BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0579.0063.p (1033 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DFV3.1 B1DFV3_9BACL Fibronectin type III domain protein 164 5e-38 A3DF10.1 A3DF10_CLOTH Cellulosome anchoring protein, cohesin region 132 2e-28 P71143.1 P71143_CLOTM Scaffolding dockerin binding protein A 132 2e-28 B4BET0.1 B4BET0_CLOTM Cellulosome anchoring protein cohesin region 132 2e-28 C1S714.1 C1S714_9SPHI Endoglucanase 109 2e-21 >B1DFV3.1 B1DFV3_9BACL Fibronectin type III domain protein Length = 1506 Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 102/288 (35%), Positives = 147/288 (51%), Gaps = 32/288 (11%) Query: 732 YQLLLKLDGQPVSTVKNG---VLLELGYALKPDQQPGKVVAYTLLDDGTPQIVRYGRYDP 788 Y L +DG V T NG V E+ Y L+ Q+PG V+A + D G + V+ RYD Sbjct: 1245 YDFNLLVDGTAVHTF-NGYHPVKAEIPYNLQSGQKPGTVIASYVGDGGKLEPVKNSRYDA 1303 Query: 789 SFDKLTFQLQTLQPFGAAYHELSFSDIGTVPWAKESIEELAAKGMLRGPGNGRFAPEAEI 848 L F + +F+D G+V WA+E+I+ LAA+ ++ G G FAP+ ++ Sbjct: 1304 LSGMLVFYPPHFSQYAITAASPTFTDAGSVKWAQEAIDGLAARQIVNGVQEGHFAPQNKV 1363 Query: 849 TRAEFAMLLMNIFDLADAIPXXXXXXXXXXXXXXXXXXKQTAEKLGHRKLTDMDNSAWYY 908 TRAEF +L+ FDL + TD+ AWY Sbjct: 1364 TRAEFISMLVRTFDL--------------------------LQPSAVSSFTDVKQGAWYE 1397 Query: 909 QAVTAAQLLGIAEGRTDGSFGVNDPISRQELAVMVYRLIPVAGLNGMYMQKAPEEVFSDE 968 V +A+ LGI +G +DGSFGVN I+R+E+A M++ GL P ++DE Sbjct: 1398 HEVASAEKLGIVKGYSDGSFGVNRTITREEMAAMIWNAANAFGLKP--STGIPATGYTDE 1455 Query: 969 SSIAGYARESVISLQRAGLLQGTAQGMFKPRSGTTRAEAAVLLHRLYK 1016 +SI+ YA+E+V+ L AGLL G G F P TRAEAAVL++R+ + Sbjct: 1456 ASISSYAKEAVLQLSGAGLLNGYENGSFMPSGNATRAEAAVLIYRILQ 1503 Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 62/201 (30%), Positives = 97/201 (48%), Gaps = 21/201 (10%) Query: 27 DKEAPSTPAGLEVAIERR--TSVDLRWNQATDAGSGIKGYRVSYADGTF--IADTFGTS- 81 D APS P ++ R T+V L W ATD + Y V Y DG IA G + Sbjct: 922 DTTAPSWPKTAKLYYTERGETNVKLYWANATD-DFAVSRYEV-YQDGVAAPIATVDGNAV 979 Query: 82 --YSISGLTPETEYAFQVQALDYAGNVSAASAHVRAVTKGEDREAPALPQGLRVTDTSAS 139 ++++ L P TEYA++V A+D G S V+ T D EAP++P L V++ ++ Sbjct: 980 RQFTVTNLDPNTEYAYRVVAVDGEGTASETLGPVQLRTLAADAEAPSVPTNLHVSNVTSQ 1039 Query: 140 RIMLEWQANTEP-DLMGYNLYRGTAADFTPDASNKIASLLTSNSYADRSGIEEKRTYYYK 198 ++ W A T+ + GY++Y G + T +T SY +G+ Y ++ Sbjct: 1040 SAVISWSAATDNVGVTGYDVYAGDSKQAT----------VTGTSYT-ATGLTPDTLYSFR 1088 Query: 199 LEAVDSSGNSSGSTAPVQAVT 219 + A D+ GN S + V+A T Sbjct: 1089 VAARDARGNESAKSTAVEART 1109 >A3DF10.1 A3DF10_CLOTH Cellulosome anchoring protein, cohesin region Length = 631 Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 98/336 (29%), Positives = 160/336 (47%), Gaps = 38/336 (11%) Query: 686 ADILLRADTLREFGNASMLELFFGKASQVKQSGIGDAAAGWAYSPAYQLLLKLDGQPV-- 743 A++L AD + N S++E K +V + G + P + + +DG+ V