BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0579.0042.p (284 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C2PYJ1.1 C2PYJ1_BACCE Transcriptional regulator, DeoR 377 e-103 C3A8J8.1 C3A8J8_BACMY Transcriptional regulator, DeoR 377 e-103 C2QEJ7.1 C2QEJ7_BACCE Transcriptional regulator, DeoR 365 4e-99 Q81AW7.1 Q81AW7_BACCR Transcriptional regulator, DeoR family 363 7e-99 C2T3P2.1 C2T3P2_BACCE Transcriptional regulator, DeoR 363 7e-99 >C2PYJ1.1 C2PYJ1_BACCE Transcriptional regulator, DeoR Length = 320 Score = 377 bits (969), Expect = e-103, Method: Compositional matrix adjust. Identities = 192/259 (74%), Positives = 213/259 (82%) Query: 3 MKKVERINVIMRYINNRAHFTISEIMQEFNISRSTAIRDIREIEALGMPLDAEVGRDGGY 62 MKKVERIN IMRYINNR+HFTISEI++EFNISRSTAIRDIREIEA+GMPL AEVGRDGGY Sbjct: 1 MKKVERINTIMRYINNRSHFTISEIIREFNISRSTAIRDIREIEAMGMPLVAEVGRDGGY 60 Query: 63 FVMRNSVLPEVRFTGNEVKALFIAFMATRNQQLPYLKSRQSLAEKLLGLISENQQDDLFH 122 FVM NS+LP VRFT NEVKALFIAFMATRNQQLPYLKSRQSLAEKLLGLISE QQDDL Sbjct: 61 FVMHNSILPVVRFTDNEVKALFIAFMATRNQQLPYLKSRQSLAEKLLGLISEIQQDDLVL 120 Query: 123 LNQILLFEGTXXXXXXXXXXXXXXHPMLEQLIQILLMDSYLLXXXXXXXXXXXXXXYLLH 182 LNQILLFEGT HPMLE+LIQILL+DS+LL YLLH Sbjct: 121 LNQILLFEGTNPHNPDLLELSDLPHPMLEKLIQILLLDSHLLITVKEEEETKSYPIYLLH 180 Query: 183 LYREKSLWLIEGFDLQEEKKQIYPVDDLTNVIPYPSKKRLSKKKIQEKLSKQEEVINLIL 242 LY+EKS W+IEGFD++EEKK++ PVD L N+ PY +K RLSKKKI EKLSK++E INL+L Sbjct: 181 LYQEKSHWIIEGFDIKEEKKKMLPVDHLINLEPYTTKNRLSKKKILEKLSKKDEAINLVL 240 Query: 243 ELGPEAIAQFKKYHPIHVS 261 ELGP+AIAQFKKYHPI +S Sbjct: 241 ELGPKAIAQFKKYHPIKIS 259 >C3A8J8.1 C3A8J8_BACMY Transcriptional regulator, DeoR Length = 320 Score = 377 bits (969), Expect = e-103, Method: Compositional matrix adjust. Identities = 193/259 (74%), Positives = 212/259 (81%) Query: 3 MKKVERINVIMRYINNRAHFTISEIMQEFNISRSTAIRDIREIEALGMPLDAEVGRDGGY 62 MKKVERIN IMRYINNR+HFTISEI++EFNISRSTAIRDIREIEA+GMPL AEVGRDGGY Sbjct: 1 MKKVERINTIMRYINNRSHFTISEIIREFNISRSTAIRDIREIEAMGMPLVAEVGRDGGY 60 Query: 63 FVMRNSVLPEVRFTGNEVKALFIAFMATRNQQLPYLKSRQSLAEKLLGLISENQQDDLFH 122 FVM NS+LP VRFT NEVKALFIAFMATRNQQLPYLKSRQSLAEKLLGLISE QQDDL Sbjct: 61 FVMHNSILPVVRFTDNEVKALFIAFMATRNQQLPYLKSRQSLAEKLLGLISEIQQDDLVL 120 Query: 