BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0579.0045.p (320 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DGR9.1 B1DGR9_9BACL Transcriptional regulator, MarR family 494 e-138 B1DDC3.1 B1DDC3_9BACL Transcriptional regulator, ArsR family 358 4e-97 Q9KBQ6.1 Q9KBQ6_BACHD BH1869 protein 328 4e-88 Q5WL11.1 Q5WL11_BACSK Transcriptional regulator 327 1e-87 B8I0K3.1 B8I0K3_CLOCE Transcriptional regulator, ArsR family 318 4e-85 >B1DGR9.1 B1DGR9_9BACL Transcriptional regulator, MarR family Length = 303 Score = 494 bits (1272), Expect = e-138, Method: Compositional matrix adjust. Identities = 228/302 (75%), Positives = 264/302 (87%) Query: 13 MIKANGDPKFLLLYEALASEVRWRIMGFIADREINVKDIAAKLDLSPSIVTMHIRKLEQA 72 MI+ANGD +FL LYEALASEVRWRIM +A++E+N KDIA ++ LSPSI+TMHIRKLEQA Sbjct: 1 MIRANGDKQFLPLYEALASEVRWRIMELLAEKEMNTKDIAGRMQLSPSIITMHIRKLEQA 60 Query: 73 GLIGCRRVRINGGTHKLCFLKQKNIEIELPSANHSTRIKEQTISVGHYTAFEVHPTCGLG 132 GLIG RRVR NGGTHKLCFL +++I I+LP A+ +EQ+I VGHYTAFEVHPTCGLG Sbjct: 61 GLIGSRRVRRNGGTHKLCFLTERHIGIDLPFASKPREFREQSIPVGHYTAFEVHPTCGLG 120 Query: 133 TLEKEIGIWDDPRYFLDPERVHAAILWFGRGYVEYKTPNYLLPDQTPEAIEISMELASEA 192 T E EIG+WDDPRYFLDPERV+A+ILWFG+GYVEYKTPNYL P+Q+ +EISME+ASEA Sbjct: 121 TREMEIGVWDDPRYFLDPERVNASILWFGKGYVEYKTPNYLQPEQSVSVLEISMEIASEA 180 Query: 193 PGLRDHWPSDIQFTFNGVRLGTWTSPADFGRAARGKYTPEWWHRNVNQYGLLKTIRIDAQ 252 PGL DHWPSDI F FNG+ LGTWTSPADFGRAARGKYTP+WWHRNVNQYGL KTIR+D + Sbjct: 181 PGLSDHWPSDIAFAFNGIDLGTWTSPADFGRAARGKYTPDWWHRNVNQYGLWKTIRVDTK 240 Query: 253 GTFMDGERMSDVKVEDIKLKEQFWTLRFTVDENSVNIGGLTLYGAGFGNHDQDIVIRMYL 312 GTFMD E+MSDV V D++L E FWTLRFTVDE+S ++GGLTLYGAGFGNHD+DIVIR+Y Sbjct: 241 GTFMDNEQMSDVTVADLRLAEPFWTLRFTVDEDSPHVGGLTLYGAGFGNHDKDIVIRVYP 300 Query: 313 GD 314 D Sbjct: 301 ED 302 >B1DDC3.1 B1DDC3_9BACL Transcriptional regulator, ArsR family Length = 305 Score = 358 bits (919), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 168/306 (54%), Positives = 223/306 (72%), Gaps = 4/306 (1%) Query: 12 LMIKANGDPKFLLLYEALASEVRWRIMGFIA--DREINVKDIAAKLDLSPSIVTMHIRKL 69 ++IK + D +L LYEALAS VR I+ +A +NVKD+AA L LS +IVTMH+RKL Sbjct: 1 MLIKTDTDHAWLPLYEALASPVRLNILDLLAAASEPMNVKDLAAALGLSSAIVTMHVRKL 60 Query: 70 EQAGLIGCRRVRINGGTHKLCFLKQKNIEIELPSANH-STRIKEQTISVGHYTAFEVHPT 128 EQAG+I + VR GGTHK+C + I+I+LP A + E +I +GHYT FEVHPT Sbjct: 61 EQAGIIQTKMVRKQGGTHKICEIAASRIQIDLPQAGFIPKKTHEISIPIGHYTEFEVHPT 120 Query: 129 CGLGTLEKEIGIWDDPRYFLDPERVHAAILWFGRGYVEYKTPNYLLPDQTPEAIEISMEL 