Sbjct: 326 ANMLNTADISKLVKNDSVVEFVIRKV-KVDELG-AELKEKIGNRPVIDISVVVDGKKVEW 383 Query: 744 STVKNGVLLELGYALKPD----QQPGKVVAYTLLDDGTPQIVRYGRYDPSFDKLTFQLQT 799 S K V + + Y KPD + +V + D G V G+Y+PS +TF+ Sbjct: 384 SNYKAKVKISIPY--KPDAKELENHEHIVVLHIDDAGKAVSVPSGKYEPSLGVVTFETNH 441 Query: 800 LQPFGAAYHELSFSDIGTVPWAKESIEELAAKGMLRGPGNGRFAPEAEITRAEFAMLLMN 859 L + +Y +F+DIG+ WAK+ IE LA+KG++ G + F P+A+ITRA+F +LL+ Sbjct: 442 LSKYAVSYVYKTFADIGSYAWAKKQIEVLASKGVINGTSDTTFTPQADITRADFMILLVK 501 Query: 860 IFDLADAIPXXXXXXXXXXXXXXXXXXKQTAEKLGHRKLTDMDNSAWYYQAVTAAQLLGI 919 L TAE + D+ +YY+ V A+ LGI Sbjct: 502 ALGL-------------------------TAEVTSN--FDDVSEKDYYYEYVGIAKELGI 534 Query: 920 AEGRTDGSFGVNDPISRQELAVMVYRLIPVAGLNGMYMQKAPEEVFSDESSIAGYARESV 979 G + F I+RQ++ V+ + +AG +A E FSD+ IA YA E V Sbjct: 535 TTGVGNNKFNPKAKITRQDMMVLTTNALRIAGKISSTGTRADVERFSDKDQIASYAVEGV 594 Query: 980 ISLQRAGLLQGTAQGMFKPRSGTTRAEAAVLLHRLY 1015 +L + G++ G+ + PR +RAE A +++++Y Sbjct: 595 ATLVKEGIVVGSGD-IINPRGNASRAELAAIIYKIY 629 >P71143.1 P71143_CLOTM Scaffolding dockerin binding protein A Length = 631 Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 98/336 (29%), Positives = 160/336 (47%), Gaps = 38/336 (11%) Query: 686 ADILLRADTLREFGNASMLELFFGKASQVKQSGIGDAAAGWAYSPAYQLLLKLDGQPV-- 743 A++L AD + N S++E K +V + G + P + + +DG+ V Sbjct: 326 ANMLNTADISKLVKNDSVVEFVIRKV-KVDELG-AELKEKIGNRPVIDISVVVDGKKVEW 383 Query: 744 STVKNGVLLELGYALKPD----QQPGKVVAYTLLDDGTPQIVRYGRYDPSFDKLTFQLQT 799 S K V + + Y KPD + +V + D G V G+Y+PS +TF+ Sbjct: 384 SNYKAKVKISIPY--KPDAKELENHEHIVVLHIDDAGKAVSVPSGKYEPSLGVVTFETNH 441 Query: 800 LQPFGAAYHELSFSDIGTVPWAKESIEELAAKGMLRGPGNGRFAPEAEITRAEFAMLLMN 859 L + +Y +F+DIG+ WAK+ IE LA+KG++ G + F P+A+ITRA+F +LL+ Sbjct: 442 LSKYAVSYVYKTFADIGSYAWAKKQIEVLASKGVINGTSDTTFTPQADITRADFMILLVK 501 Query: 860 IFDLADAIPXXXXXXXXXXXXXXXXXXKQTAEKLGHRKLTDMDNSAWYYQAVTAAQLLGI 919 L TAE + D+ +YY+ V A+ LGI Sbjct: 502 ALGL-------------------------TAEVTSN--FDDVSEKDYYYEYVGIAKELGI 534 Query: 920 AEGRTDGSFGVNDPISRQELAVMVYRLIPVAGLNGMYMQKAPEEVFSDESSIAGYARESV 979 G + F I+RQ++ V+ + +AG +A E FSD+ IA YA E V Sbjct: 535 TTGVGNNKFNPKAKITRQDMMVLTTNALRIAGKISSTGTRADVERFSDKDQIASYAVEGV 594 Query: 980 ISLQRAGLLQGTAQGMFKPRSGTTRAEAAVLLHRLY 1015 +L + G++ G+ + PR +RAE A +++++Y Sbjct: 595 ATLVKEGIVVGSGD-IINPRGNASRAELAAIIYKIY 629 >B4BET0.1 B4BET0_CLOTM Cellulosome anchoring protein cohesin region Length = 631 Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 98/336 (29%), Positives = 160/336 (47%), Gaps = 38/336 (11%) Query: 686 ADILLRADTLREFGNASMLELFFGKASQVKQSGIGDAAAGWAYSPAYQLLLKLDGQPV-- 743 A++L AD + N S++E K +V + G + P + + +DG+ V Sbjct: 326 ANMLNTADISKLVKNDSVVEFVIRKV-KVDELG-AELKEKIGNRPVIDISVVVDGKKVEW 383 Query: 744 STVKNGVLLELGYALKPD----QQPGKVVAYTLLDDGTPQIVRYGRYDPSFDKLTFQLQT 