BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0579.0043.p
         (37 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KDE4.1 B3KDE4_9BACI Helix-turn-helix type 11 domain protein          67   7e-10
C2XWN5.1 C2XWN5_BACCE Transcriptional regulator, DeoR                  66   1e-09
C2PYJ1.1 C2PYJ1_BACCE Transcriptional regulator, DeoR                  65   2e-09
A9VMP8.1 A9VMP8_BACWK Helix-turn-helix type 11 domain protein          65   2e-09
C2SMV6.1 C2SMV6_BACCE Transcriptional regulator, DeoR                  65   2e-09

>B3KDE4.1 B3KDE4_9BACI Helix-turn-helix type 11 domain protein
          Length = 320

 Score = 66.6 bits (161), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 27/37 (72%), Positives = 34/37 (91%)

Query: 1   VAEITNWLLFLGGDIRVREVPEEILEGLQERIRLYCP 37
           + EITNWLLFLGGDI+VRE+PE+++EGL+ER  LYCP
Sbjct: 284 LTEITNWLLFLGGDIKVREIPEQVVEGLKERFSLYCP 320


>C2XWN5.1 C2XWN5_BACCE Transcriptional regulator, DeoR
          Length = 320

 Score = 65.9 bits (159), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/37 (75%), Positives = 34/37 (91%)

Query: 1   VAEITNWLLFLGGDIRVREVPEEILEGLQERIRLYCP 37
           + EITNWLLFLG DI++REVPEE+LEGL+ER+ LYCP
Sbjct: 284 LTEITNWLLFLGKDIKIREVPEEVLEGLKERLCLYCP 320


>C2PYJ1.1 C2PYJ1_BACCE Transcriptional regulator, DeoR
          Length = 320

 Score = 65.1 bits (157), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/37 (75%), Positives = 34/37 (91%)

Query: 1   VAEITNWLLFLGGDIRVREVPEEILEGLQERIRLYCP 37
           + EITNWLLFLG DI++REVPEE+LEGL+ER+ LYCP
Sbjct: 284 LTEITNWLLFLGKDIKIREVPEEVLEGLKERLCLYCP 320


>A9VMP8.1 A9VMP8_BACWK Helix-turn-helix type 11 domain protein
          Length = 320

 Score = 65.1 bits (157), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/35 (80%), Positives = 33/35 (94%)

Query: 3   EITNWLLFLGGDIRVREVPEEILEGLQERIRLYCP 37
           EITNWLLFLG DI++REVPEE+LEGL+ER+ LYCP
Sbjct: 286 EITNWLLFLGKDIKIREVPEEVLEGLKERLCLYCP 320


>C2SMV6.1 C2SMV6_BACCE Transcriptional regulator, DeoR
          Length = 320

 Score = 65.1 bits (157), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/35 (80%), Positives = 33/35 (94%)

Query: 3   EITNWLLFLGGDIRVREVPEEILEGLQERIRLYCP 37
           EITNWLLFLG DI++REVPEE+LEGL+ER+ LYCP
Sbjct: 286 EITNWLLFLGKDIKIREVPEEVLEGLKERLCLYCP 320


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.325    0.149    0.463 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 224,341,553
Number of extensions: 4555316
Number of successful extensions: 12058
Number of sequences better than 1.0e-05: 59
Number of HSP's gapped: 12058
Number of HSP's successfully gapped: 59
Length of query: 37
Length of database: 3,060,696,203
Length adjustment: 11
Effective length of query: 26
Effective length of database: 2,957,065,038
Effective search space: 76883690988
Effective search space used: 76883690988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 126 (53.1 bits)