BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0579.0069.p (157 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0Z6B0.1 C0Z6B0_BREBN Amino acid ABC transporter permease protein 192 9e-48 B3KLT3.1 B3KLT3_9BACI Polar amino acid ABC transporter, inner me... 184 2e-45 C2TR22.1 C2TR22_BACCE Amino acid ABC transporter, permease protein 184 3e-45 Q74NN5.1 Q74NN5_BACC1 Amino acid ABC transporter, permease protein 183 4e-45 B7JU06.1 B7JU06_BACC0 Amino acid ABC transporter, permease protein 183 4e-45 >C0Z6B0.1 C0Z6B0_BREBN Amino acid ABC transporter permease protein Length = 219 Score = 192 bits (487), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 91/147 (61%), Positives = 106/147 (72%) Query: 1 MNIDYIIKIAGPMLEGARTTXXXXXXXXXXXXXXGMLVTLMAKSSIKPLAWIAHTYIYVM 60 MN+DYI+ I PMLEGA+ T G L+TL+AKSS K LAW+AHTY+YVM Sbjct: 1 MNVDYILSITKPMLEGAQMTVLLFLIAILLSIPLGFLITLLAKSSNKALAWLAHTYVYVM 60 Query: 61 RGTPXXXXXXXXXXXXPQIPVIGQYLVLDRFVAASLGFILNYGAYFAEIFRGGLLSIDKG 120 RGTP P +PV+G YLV+DRFVAA +GF+LNY AYFAEIFRGGLLSIDKG Sbjct: 61 RGTPLLLQLLFICFGLPLLPVVGDYLVMDRFVAACVGFVLNYAAYFAEIFRGGLLSIDKG 120 Query: 121 QHEAAQVLGLSKWQTLRKVILAQMFRV 147 Q+EAAQVLG SKWQT K+I+ QMFRV Sbjct: 121 QYEAAQVLGFSKWQTTNKIIMPQMFRV 147 >B3KLT3.1 B3KLT3_9BACI Polar amino acid ABC transporter, inner membrane subunit Length = 219 Score = 184 bits (467), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 88/147 (59%), Positives = 107/147 (72%) Query: 1 MNIDYIIKIAGPMLEGARTTXXXXXXXXXXXXXXGMLVTLMAKSSIKPLAWIAHTYIYVM 60 M++DYI++I PMLEGA+TT G + TLM +S+IKPLAW+A+ YIYV Sbjct: 1 MSMDYIVQIGKPMLEGAQTTILLFLISILASIPLGFVFTLMVRSAIKPLAWLANAYIYVF 60 Query: 61 RGTPXXXXXXXXXXXXPQIPVIGQYLVLDRFVAASLGFILNYGAYFAEIFRGGLLSIDKG 120 RGTP P +PVIG+YLVLDRFVAA L F+LNY AYFAEIFRGGLL+IDKG Sbjct: 61 RGTPLLLQLLFFCFGLPVLPVIGEYLVLDRFVAACLAFVLNYAAYFAEIFRGGLLAIDKG 120 Query: 121 QHEAAQVLGLSKWQTLRKVILAQMFRV 147 Q+EA++VLGL++WQT KVIL QMFRV Sbjct: 121 QYEASKVLGLNRWQTTTKVILPQMFRV 147 >C2TR22.1 C2TR22_BACCE Amino acid ABC transporter, permease protein Length = 219 Score = 184 bits (466), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 88/147 (59%), Positives = 106/147 (72%) Query: 1 MNIDYIIKIAGPMLEGARTTXXXXXXXXXXXXXXGMLVTLMAKSSIKPLAWIAHTYIYVM 60 M+ DYI I PMLEGA+ T G L+TL +S++KPL+W+A YIYV+ Sbjct: 1 MSFDYINSILMPMLEGAQMTVLLFLIAIVVSIPMGFLLTLAVRSNLKPLSWLAQGYIYVL 60 Query: 61 