799 S K V + + Y KPD + +V + D G V G+Y+PS +TF+ Sbjct: 384 SNYKAKVKISIPY--KPDAKELENHEHIVVLHIDDAGKAVSVPSGKYEPSLGVVTFETNH 441 Query: 800 LQPFGAAYHELSFSDIGTVPWAKESIEELAAKGMLRGPGNGRFAPEAEITRAEFAMLLMN 859 L + +Y +F+DIG+ WAK+ IE LA+KG++ G + F P+A+ITRA+F +LL+ Sbjct: 442 LSKYAVSYVYKTFADIGSYAWAKKQIEVLASKGVINGTSDTTFTPQADITRADFMILLVK 501 Query: 860 IFDLADAIPXXXXXXXXXXXXXXXXXXKQTAEKLGHRKLTDMDNSAWYYQAVTAAQLLGI 919 L TAE + D+ +YY+ V A+ LGI Sbjct: 502 ALGL-------------------------TAEVTSN--FDDVSEKDYYYEYVGIAKELGI 534 Query: 920 AEGRTDGSFGVNDPISRQELAVMVYRLIPVAGLNGMYMQKAPEEVFSDESSIAGYARESV 979 G + F I+RQ++ V+ + +AG +A E FSD+ IA YA E V Sbjct: 535 TTGVGNNKFNPKAKITRQDMMVLTTNALRIAGKISSTGTRADVERFSDKDQIASYAVEGV 594 Query: 980 ISLQRAGLLQGTAQGMFKPRSGTTRAEAAVLLHRLY 1015 +L + G++ G+ + PR +RAE A +++++Y Sbjct: 595 ATLVKEGIVVGSGD-IINPRGNASRAELAAIIYKIY 629 >C1S714.1 C1S714_9SPHI Endoglucanase Length = 717 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 104/326 (31%), Positives = 158/326 (48%), Gaps = 31/326 (9%) Query: 34 PAGLEVAIERRTSVDLRWNQATDAGSGIKGYRVSYADGTFIADTFGTSYSISGLTPETEY 93 PA L T+V++ W D+ +K +S T I +YS +GLT T Y Sbjct: 331 PAQLNAYSVSPTAVNISW--PADSTGILKRATISGGPYTVIDSLTAANYSDTGLTANTTY 388 Query: 94 AFQVQALDYAGNVSAASAHVRAVTKGEDREAPALPQGLRVTDTSASRIMLEWQANTEPDL 153 + A++ +S VT AP LP L +D I L W + Sbjct: 389 YY---AINDGPEIS--------VTTDNIGYAPDLPMYL-TSDAGNQVIQLNWWK-SAVGA 435 Query: 154 MGYNLYRGTAADFTPDASNKIASLLTSNSYADRSGIEEKRTYYYKLEAVDSSGNSSGSTA 213 YN+YR TA IA+ +T +Y D S + TYYY++ +V++ +S G Sbjct: 436 TSYNVYRSTALT---GPYELIAAGVTGITYTDAS-VTNDITYYYRISSVNTVESSLGH-- 489 Query: 214 PVQAVTPADERLDIIVDNRDSGFASDGQWTSSSWSASRFGTDYLHDGNVA---GKWAKWT 270 V A P+ L IVDN + + G WT S+ + + T+Y+ DGN GK ++T Sbjct: 490 -VVADMPSANML--IVDNIAA--VATGSWTGSTSAPGYYSTNYMTDGNTGVTGGKSIRFT 544 Query: 271 PYVTVPGQYNVYMLWNASPNRGYNLPLEITHEGGKDTAPRIHQTNNDNMWVYIGTYTLAA 330 P + V G Y+VYM W + NR N P+++ ++GG ++ I+Q ++ +W Y+GTY AA Sbjct: 545 PDLPVAGAYDVYMRWASGTNRASNTPVDVHYDGGSNSY-LINQQIDNGVWKYLGTYNFAA 603 Query: 331 GTGNSVKLTTNGTN-TTVADAVKFSL 355 GT +V + + N +ADAVKF L Sbjct: 604 GTTGNVLIRNDSANGYVIADAVKFVL 629 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.313 0.130 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 6,302,544,706 Number of extensions: 274819796 Number of successful extensions: 551070 Number of sequences better than 1.0e-05: 903 Number of HSP's gapped: 550989 Number of HSP's successfully gapped: 1053 Length of query: 1033 Length of database: 3,060,696,203 Length adjustment: 146 Effective length of query: 887 Effective length of database: 1,685,228,013 Effective search space: 1494797247531 Effective search space used: 1494797247531 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 137 (57.4 bits)