjct: 205 DTFKILDEFLSPEEYGIGVKKGNDALLKKLQKALDEMN 242 >Q74NN6.1 Q74NN6_BACC1 Amino acid ABC transporter, amino acid-binding protein Length = 257 Score = 305 bits (782), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 150/218 (68%), Positives = 177/218 (81%), Gaps = 1/218 (0%) Query: 20 GCSGSK-GDDGKLVIGIDDKFAPMGFRDDNNEIVGFDIDYAKAAAAKMGKEVTFQPIDWS 78 GCS K +D LVIGIDDKFAPMGFRD++N+IVGFDIDYAKAAA KMG +V FQPIDW Sbjct: 20 GCSKPKEKEDNTLVIGIDDKFAPMGFRDESNKIVGFDIDYAKAAAEKMGTKVKFQPIDWK 79 Query: 79 AKESELNSGRIDMIWNGYTITDERKEKVLFTKPYLENSQVVVVLADSALVKLDDLAGKEV 138 KESEL+SGRID+IWNGYTITD+RK KVLFTKPYL+N+QVVV LADS + KL++L GK V Sbjct: 80 TKESELSSGRIDLIWNGYTITDDRKNKVLFTKPYLKNAQVVVTLADSPITKLNNLEGKVV 139 Query: 139 GLQXXXXXXXXXXXXPLKAKIANVSEFPDNVLALTDLKSKRLDGVVIDEVVARYYMSKEK 198 GLQ P+K+KI V+EF DNV AL DLKS RLD V+IDEVV YYM+KEK Sbjct: 140 GLQSLSSASDALNSNPIKSKIKTVTEFADNVSALNDLKSGRLDAVIIDEVVINYYMTKEK 199 Query: 199 GTYKLLDESLAPEQYGIGIKKGNEALLAELQKALDELS 236 T+K+LDE L+PE+YGIG+KKGN+ALL +LQKALDE++ Sbjct: 200 DTFKILDEFLSPEEYGIGVKKGNDALLKKLQKALDEMN 237 >B7JU07.1 B7JU07_BACC0 Amino acid ABC transporter, amino acid-binding protein Length = 257 Score = 305 bits (782), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 150/218 (68%), Positives = 177/218 (81%), Gaps = 1/218 (0%) Query: 20 GCSGSK-GDDGKLVIGIDDKFAPMGFRDDNNEIVGFDIDYAKAAAAKMGKEVTFQPIDWS 78 GCS K +D LVIGIDDKFAPMGFRD++N+IVGFDIDYAKAAA KMG +V FQPIDW Sbjct: 20 GCSKPKEKEDNTLVIGIDDKFAPMGFRDESNKIVGFDIDYAKAAAEKMGTKVKFQPIDWK 79 Query: 79 AKESELNSGRIDMIWNGYTITDERKEKVLFTKPYLENSQVVVVLADSALVKLDDLAGKEV 138 KESEL+SGRID+IWNGYTITD+RK KVLFTKPYL+N+QVVV LADS + KL++L GK V Sbjct: 80 TKESELSSGRIDLIWNGYTITDDRKNKVLFTKPYLKNAQVVVTLADSPITKLNNLEGKVV 139 Query: 139 GLQXXXXXXXXXXXXPLKAKIANVSEFPDNVLALTDLKSKRLDGVVIDEVVARYYMSKEK 198 GLQ P+K+KI V+EF DNV AL DLKS RLD V+IDEVV YYM+KEK Sbjct: 140 GLQSLSSASDALNSNPIKSKIKTVTEFADNVSALNDLKSGRLDAVIIDEVVINYYMTKEK 199 Query: 199 GTYKLLDESLAPEQYGIGIKKGNEALLAELQKALDELS 236 T+K+LDE L+PE+YGIG+KKGN+ALL +LQKALDE++ Sbjct: 200 DTFKILDEFLSPEEYGIGVKKGNDALLKKLQKALDEMN 237 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.314 0.135 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,219,698,569 Number of extensions: 47196012 Number of successful extensions: 96398 Number of sequences better than 1.0e-05: 4760 Number of HSP's gapped: 93027 Number of HSP's successfully gapped: 4840 Length of query: 245 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 113 Effective length of database: 1,817,122,223 Effective search space: 205334811199 Effective search space used: 205334811199 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 129 (54.3 bits)