BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0579.0049.p (155 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B6FWR7.1 B6FWR7_9CLOT Putative uncharacterized protein 70 6e-11 A7VGN7.1 A7VGN7_9CLOT Putative uncharacterized protein 64 5e-09 C4ZDG1.1 C4ZDG1_9FIRM Two-component response regulator 59 2e-07 B6FWL1.1 B6FWL1_9CLOT Putative uncharacterized protein 58 3e-07 A7VDK0.1 A7VDK0_9CLOT Putative uncharacterized protein 58 3e-07 >B6FWR7.1 B6FWR7_9CLOT Putative uncharacterized protein Length = 171 Score = 70.1 bits (170), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 40/140 (28%), Positives = 74/140 (52%), Gaps = 6/140 (4%) Query: 1 VESFDVMTFQYLIKPIAPQIFEEKVIKLCQYFQALEKKFMIIKSAYEEVVLKYDDIIAIE 60 +E ++V ++YL+KP+ + +I C L KK ++IK V L DI+ IE Sbjct: 27 LEGYEVKAYRYLLKPVKYDDLKTSLIN-CLNDINLLKKSIVIKEGDARVKLSLKDIMYIE 85 Query: 61 AAKSLTIKNKLNFITLNQLYESKGILAEYALALKDNHFLQIHRSVIINLLHVRKFSSGVV 120 + N + TLN +YE+KG ++ + + + F++ H+S ++NL +++ Sbjct: 86 VQR-----NDITVHTLNGIYETKGTMSNFESEINSDTFIRCHKSYLVNLEYIKSVKRYTA 140 Query: 121 LMTGGMEFPIGRSKLKEVKD 140 ++ E P+ R+K KE+KD Sbjct: 141 ILENDEEVPLSRNKYKEIKD 160 >A7VGN7.1 A7VGN7_9CLOT Putative uncharacterized protein Length = 240 Score = 63.9 bits (154), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 74/148 (50%), Gaps = 12/148 (8%) Query: 3 SFDVMTFQYLIKPIAPQIFEEKVIKLCQYFQALEKKFMIIKSAYEEV--VLKYDDIIAIE 60 +FDV FQ+L KP+A + ++ L Q + + ++ V +K DI+ +E Sbjct: 96 AFDVQPFQFLDKPVAA---DRLLLTLDQVLERVVNDTELLTFCQNRVYYSIKIGDIVYLE 152 Query: 61 AAKSLTIKNKLNFITLN--QLYESKGILAEYALALKDNHFLQIHRSVIINLLHVRKFSSG 118 + K + F T + Y+ L EY L + F++IHRS ++N H+R S Sbjct: 153 SNKRMITA----FCTSGTYEFYDKLEHLEEY-LGTRQQRFVRIHRSFLVNTNHIRTISYT 207 Query: 119 VVLMTGGMEFPIGRSKLKEVKDYYTKFM 146 V M+ G+E I R K V++YYTK++ Sbjct: 208 CVGMSNGVELMISRDKRSRVREYYTKWL 235 >C4ZDG1.1 C4ZDG1_9FIRM Two-component response regulator Length = 241 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/148 (27%), Positives = 75/148 (50%), Gaps = 6/148 (4%) Query: 2 ESFDVMTFQYLIKPIAPQIFEEKVIKLCQYFQALEKKFMIIKSAYEEVVLKYDDIIAIEA 61 ESF+V FQ++ KP+ + + + K +II + E+ + D++ I + Sbjct: 95 ESFEVQPFQFITKPVDYTAIYKLFNNIIKKLYRNSKSIVIIDTDGEKNFVPLSDLLYISS 154 Query: 62 AKSLTIKNKLN--FITLNQLYESKGILAEYALALKDNHFLQIHRSVIINLLHVRKFSSGV 119 K +NKL+ + ++ SKG L+E L + F+ R ++NL +R +S Sbjct: 155 MK----ENKLHLRYQLTDRALISKGTLSEAEKRLSSHGFVSPSRGFLVNLHQIRSITSTR 210 Query: 120 VLMTGGMEFPIGRSKLKEVKDYYTKFMI 147 +L+ G E PI R + KE+++ Y++ +I Sbjct: 211 LLLNNGFELPISRRRSKELQNIYSQHII 238 >B6FWL1.1 B6FWL1_9CLOT Putative uncharacterized protein Length = 238 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 44/144 (30%), Positives = 77/144 (53%), Gaps = 11/144 (7%) Query: 2 ESFDVMTFQYLIKPIAPQIFEEKVIKLCQYFQALEKK-FMIIKS--AYEEVVLKYDDIIA 58 E+F+V F+++ KPI ++ E K +K C A ++ F+ IK+ +++V + D+I Sbjct: 95 EAFEVRAFRFIKKPIQHEVIE-KNLKECVVEVAKKRGCFLKIKTDNGFKKVYSR--DLIY 151 Query: 59 IEAAKSLTIKNKLNFITLNQLYESKGILAEYALALKDNHFLQIHRSVIINLLHVRKFSSG 118 IEA I K+ T E +G L + + F+Q HRS I+N++++ + + Sbjct: 152 IEA-----INKKIKLCTKEGELECRGNLNDIVSNFEKQLFIQCHRSYIVNMIYIEEIYNR 206 Query: 119 VVLMTGGMEFPIGRSKLKEVKDYY 142 ++M G PI R+K K+V D Y Sbjct: 207 DIIMENGARIPISRNKYKKVVDKY 230 >A7VDK0.1 A7VDK0_9CLOT Putative uncharacterized protein Length = 243 Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 37/146 (25%), Positives = 73/146 (50%), Gaps = 2/146 (1%) Query: 2 ESFDVMTFQYLIKPIAPQIFEEKVIKLCQYFQALEKKFMIIKSAYEEVVLKYDDIIAIEA 61 ESF+V FQ+L KP++ E+ + + + +Q ++I + EE ++ ++++ I+A Sbjct: 96 ESFEVQPFQFLTKPVSYVRIEKLLSDIIRRYQHSHITKIVIDTNGEEHLIPVNNLLYIQA 155 Query: 62 AKSLTIKNKLNFITLNQLYESKGILAEYALALKDNHFLQIHRSVIINLLHVRKFSSGVVL 121 K K L + + + +G + E+ L + F +R +IN+ H++ VL Sbjct: 156 VKGE--KRYLEYHLTDAILYGEGTIQEWENRLATHSFYSTYRGYLINIGHIQIIQQTHVL 213 Query: 122 MTGGMEFPIGRSKLKEVKDYYTKFMI 147 M G + PI R K+ ++ Y +I Sbjct: 214 MDNGEQLPISRRKISPLQQLYADRII 239 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.325 0.141 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 812,003,586 Number of extensions: 28073167 Number of successful extensions: 96461 Number of sequences better than 1.0e-05: 79 Number of HSP's gapped: 96765 Number of HSP's successfully gapped: 79 Length of query: 155 Length of database: 3,060,696,203 Length adjustment: 116 Effective length of query: 39 Effective length of database: 1,967,858,463 Effective search space: 76746480057 Effective search space used: 76746480057 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 126 (53.1 bits)