BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0579.0067.p (244 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KLT2.1 B3KLT2_9BACI ABC transporter related 349 1e-94 C0Z6B1.1 C0Z6B1_BREBN Amino acid ABC transporter ATP-binding pro... 340 5e-92 C2UNU4.1 C2UNU4_BACCE ABC transporter related protein 334 3e-90 C2QL32.1 C2QL32_BACCE ABC transporter related protein 334 3e-90 Q74NN4.1 Q74NN4_BACC1 Amino acid ABC transporter, ATP-binding pr... 334 4e-90 >B3KLT2.1 B3KLT2_9BACI ABC transporter related Length = 248 Score = 349 bits (896), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 163/242 (67%), Positives = 202/242 (83%) Query: 2 IEVRQLQKSFGSLDVLKKITFAVNPGEVVAVIGPSGSGKSTMLRSLVHLEEVTGGSIYIH 61 IEV ++KSFGSLDVLK ++F + EV+AVIGPSGSGKSTMLRSLVHLEE+ GGSI + Sbjct: 4 IEVTHMKKSFGSLDVLKDVSFEIQKNEVIAVIGPSGSGKSTMLRSLVHLEEINGGSIKVQ 63 Query: 62 GKPLIENGKYAGNTDIREITATMGMVFQHFNLFPHLSVRGNLELAPRTLKRGNPQEIAAK 121 + L+++G Y+ I+ IT+ MGMVFQHFNLFPHL+V+ NL LAP+ +K+ + +E+ Sbjct: 64 DQYLVKDGVYSSPPQIKAITSRMGMVFQHFNLFPHLTVQENLGLAPKHVKKQSKEEVRTN 123 Query: 122 SKELLSKVGLADKADVYPSMLSGGQKQRVAIARALMLNPDILLFDEPTSALDPELTGEVL 181 LL KVGL+DKADVYP LSGGQKQRVAIARALM+NPDI+LFDEPTSALDPELTGEVL Sbjct: 124 GTALLQKVGLSDKADVYPGNLSGGQKQRVAIARALMMNPDIMLFDEPTSALDPELTGEVL 183 Query: 182 RVIRQLAEENMTMIIVTHEMSFARDVADRVFFMDNGEIAESGPPEQIFGSPRLERTRTFL 241 VI+QLAEE+MTM+IVTHEMSFA++VADR+ FMD+G++ E+G P+QIF P++ERTR FL Sbjct: 184 AVIKQLAEEHMTMVIVTHEMSFAKEVADRIIFMDHGQVVEAGTPDQIFNQPKMERTREFL 243 Query: 242 NR 243 NR Sbjct: 244 NR 245 >C0Z6B1.1 C0Z6B1_BREBN Amino acid ABC transporter ATP-binding protein Length = 248 Score = 340 bits (873), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 160/243 (65%), Positives = 203/243 (83%) Query: 1 MIEVRQLQKSFGSLDVLKKITFAVNPGEVVAVIGPSGSGKSTMLRSLVHLEEVTGGSIYI 60 +I+V L+KSFG+ +VL+ ++F+V EVVAVIGPSGSGKSTMLRSLV+LE+V GGSI + Sbjct: 3 IIQVSNLKKSFGNQEVLRDVSFSVKKNEVVAVIGPSGSGKSTMLRSLVNLEQVNGGSIRV 62 Query: 61 HGKPLIENGKYAGNTDIREITATMGMVFQHFNLFPHLSVRGNLELAPRTLKRGNPQEIAA 120 L+++G YAGN +I++IT+ MGMVFQHFNLFPHL+V+ NLE+APR +K +I Sbjct: 63 QDDYLVKDGVYAGNQEIKQITSRMGMVFQHFNLFPHLTVKENLEIAPRVVKGEASSDIRK 122 Query: 121 KSKELLSKVGLADKADVYPSMLSGGQKQRVAIARALMLNPDILLFDEPTSALDPELTGEV 180 S ELL KVGL+DKAD YP+ LSGGQKQRVAIARALM+NP ILLFDEPTSALDPELTGEV Sbjct: 123 MSAELLEKVGLSDKADAYPAKLSGGQKQRVAIARALMMNPQILLFDEPTSALDPELTGEV 182 Query: 181 LRVIRQLAEENMTMIIVTHEMSFARDVADRVFFMDNGEIAESGPPEQIFGSPRLERTRTF 240 L+VI+QLA+E+MTM++VTHEM FAR+VA+++ FMD GE ESG PEQ+F + + ERT++F Sbjct: 183 LQVIKQLAQEHMTMMVVTHEMGFAREVANQIMFMDKGEFVESGTPEQLFTNAKFERTKSF 242 Query: 241 LNR 243 L+R Sbjct: 243 LHR 245 >C2UNU4.1 C2UNU4_BACCE ABC transporter related protein Length = 251 Score = 334 bits (857), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 156/243 (64%), Positives = 202/243 (83%) Query: 1 MIEVRQLQKSFGSLDVLKKITFAVNPGEVVAVIGPSGSGKSTMLRSLVHLEEVTGGSIYI 60 +IE+ L+KS+G+LDVLK+I+F +N +V+AVIGPSGSGKSTMLRSLV+LEE+ GSI + Sbjct: 6 IIEISNLKKSYGNLDVLKRISFDINKNDVIAVIGPSGSGKSTMLRSLVYLEELDNGSICV 65 Query: 61 HGKPLIENGKYAGNTDIREITATMGMVFQHFNLFPHLSVRGNLELAPRTLKRGNPQEIAA 120 G L+++G YA +IR+IT MGMVFQHFNLFPHL+V+ NLELAP+ LK+ +I Sbjct: 66 SGDYLVKDGVYAIPQEIRQITGKMGMVFQHFNLFPHLTVKENLELAPKMLKKELSADIHQ 125 