RGTPXXXXXXXXXXXXPQIPVIGQYLVLDRFVAASLGFILNYGAYFAEIFRGGLLSIDKG 120 RGTP P +PVIG+YLV+DRFVAA LGFILNY AYFAEIFRGGLL+IDKG Sbjct: 61 RGTPLLLQLLFICFGLPMLPVIGEYLVMDRFVAACLGFILNYAAYFAEIFRGGLLAIDKG 120 Query: 121 QHEAAQVLGLSKWQTLRKVILAQMFRV 147 Q+EA+QVLGLSKWQT+R+VIL QMFR+ Sbjct: 121 QYEASQVLGLSKWQTMRRVILPQMFRI 147 >Q74NN5.1 Q74NN5_BACC1 Amino acid ABC transporter, permease protein Length = 219 Score = 183 bits (464), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 88/147 (59%), Positives = 106/147 (72%) Query: 1 MNIDYIIKIAGPMLEGARTTXXXXXXXXXXXXXXGMLVTLMAKSSIKPLAWIAHTYIYVM 60 M+ DYI I PMLEGA+ T G L+TL +S++KPL+W+A YIYV+ Sbjct: 1 MSFDYINSILMPMLEGAQMTVLLFLIAIVVSIPMGFLLTLAVRSNLKPLSWLAQGYIYVL 60 Query: 61 RGTPXXXXXXXXXXXXPQIPVIGQYLVLDRFVAASLGFILNYGAYFAEIFRGGLLSIDKG 120 RGTP P +PVIG+YLV+DRFVAA LGFILNY AYFAEIFRGGLL+IDKG Sbjct: 61 RGTPLLLQLLFICFGLPLLPVIGEYLVMDRFVAACLGFILNYAAYFAEIFRGGLLAIDKG 120 Query: 121 QHEAAQVLGLSKWQTLRKVILAQMFRV 147 Q+EA+QVLGLSKWQT+R+VIL QMFR+ Sbjct: 121 QYEASQVLGLSKWQTMRRVILPQMFRI 147 >B7JU06.1 B7JU06_BACC0 Amino acid ABC transporter, permease protein Length = 219 Score = 183 bits (464), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 88/147 (59%), Positives = 106/147 (72%) Query: 1 MNIDYIIKIAGPMLEGARTTXXXXXXXXXXXXXXGMLVTLMAKSSIKPLAWIAHTYIYVM 60 M+ DYI I PMLEGA+ T G L+TL +S++KPL+W+A YIYV+ Sbjct: 1 MSFDYINSILMPMLEGAQMTVLLFLIAIVVSIPMGFLLTLAVRSNLKPLSWLAQGYIYVL 60 Query: 61 RGTPXXXXXXXXXXXXPQIPVIGQYLVLDRFVAASLGFILNYGAYFAEIFRGGLLSIDKG 120 RGTP P +PVIG+YLV+DRFVAA LGFILNY AYFAEIFRGGLL+IDKG Sbjct: 61 RGTPLLLQLLFICFGLPLLPVIGEYLVMDRFVAACLGFILNYAAYFAEIFRGGLLAIDKG 120 Query: 121 QHEAAQVLGLSKWQTLRKVILAQMFRV 147 Q+EA+QVLGLSKWQT+R+VIL QMFR+ Sbjct: 121 QYEASQVLGLSKWQTMRRVILPQMFRI 147 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.326 0.140 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 679,846,099 Number of extensions: 19967957 Number of successful extensions: 62744 Number of sequences better than 1.0e-05: 4017 Number of HSP's gapped: 60719 Number of HSP's successfully gapped: 4019 Length of query: 157 Length of database: 3,060,696,203 Length adjustment: 118 Effective length of query: 39 Effective length of database: 1,949,016,433 Effective search space: 76011640887 Effective search space used: 76011640887 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 125 (52.8 bits)