188 CG+ T EK IG +DD RYFL+PER++A ILWFG+GYVEY+ PNYLLP Q PE +EI +E+ Sbjct: 121 CGIATTEKVIGQFDDARYFLEPERMNAGILWFGQGYVEYRIPNYLLPGQRPEELEIVLEI 180 Query: 189 ASEAPGLRDHWPSDIQFTFNGVRLGTWTSPADFGRAARGKYTPEWWHRNVNQYGLLKTIR 248 +SEAPG ++WPSDI FT NGVR+G WTSP D+G A +GKYTP WW VNQYGLLK IR Sbjct: 181 SSEAPGYNENWPSDIVFTLNGVRIGMWTSPGDYG-AIKGKYTPSWWQDFVNQYGLLKIIR 239 Query: 249 IDAQGTFMDGERMSDVKVEDIKLKEQFWTLRFTVDENSVNIGGLTLYGAGFGNHDQDIVI 308 + GTF+DG+++SD ++ I L W R V++N+ ++GGLTL+G GFGN++QD++ Sbjct: 240 VQKNGTFIDGQQISDTGIDQIGLNRNQWVFRLAVEDNAAHVGGLTLFGKGFGNYNQDMIF 299 Query: 309 RMYLGD 314 R++ + Sbjct: 300 RVHYSE 305 >Q9KBQ6.1 Q9KBQ6_BACHD BH1869 protein Length = 313 Score = 328 bits (841), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 151/290 (52%), Positives = 211/290 (72%), Gaps = 2/290 (0%) Query: 23 LLLYEALASEVRWRIMGFIADREINVKDIAAKLDLSPSIVTMHIRKLEQAGLIGCRRVRI 82 L +YEALAS+VR I+ + + +N++++A + LS +I+TMHI+KLE+AG+I V Sbjct: 10 LPVYEALASKVRLAIIQQLTRKSMNIRELAEAVGLSSAIMTMHIKKLEKAGIIRTEMVPG 69 Query: 83 NGGTHKLCFLKQKNIEIELPSANHSTRIKEQTI-SVGHYTAFEVHPTCGLGTLEKEIGIW 141 G KLC L +IEI P S ++ QTI SVGHYT F V PTCGL T EK IG + Sbjct: 70 KAGIQKLCILDTDHIEINFPPKKESLKLYHQTILSVGHYTDFLVEPTCGLATAEKIIGEF 129 Query: 142 DDPRYFLDPERVHAAILWFGRGYVEYKTPNYLLPDQTPEAIEISMELASEAPGLRDHWPS 201 D+PRYFLDPERV+A ILWF +GY+EYK PN+L + P+ +EIS+EL+SEAP D+WPS Sbjct: 130 DEPRYFLDPERVNAKILWFSKGYIEYKIPNFLHHSENPKELEISLELSSEAPFTNDNWPS 189 Query: 202 DIQFTFNGVRLGTWTSPADFGRAARGKYTPEWWHRNVNQYGLLKTIRIDAQGTFMDGERM 261 DI F FN V++G WTSP DFG + GKYTP+WW + +NQYGLLK IRI +GTF++G ++ Sbjct: 190 DISFYFNNVKIGIWTSPGDFGDSP-GKYTPDWWPKVINQYGLLKFIRITKEGTFIEGAKI 248 Query: 262 SDVKVEDIKLKEQFWTLRFTVDENSVNIGGLTLYGAGFGNHDQDIVIRMY 311 SDV ++D+ ++ + W+ R V +++ N+GG+T++G GFGN++QDI+ R+Y Sbjct: 249 SDVTIDDVHIRSKQWSFRVAVPDDAENVGGVTIFGEGFGNYNQDIIFRLY 298 >Q5WL11.1 Q5WL11_BACSK Transcriptional regulator Length = 303 Score = 327 bits (837), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 154/291 (52%), Positives = 209/291 (71%), Gaps = 3/291 (1%) Query: 23 LLLYEALASEVRWRIMGFIADREINVKDIAAKLDLSPSIVTMHIRKLEQAGLIGCRRVRI 82 L +YEALAS +R ++ +A+R +N+K++A +S +I+T H++KLE+AGLI VR Sbjct: 12 LPVYEALASRIRLNVLQLLAERSMNIKELAESQQVSSAIMTKHVQKLEKAGLIDTTHVRG 71 Query: 83 NGGTHKLCFLKQKNIEIELPSA-NHSTR-IKEQTISVGHYTAFEVHPTCGLGTLEKEIGI 140 G K+C L+ ++ +I P+ N TR E +SVGH+T F V PTCGL T E +G Sbjct: 72 KAGVQKMCSLRVRHAQIAFPNKENGPTRAFHESHVSVGHFTDFYVEPTCGLATPETIVGE 