Query: 121 KSKELLSKVGLADKADVYPSMLSGGQKQRVAIARALMLNPDILLFDEPTSALDPELTGEV 180 +S ELL ++GL+D+A+ YP+ LSGGQKQRVAIARALM+NP+ +LFDEPTSALDPELTGEV Sbjct: 126 RSGELLERIGLSDRANAYPANLSGGQKQRVAIARALMMNPEFMLFDEPTSALDPELTGEV 185 Query: 181 LRVIRQLAEENMTMIIVTHEMSFARDVADRVFFMDNGEIAESGPPEQIFGSPRLERTRTF 240 L+V++ LA+E MTMI+VTHEM FA++VA++V FMDNGEI ESG P +F +P+ ERT+ F Sbjct: 186 LQVMKDLAQEQMTMIVVTHEMGFAKEVANKVIFMDNGEIVESGNPTDLFMNPKFERTKAF 245 Query: 241 LNR 243 LNR Sbjct: 246 LNR 248 >C2QL32.1 C2QL32_BACCE ABC transporter related protein Length = 251 Score = 334 bits (857), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 156/243 (64%), Positives = 202/243 (83%) Query: 1 MIEVRQLQKSFGSLDVLKKITFAVNPGEVVAVIGPSGSGKSTMLRSLVHLEEVTGGSIYI 60 +IE+ L+KS+G+LDVLK+I+F +N +V+AVIGPSGSGKSTMLRSLV+LEE+ GSI + Sbjct: 6 IIEISNLKKSYGNLDVLKRISFDINKNDVIAVIGPSGSGKSTMLRSLVYLEELDNGSICV 65 Query: 61 HGKPLIENGKYAGNTDIREITATMGMVFQHFNLFPHLSVRGNLELAPRTLKRGNPQEIAA 120 G L+++G YA +IR+IT MGMVFQHFNLFPHL+V+ NLELAP+ LK+ +I Sbjct: 66 SGDYLVKDGVYAIPQEIRQITGKMGMVFQHFNLFPHLTVKENLELAPKMLKKELSADIHQ 125 Query: 121 KSKELLSKVGLADKADVYPSMLSGGQKQRVAIARALMLNPDILLFDEPTSALDPELTGEV 180 +S ELL ++GL+D+A+ YP+ LSGGQKQRVAIARALM+NP+ +LFDEPTSALDPELTGEV Sbjct: 126 RSGELLERIGLSDRANAYPANLSGGQKQRVAIARALMMNPEFMLFDEPTSALDPELTGEV 185 Query: 181 LRVIRQLAEENMTMIIVTHEMSFARDVADRVFFMDNGEIAESGPPEQIFGSPRLERTRTF 240 L+V++ LA+E MTMI+VTHEM FA++VA++V FMDNGEI ESG P +F +P+ ERT+ F Sbjct: 186 LQVMKDLAQEQMTMIVVTHEMGFAKEVANKVIFMDNGEIVESGNPTDLFMNPKFERTKAF 245 Query: 241 LNR 243 LNR Sbjct: 246 LNR 248 >Q74NN4.1 Q74NN4_BACC1 Amino acid ABC transporter, ATP-binding protein Length = 248 Score = 334 bits (857), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 156/243 (64%), Positives = 202/243 (83%) Query: 1 MIEVRQLQKSFGSLDVLKKITFAVNPGEVVAVIGPSGSGKSTMLRSLVHLEEVTGGSIYI 60 +IE+ L+KS+G+LDVLK+I+F +N +V+AVIGPSGSGKSTMLRSLV+LEE+ GSI + Sbjct: 3 IIEISNLKKSYGNLDVLKRISFDINKNDVIAVIGPSGSGKSTMLRSLVYLEELDNGSICV 62 Query: 61 HGKPLIENGKYAGNTDIREITATMGMVFQHFNLFPHLSVRGNLELAPRTLKRGNPQEIAA 120 G L+++G YA +IR+IT MGMVFQHFNLFPHL+V+ NLELAP+ LK+ +I Sbjct: 63 SGDYLVKDGVYAIPQEIRQITGKMGMVFQHFNLFPHLTVKENLELAPKMLKKELSADIHQ 122 Query: 121 KSKELLSKVGLADKADVYPSMLSGGQKQRVAIARALMLNPDILLFDEPTSALDPELTGEV 180 +S ELL ++GL+D+A+ YP+ LSGGQKQRVAIARALM+NP+ +LFDEPTSALDPELTGEV Sbjct: 123 RSGELLERIGLSDRANAYPANLSGGQKQRVAIARALMMNPEFMLFDEPTSALDPELTGEV 182 Query: 181 LRVIRQLAEENMTMIIVTHEMSFARDVADRVFFMDNGEIAESGPPEQIFGSPRLERTRTF 240 L+V++ LA+E MTMI+VTHEM FA++VA++V FMDNGEI ESG P +F +P+ ERT+ F Sbjct: 183 LQVMKDLAQEQMTMIVVTHEMGFAKEVANKVIFMDNGEIVESGNPTDLFMNPKFERTKAF 242 Query: 241 LNR 243 LNR Sbjct: 243 LNR 245 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.136 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,431,384,924 Number of extensions: 58502474 Number of successful extensions: 580163 Number of sequences better than 1.0e-05: 100494 Number of HSP's gapped: 404015 Number of HSP's successfully gapped: 110967 Length of query: 244 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 112 Effective length of database: 1,817,122,223 Effective search space: 203517688976 Effective search space used: 203517688976 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)