123 LNQILLFEGTXXXXXXXXXXXXXXHPMLEQLIQILLMDSYLLXXXXXXXXXXXXXXYLLH 182 LNQILLFEGT HPMLE+LIQILL+DS+LL YLLH Sbjct: 121 LNQILLFEGTNPHNPDLLELSDLPHPMLEKLIQILLLDSHLLITVKEEEEIKSYPIYLLH 180 Query: 183 LYREKSLWLIEGFDLQEEKKQIYPVDDLTNVIPYPSKKRLSKKKIQEKLSKQEEVINLIL 242 LY+EKS W+IE FD++EEKK++ PVD L NV PY +KKRLSKKKI EKLSK++E INL+L Sbjct: 181 LYQEKSHWIIEAFDIKEEKKKMLPVDHLINVEPYTTKKRLSKKKILEKLSKKDEAINLVL 240 Query: 243 ELGPEAIAQFKKYHPIHVS 261 ELGP+AIAQFKKYHPI S Sbjct: 241 ELGPKAIAQFKKYHPIKFS 259 >C2QEJ7.1 C2QEJ7_BACCE Transcriptional regulator, DeoR Length = 320 Score = 365 bits (936), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 192/259 (74%), Positives = 211/259 (81%) Query: 3 MKKVERINVIMRYINNRAHFTISEIMQEFNISRSTAIRDIREIEALGMPLDAEVGRDGGY 62 MKKVERIN IMRYINNR+HFTISEI+QEFNISRSTA+RDIREIEA+GMPL AEVGR GGY Sbjct: 1 MKKVERINTIMRYINNRSHFTISEIIQEFNISRSTAVRDIREIEAMGMPLVAEVGRAGGY 60 Query: 63 FVMRNSVLPEVRFTGNEVKALFIAFMATRNQQLPYLKSRQSLAEKLLGLISENQQDDLFH 122 VM NS+LP VRFT NEVKALFIAFMATRNQQLPYLKSRQSLAEKLLGLISE QQDDL Sbjct: 61 SVMHNSILPVVRFTDNEVKALFIAFMATRNQQLPYLKSRQSLAEKLLGLISETQQDDLVL 120 Query: 123 LNQILLFEGTXXXXXXXXXXXXXXHPMLEQLIQILLMDSYLLXXXXXXXXXXXXXXYLLH 182 LNQ+LLFEGT HPMLE+LIQILL D +LL YLLH Sbjct: 121 LNQLLLFEGTNPHNPDLLELSDLPHPMLEKLIQILLSDRHLLITIKEEEKIKSYPIYLLH 180 Query: 183 LYREKSLWLIEGFDLQEEKKQIYPVDDLTNVIPYPSKKRLSKKKIQEKLSKQEEVINLIL 242 LY+EKS W+IEGFDL+EEKK I+PVDDL N+ PY +KKRLSKKKI EKLSK++E+INL+L Sbjct: 181 LYQEKSHWIIEGFDLKEEKKLIFPVDDLINIEPYTTKKRLSKKKILEKLSKKDEIINLVL 240 Query: 243 ELGPEAIAQFKKYHPIHVS 261 ELGP+AIAQFKKYHP VS Sbjct: 241 ELGPKAIAQFKKYHPFKVS 259 >Q81AW7.1 Q81AW7_BACCR Transcriptional regulator, DeoR family Length = 320 Score = 363 bits (933), Expect = 7e-99, Method: Compositional matrix adjust. Identities = 188/259 (72%), Positives = 214/259 (82%) Query: 3 MKKVERINVIMRYINNRAHFTISEIMQEFNISRSTAIRDIREIEALGMPLDAEVGRDGGY 62 MKKVERIN IMRYINNR+HFTISEI+QEFNISRSTAIRDIREIEA+GMPL AEVGR GGY Sbjct: 1 MKKVERINTIMRYINNRSHFTISEIIQEFNISRSTAIRDIREIEAMGMPLVAEVGRTGGY 60 Query: 63 FVMRNSVLPEVRFTGNEVKALFIAFMATRNQQLPYLKSRQSLAEKLLGLISENQQDDLFH 122 FVM NS+LP VRFT NEVKALFIAFMATRNQQLPYLKSRQSLAEKLLGLISE QQDDL Sbjct: 61 FVMHNSILPVVRFTDNEVKALFIAFMATRNQQLPYLKSRQSLAEKLLGLISETQQDDLVL 