BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0579.0052.p (233 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B6G235.1 B6G235_9CLOT Putative uncharacterized protein 103 1e-20 A7VDJ9.1 A7VDJ9_9CLOT Putative uncharacterized protein 100 2e-19 C4ZDG2.1 C4ZDG2_9FIRM Putative uncharacterized protein 99 2e-19 C4Z4W7.1 C4Z4W7_9FIRM Putative uncharacterized protein 94 7e-18 C4IAX1.1 C4IAX1_CLOBU Putative sensor histidine kinase 91 1e-16 >B6G235.1 B6G235_9CLOT Putative uncharacterized protein Length = 450 Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 67/234 (28%), Positives = 121/234 (51%), Gaps = 9/234 (3%) Query: 1 VMIIYIFDTIVDKFQFKHENARLEQQMDYQDANYEKTVHSFKSIKRIIHDTNQQLLYIEE 60 + II +IV ++ K+EN L + +D + NY + + ++ + HD ++ I+E Sbjct: 216 IFIIMTMKSIVKDYKIKNENKILRESVDKEVKNYIASSRENQKVREMYHDIKNHIICIDE 275 Query: 61 CIKRNEPAAALEHIRT---TLNKVEGAYQRVNTGHLVIDALVTNTLNIGQANGIRIDTKL 117 K A E+I+ +L K E NTGH++ D+++ N ++ GI + K+ Sbjct: 276 LYKSGNSELAGEYIQKIEGSLKKYESVRNEFNTGHIISDSILKNKKSMCDEYGINFECKV 335 Query: 118 NLYSPELSIDRYDLCVVLGNMLDNAIEASKQVKIAEDRYVVI--TIFSNDTALFIHIV-- 173 + + +D D C +L N+LDNAIEA V+ DRY+ I +I +N + L + Sbjct: 336 DFSRYDF-LDMADFCTILSNLLDNAIEACLHVE-HSDRYIKISNSIVNNFSLLIVENSKE 393 Query: 174 NYMEQDVAYLRSQKPNPENHGIGLTNIARICDKYGGHMTIETKQKTFHNMVMLP 227 N +++D + + + K + HGIG+ N+ +KY G M I+ + +F +M+P Sbjct: 394 NEIKKDGSKILTSKKDKSIHGIGIDNVRSCVEKYNGDMKIDYDESSFKVRIMIP 447 >A7VDJ9.1 A7VDJ9_9CLOT Putative uncharacterized protein Length = 413 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 63/217 (29%), Positives = 111/217 (51%), Gaps = 15/217 (6%) Query: 18 HENARLEQQMDYQDANYEKTVHSFKSIKRIIHDTNQQLLYIEECIKRNEPAAALEHIRTT 77 E +L +Q++YQ Y++ ++K+I+ +HD + L YIE C+ + + R T Sbjct: 199 QEAGQLTEQVNYQRQKYQQLGDAYKNIRGFMHDIKKHLFYIETCVNEEHYDRIIPYARET 258 Query: 78 LNKVEGAYQRVNTGHLVIDALVTNTLNIGQANGIRIDTKLNLYSPELSIDRYDLCVVLGN 137 ++ +E Y VNTG+LVIDA ++N + + I++ TKL + + + D Y + ++LGN Sbjct: 259 MSDLEARYCTVNTGNLVIDAFISNLMLRTARHNIKLTTKLKIDNDLVPCDDYHMTIILGN 318 Query: 138 MLDNAIEASKQVKIAEDRYVVITIFSNDTALFIHIVNYMEQDVAYLRSQKPNPEN----- 192 +LDNA+ A + + E + I I + + I+I N + +KP PE+ Sbjct: 319 LLDNALNACLEEQSGE---ININIQTIEHTFTIYITNTYHFPIG----EKP-PEDIENLD 370 Query: 193 --HGIGLTNIARICDKYGGHMTIETKQKTFHNMVMLP 227 HG GL N+ + GG I + + V++P Sbjct: 371 FIHGYGLKNVKNSAEACGGFCLINYENGIYSVTVIIP 407 >C4ZDG2.1 C4ZDG2_9FIRM Putative uncharacterized protein Length = 311 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 62/210 (29%), Positives = 107/210 (50%), Gaps = 13/210 (6%) Query: 24 EQQMDYQDANYEKTVHSFKSIKRIIHDTNQQLLYIEECIKRNEPAAALEHIRTTLNKVEG 83 ++Q+++Q YE+ ++K+I+ +HDT + L YIE C+ + + + + ++ +E Sbjct: 105 KEQIEFQRNKYEQLGAAYKNIRSFMHDTKKHLFYIENCVTEKKYDDIIPYSKEIMHDLES 164 Query: 84 AYQRVNTGHLVIDALVTNTLNIGQANGIRIDTKLNLYSPELSIDRYDLCVVLGNMLDNAI 143 Y +NTG+LVIDA V+N L +A GI + T L + ++ Y L ++LGN+LDNA+ Sbjct: 165 RYCTINTGNLVIDAFVSNLLLQTKAQGITLHTNLKFDKATIPVNDYHLTIILGNLLDNAL 224 Query: 144 EASKQVKIAEDRYVVITIFSNDTALFIHIVN-YMEQDVAYLRSQKPNPEN-----HGIGL 197 A + A + V T+ D IH+ N Y+ D + P+ HG GL Sbjct: 225 NACRGQIGANIKVAVRTV---DGTFTIHVANTYVIAD----PDKAPDDFEKIDFIHGYGL 277 Query: 198 TNIARICDKYGGHMTIETKQKTFHNMVMLP 227 N+ + GG I + + V++P Sbjct: 278 KNVKDSAEACGGFCVIHHENDVYSATVIIP 307 >C4Z4W7.1 C4Z4W7_9FIRM Putative uncharacterized protein Length = 415 Score = 94.4 bits (233), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 68/225 (30%), Positives = 119/225 (52%), Gaps = 13/225 (5%) Query: 2 MIIYIF-DTIVDKFQFKHENARLEQQMDYQDANYEKTVHSFKSIKRIIHDTNQQLLYIEE 60 +++Y+F ++D++ F EN L+QQM Y DA + + + K I+ I HD + I Sbjct: 188 LMLYVFYSNMLDRYIFMQENENLKQQMHYYDAQMKTNIENDKKIRAIRHDMKHHIREINS 247 Query: 61 CIKRNEPAAALEHIRTTLNKVEGAYQRVNTGHLVIDALVTNTLNIGQANGIRIDTKLNLY 120 + + ++ + + G+ NTG++ +D + N N G+ I+T +N+ Sbjct: 248 LAEAGKLYELKKYSDELMGDINGSETVFNTGNITLDG-IFNYYN-GKFKDKCIETDINVV 305 Query: 121 SPE-LSIDRYDLCVVLGNMLDNAIEASKQVKIAEDRYVVITIFSNDTALFIHIVNY---- 175 PE + I D+ +++GN+LDNA E + +VK D Y+ + + N L+I++ N Sbjct: 306 VPENMGISAMDINIIMGNLLDNAYENAIKVK---DSYIKVNVKYNGNMLYIYVSNTFDGK 362 Query: 176 MEQDVAYLRSQKPNPENHGIGLTNIARICDKYGGHMTIETKQKTF 220 +E++ + S K + HG GL NI RI +KYGG++ IE K F Sbjct: 363 VEEENGNIVSLK--GKEHGYGLENINRIAEKYGGNIKIEHSDKRF 405 >C4IAX1.1 C4IAX1_CLOBU Putative sensor histidine kinase Length = 605 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 64/215 (29%), Positives = 108/215 (50%), Gaps = 18/215 (8%) Query: 17 KHENARLEQQMDYQDANYEKTVHSFKSIKRIIHDTNQQLLYIEECIKRNEPAAA---LEH 73 K EN L++ ++ Q +Y S+ IK+ HD L+ + + R E A LE Sbjct: 391 KIENTYLQRLIESQIEHYRNIDKSYSMIKKYKHDMKNHLVCLNHLLNRQEIEKAKSYLEQ 450 Query: 74 IRTTLNKVEGAYQRVNTGHLVIDALVTNTLNIGQANGIRIDTKLNLYSPELSIDRYDLCV 133 I + K E + +TG+ ++DA++T ++ GI+ T + + + + ID D C+ Sbjct: 451 ISEGILKGEDIF---DTGNYILDAIITEKSITAKSKGIKFTTSI-MINKNIKIDPVDWCI 506 Query: 134 VLGNMLDNAIEASKQVKIAED--RYVVITIFSNDTALFIHIVNYMEQDV-----AYLRSQ 186 + GN LDNAIEA ++V ED +++ + + S + I+N E D YL ++ Sbjct: 507 IFGNALDNAIEACEKV---EDNRKFISLKLLSRSNTFIVKIINSSENDFIIEKKKYLTTK 563 Query: 187 KPNPENHGIGLTNIARICDKYGGHMTIETKQKTFH 221 K N E HGIG+ NI + +KY G + ++ F Sbjct: 564 K-NKEEHGIGMDNIRKSIEKYDGILNTRYEKNLFE 597 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.136 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,293,844,419 Number of extensions: 49432563 Number of successful extensions: 143920 Number of sequences better than 1.0e-05: 257 Number of HSP's gapped: 143718 Number of HSP's successfully gapped: 257 Length of query: 233 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 102 Effective length of database: 1,826,543,238 Effective search space: 186307410276 Effective search space used: 186307410276 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)