131 Query: 141 WDDPRYFLDPERVHAAILWFGRGYVEYKTPNYLLPDQTPEAIEISMELASEAPGLRDHWP 200 +D+PRYFLDP RV+A ILWF +G+VEYK N++ +TP+ +EISMEL+SEAP D+WP Sbjct: 132 FDEPRYFLDPMRVNARILWFYKGFVEYKLSNFIHGGETPKELEISMELSSEAPFTNDNWP 191 Query: 201 SDIQFTFNGVRLGTWTSPADFGRAARGKYTPEWWHRNVNQYGLLKTIRIDAQGTFMDGER 260 SD+ FTFNGV LG W SP DFG +GKYTP WW R +NQYGLLK IRI GTF+DG++ Sbjct: 192 SDVSFTFNGVSLGYWRSPGDFGD-QKGKYTPAWWPRGINQYGLLKVIRITEAGTFIDGKQ 250 Query: 261 MSDVKVEDIKLKEQFWTLRFTVDENSVNIGGLTLYGAGFGNHDQDIVIRMY 311 +SDVK+ D+ ++E+ WT R V E V+IGG+TL+G+ FGN+DQDIV R+Y Sbjct: 251 LSDVKLADVSIREKVWTFRVAVGEEGVHIGGVTLFGSSFGNYDQDIVFRLY 301 >B8I0K3.1 B8I0K3_CLOCE Transcriptional regulator, ArsR family Length = 300 Score = 318 bits (815), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 146/299 (48%), Positives = 205/299 (68%), Gaps = 2/299 (0%) Query: 14 IKANGDPKFLLLYEALASEVRWRIMGFIADREINVKDIAAKLDLSPSIVTMHIRKLEQAG 73 +K + K+L +YEAL+S VR +I+ +A +N+K IA +L LS +IVTMH++KLE AG Sbjct: 1 MKTDISEKWLPVYEALSSRVRIKIINILAQNSLNIKQIAEELGLSSAIVTMHVKKLEAAG 60 Query: 74 LIGCRRVRINGGTHKLCFLKQKNIEIELPSANHSTR-IKEQTISVGHYTAFEVHPTCGLG 132 ++ R I G K+CFL ++EI+ PS R E ++ +GHY+ F V PTCG+ Sbjct: 61 IVHSERKSIKGAVQKICFLDVDSLEIQFPSRKAKVRSYHEFSMPIGHYSDFSVTPTCGIA 120 Query: 133 TLEKEIGIWDDPRYFLDPERVHAAILWFGRGYVEYKTPNYLLPDQTPEAIEISMELASEA 192 T EK IG +DDPRYFLDP+RV+A ILWF G+VEY+ PN+LL Q PE +EISMEL SEA Sbjct: 121 TPEKVIGQFDDPRYFLDPDRVNAGILWFTEGFVEYRIPNFLLSVQQPEELEISMELGSEA 180 Query: 193 PGLRDHWPSDIQFTFNGVRLGTWTSPADFGRAARGKYTPEWWHRNVNQYGLLKTIRIDAQ 252 PG+ +WPSDI F N +G WTSP D+G +RGKYTP WW V QYGL K IRI Sbjct: 181 PGINSNWPSDISFFLNERIIGQWTSPGDYGN-SRGKYTPRWWSLQVGQYGLYKAIRIAQD 239 Query: 253 GTFMDGERMSDVKVEDIKLKEQFWTLRFTVDENSVNIGGLTLYGAGFGNHDQDIVIRMY 311 G+++DG ++SD + + +++++W+ R V S N+GG+T++G GFGN+ +DI+ ++Y Sbjct: 240 GSYIDGIKVSDTTLSSLDIRQKYWSFRIAVLPESQNVGGVTIFGKGFGNYSRDIMFKLY 298 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.139 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,049,675,661 Number of extensions: 88817302 Number of successful extensions: 183650 Number of sequences better than 1.0e-05: 48 Number of HSP's gapped: 183527 Number of HSP's successfully gapped: 48 Length of query: 320 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 185 Effective length of database: 1,788,859,178 Effective search space: 330938947930 Effective search space used: 330938947930 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)