120 Query: 123 LNQILLFEGTXXXXXXXXXXXXXXHPMLEQLIQILLMDSYLLXXXXXXXXXXXXXXYLLH 182 LNQ+LLF+GT HPMLE+LIQILL+D++LL YLLH Sbjct: 121 LNQLLLFQGTNPHNPDLLELSDLPHPMLEKLIQILLLDNHLLITMKEDEEIKTYPIYLLH 180 Query: 183 LYREKSLWLIEGFDLQEEKKQIYPVDDLTNVIPYPSKKRLSKKKIQEKLSKQEEVINLIL 242 LY+EKS W+IEGFDL++EKK ++PVDDL N+ PY + KRL+KKKI EKLSK++E+INL+L Sbjct: 181 LYQEKSHWIIEGFDLKKEKKMMFPVDDLINIEPYTTNKRLNKKKILEKLSKKDEIINLVL 240 Query: 243 ELGPEAIAQFKKYHPIHVS 261 ELGP+AIAQFKKYHP+ +S Sbjct: 241 ELGPKAIAQFKKYHPLKIS 259 >C2T3P2.1 C2T3P2_BACCE Transcriptional regulator, DeoR Length = 320 Score = 363 bits (933), Expect = 7e-99, Method: Compositional matrix adjust. Identities = 188/259 (72%), Positives = 214/259 (82%) Query: 3 MKKVERINVIMRYINNRAHFTISEIMQEFNISRSTAIRDIREIEALGMPLDAEVGRDGGY 62 MKKVERIN IMRYINNR+HFTISEI+QEFNISRSTAIRDIREIEA+GMPL AEVGR GGY Sbjct: 1 MKKVERINTIMRYINNRSHFTISEIIQEFNISRSTAIRDIREIEAMGMPLVAEVGRTGGY 60 Query: 63 FVMRNSVLPEVRFTGNEVKALFIAFMATRNQQLPYLKSRQSLAEKLLGLISENQQDDLFH 122 FVM NS+LP VRFT NEVKALFIAFMATRNQQLPYLKSRQSLAEKLLGLISE QQDDL Sbjct: 61 FVMHNSILPVVRFTDNEVKALFIAFMATRNQQLPYLKSRQSLAEKLLGLISETQQDDLVL 120 Query: 123 LNQILLFEGTXXXXXXXXXXXXXXHPMLEQLIQILLMDSYLLXXXXXXXXXXXXXXYLLH 182 LNQ+LLF+GT HPMLE+LIQILL+D++LL YLLH Sbjct: 121 LNQLLLFQGTNPHNPDLLELSDLPHPMLEKLIQILLLDNHLLITMKEDEEIKTYPIYLLH 180 Query: 183 LYREKSLWLIEGFDLQEEKKQIYPVDDLTNVIPYPSKKRLSKKKIQEKLSKQEEVINLIL 242 LY+EKS W+IEGFDL++EKK ++PVDDL N+ PY + KRL+KKKI EKLSK++E+INL+L Sbjct: 181 LYQEKSHWIIEGFDLKKEKKMMFPVDDLINIEPYTTNKRLNKKKILEKLSKKDEIINLVL 240 Query: 243 ELGPEAIAQFKKYHPIHVS 261 ELGP+AIAQFKKYHP+ +S Sbjct: 241 ELGPKAIAQFKKYHPLKIS 259 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.138 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,362,682,576 Number of extensions: 48931853 Number of successful extensions: 134020 Number of sequences better than 1.0e-05: 268 Number of HSP's gapped: 134176 Number of HSP's successfully gapped: 268 Length of query: 284 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 150 Effective length of database: 1,798,280,193 Effective search space: 269742028950 Effective search space used: 269742028950 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)