BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0579.0048.p
         (98 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B0S3I8.1 B0S3I8_FINM2 Two-component response regulator                 67   6e-10
A7VDK0.1 A7VDK0_9CLOT Putative uncharacterized protein                 66   8e-10
A9NE52.1 A9NE52_ACHLI Two-component system response regulator, L...    63   9e-09
B7XZI2.1 B7XZI2_RUMHA Putative uncharacterized protein                 61   4e-08
Q17ZZ9.1 Q17ZZ9_CLOD6 Two-component response regulator                 60   5e-08

>B0S3I8.1 B0S3I8_FINM2 Two-component response regulator
          Length = 231

 Score = 66.6 bits (161), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 39/91 (42%), Positives = 56/91 (61%), Gaps = 2/91 (2%)

Query: 1  VAICDDEDKQRELVKGMLIALSIKANINFEMEEFNSGEQLAAHYEHNEPPFHILILDVEM 60
          +AI DDE+  R L K      +    I+ + E F+SGE    +Y+ N+    IL+LDVEM
Sbjct: 3  IAIVDDEENIRNLYKKYCEEWADINKIDLKTELFSSGENFIFNYDENDL-IDILLLDVEM 61

Query: 61 AGINGIQTAQRIRGLKHLDEQIIFLTNYPEY 91
            ING++ ++RIR  K+ D QIIF++ YPEY
Sbjct: 62 KKINGVELSKRIRE-KNSDIQIIFISGYPEY 91


>A7VDK0.1 A7VDK0_9CLOT Putative uncharacterized protein
          Length = 243

 Score = 66.2 bits (160), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 38/92 (41%), Positives = 53/92 (57%), Gaps = 4/92 (4%)

Query: 1  VAICDDEDKQRELVKGMLIALSIKANINFEMEEFNSGEQL-AAHYEHNEPPFHILILDVE 59
          + ICDD       +   +    I  NI FE+E F SGE L  A  +H   PF IL+LD+E
Sbjct: 5  LGICDDTQLDIACLTEHIKHYMISYNIQFEIESFQSGEALLQAQRKH---PFQILLLDIE 61

Query: 60 MAGINGIQTAQRIRGLKHLDEQIIFLTNYPEY 91
          M GING+  A+ +R   + +  I+F+T+YPEY
Sbjct: 62 MPGINGMTIARYLRDELYDESFIVFVTSYPEY 93


>A9NE52.1 A9NE52_ACHLI Two-component system response regulator, LytT/AlgR
          family
          Length = 247

 Score = 62.8 bits (151), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 55/91 (60%), Gaps = 1/91 (1%)

Query: 1  VAICDDEDKQRELVKGMLIALSIKANINFEMEEFNSGEQLAAHYEHNEPPFHILILDVEM 60
          +AICD+E    +  +  L +++ K  I+ ++  F+SGE L  H +     F I+ LD+ M
Sbjct: 8  IAICDNEQVFLDYYQSKLESVARKLKIDLDIHRFSSGEALLFHLDDYPNQFQIIYLDIVM 67

Query: 61 AGINGIQTAQRIRGLKHLDEQIIFLTNYPEY 91
           GINGI+TA ++R L  +  +IIFLT+  +Y
Sbjct: 68 GGINGIETALKVRKLNSV-VKIIFLTSSTDY 97


>B7XZI2.1 B7XZI2_RUMHA Putative uncharacterized protein
          Length = 232

 Score = 60.8 bits (146), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 52/92 (56%), Gaps = 4/92 (4%)

Query: 1  VAICDDEDKQRELVKGMLIALSIKANINFEMEEFNSGEQLAAHYEHNEPPFHILILDVEM 60
          +AICDD     + +   +   + +ANI+  ++ F S E    HYE  +  + IL+LDVEM
Sbjct: 5  IAICDDSKIDTQYITNFVKCWAQEANISVHIDAFPSAEAFLFHYEEKK-DYDILLLDVEM 63

Query: 61 AGINGIQTAQRIRGLKHLDE-QIIFLTNYPEY 91
            +NG+  A+ +R  K  D  QI+FLT Y +Y
Sbjct: 64 GAMNGVTLAKTLR--KENDTIQIVFLTGYSDY 93


>Q17ZZ9.1 Q17ZZ9_CLOD6 Two-component response regulator
          Length = 236

 Score = 60.5 bits (145), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/93 (38%), Positives = 53/93 (56%), Gaps = 8/93 (8%)

Query: 1  VAICDDEDKQRELVKGMLIALSIKANINFEMEEFNSGEQLAAHYEHNEPPFHILILDVEM 60
          V ICDDE  QR ++K     L  +  +N+++ EF+ GE L + Y        I+ LD++M
Sbjct: 4  VVICDDEKIQRSILKEFTEKLLSERCLNYQILEFSCGEDLISKYPE---KIDIIFLDIQM 60

Query: 61 AGINGIQTAQRIRGLKHLDEQ--IIFLTNYPEY 91
            INGI+ A++IR     DE+  IIF T + EY
Sbjct: 61 KDINGIEVAKKIR---KFDEKVEIIFTTAFSEY 90


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.320    0.139    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 538,721,988
Number of extensions: 17854085
Number of successful extensions: 54584
Number of sequences better than 1.0e-05: 54
Number of HSP's gapped: 54746
Number of HSP's successfully gapped: 54
Length of query: 98
Length of database: 3,060,696,203
Length adjustment: 67
Effective length of query: 31
Effective length of database: 2,429,488,198
Effective search space: 75314134138
Effective search space used: 75314134138
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 125 (52.8 bits)