BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0579.0041.p (179 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q734G2.1 Q734G2_BACC1 Conserved domain protein 253 4e-66 C3FMV5.1 C3FMV5_BACTB Putative uncharacterized protein 252 8e-66 C3D4G0.1 C3D4G0_BACTU Putative uncharacterized protein 252 8e-66 C3CLD5.1 C3CLD5_BACTU Putative uncharacterized protein 252 8e-66 B7JGB2.1 B7JGB2_BACC0 Conserved domain protein 251 2e-65 >Q734G2.1 Q734G2_BACC1 Conserved domain protein Length = 159 Score = 253 bits (646), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 116/155 (74%), Positives = 139/155 (89%) Query: 25 TLEQKDSFTVIGLGTELKSDYTDFVGINKEKTDFWQNVSQDGRLEHLKSISTNDYVFAVS 84 T+E+KDSF V+G+GTE+KSDYTDFVGINKEK DFW V +DGRL+ LK+++TN+Y+F+VS Sbjct: 5 TIEEKDSFIVLGIGTEIKSDYTDFVGINKEKEDFWSAVKEDGRLDTLKALATNEYIFSVS 64 Query: 85 EAVNGKMMYYAGVMTEAAAPEEARVIHFPKGEYLVVKGEAQTADELNNRLAGVAFGQALG 144 EAVN KMMYYAGVMTEA EE+RVI FPKGEYLVVKGE +TA+EL+N+L G+AFGQAL Sbjct: 65 EAVNNKMMYYAGVMTEAQIEEESRVIQFPKGEYLVVKGEDKTAEELSNKLTGIAFGQALP 124 Query: 145 EAKNVAYVGGPNTTVEMGHRNGMVYGEMWIPVVRK 179 +AK+ AYVGGPNTTVEMG RNG+V+GEMWIPVVRK Sbjct: 125 DAKDFAYVGGPNTTVEMGKRNGLVFGEMWIPVVRK 159 >C3FMV5.1 C3FMV5_BACTB Putative uncharacterized protein Length = 159 Score = 252 bits (644), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 115/155 (74%), Positives = 138/155 (89%) Query: 25 TLEQKDSFTVIGLGTELKSDYTDFVGINKEKTDFWQNVSQDGRLEHLKSISTNDYVFAVS 84 T+E+KDSF V+G+GTE+KS+YTDF GINKEK DFW V +DGRL+ LK+++TN+Y+F+VS Sbjct: 5 TIEEKDSFIVLGIGTEIKSEYTDFAGINKEKEDFWSAVKEDGRLDTLKALATNEYIFSVS 64 Query: 85 EAVNGKMMYYAGVMTEAAAPEEARVIHFPKGEYLVVKGEAQTADELNNRLAGVAFGQALG 144 EAVN KMMYYAGVMTEA EE+RVI FP+GEYLVVKGE QTA+EL+N+L G+AFGQAL Sbjct: 65 EAVNNKMMYYAGVMTEAQIEEESRVIQFPRGEYLVVKGEDQTAEELSNKLTGIAFGQALP 124 Query: 145 EAKNVAYVGGPNTTVEMGHRNGMVYGEMWIPVVRK 179 EAK+ AYVGGPNTTVEMG RNG+V+GEMWIPVVRK Sbjct: 125 EAKDFAYVGGPNTTVEMGQRNGLVFGEMWIPVVRK 159 >C3D4G0.1 C3D4G0_BACTU Putative uncharacterized protein Length = 159 Score = 252 bits (644), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 115/155 (74%), Positives = 138/155 (89%) Query: 25 TLEQKDSFTVIGLGTELKSDYTDFVGINKEKTDFWQNVSQDGRLEHLKSISTNDYVFAVS 84 T+E+KDSF V+G+GTE+KS+YTDF GINKEK DFW V +DGRL+ LK+++TN+Y+F+VS Sbjct: 5 TIEEKDSFIVLGIGTEIKSEYTDFAGINKEKEDFWSAVKEDGRLDTLKALATNEYIFSVS 64 Query: 85 EAVNGKMMYYAGVMTEAAAPEEARVIHFPKGEYLVVKGEAQTADELNNRLAGVAFGQALG 144 EAVN KMMYYAGVMTEA EE+RVI FP+GEYLVVKGE QTA+EL+N+L G+AFGQAL Sbjct: 65 EAVNNKMMYYAGVMTEAQIEEESRVIQFPRGEYLVVKGEDQTAEELSNKLTGIAFGQALP 124 Query: 145 EAKNVAYVGGPNTTVEMGHRNGMVYGEMWIPVVRK 179 EAK+ AYVGGPNTTVEMG RNG+V+GEMWIPVVRK Sbjct: 125 EAKDFAYVGGPNTTVEMGQRNGLVFGEMWIPVVRK 159 >C3CLD5.1 C3CLD5_BACTU Putative uncharacterized protein Length = 159 Score = 252 bits (644), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 115/155 (74%), Positives = 138/155 (89%) Query: 25 TLEQKDSFTVIGLGTELKSDYTDFVGINKEKTDFWQNVSQDGRLEHLKSISTNDYVFAVS 84 T+E+KDSF V+G+GTE+KS+YTDF GINKEK DFW V +DGRL+ LK+++TN+Y+F+VS Sbjct: 5 TIEEKDSFIVLGIGTEIKSEYTDFAGINKEKEDFWSAVKEDGRLDTLKALATNEYIFSVS 64 Query: 85 EAVNGKMMYYAGVMTEAAAPEEARVIHFPKGEYLVVKGEAQTADELNNRLAGVAFGQALG 144 EAVN KMMYYAGVMTEA EE+RVI FP+GEYLVVKGE QTA+EL+N+L G+AFGQAL Sbjct: 65 EAVNNKMMYYAGVMTEAQIEEESRVIQFPRGEYLVVKGEDQTAEELSNKLTGIAFGQALP 124 Query: 145 EAKNVAYVGGPNTTVEMGHRNGMVYGEMWIPVVRK 179 EAK+ AYVGGPNTTVEMG RNG+V+GEMWIPVVRK Sbjct: 125 EAKDFAYVGGPNTTVEMGQRNGLVFGEMWIPVVRK 159 >B7JGB2.1 B7JGB2_BACC0 Conserved domain protein Length = 159 Score = 251 bits (642), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 115/155 (74%), Positives = 137/155 (88%) Query: 25 TLEQKDSFTVIGLGTELKSDYTDFVGINKEKTDFWQNVSQDGRLEHLKSISTNDYVFAVS 84 T+E+KDSF V+G+GTE+KS+YTDFVGI KEK DFW V +DGRL+ LK+++TNDY+F+VS Sbjct: 5 TIEEKDSFIVLGIGTEIKSEYTDFVGIKKEKEDFWSAVKEDGRLDTLKALATNDYIFSVS 64 Query: 85 EAVNGKMMYYAGVMTEAAAPEEARVIHFPKGEYLVVKGEAQTADELNNRLAGVAFGQALG 144 EAVN KMMYYAGVMTEA EE+RVI FPKGEYLVVKGE +TA+EL+N+L G+AFGQAL Sbjct: 65 EAVNNKMMYYAGVMTEAQIEEESRVIQFPKGEYLVVKGEDKTAEELSNKLTGIAFGQALR 124 Query: 145 EAKNVAYVGGPNTTVEMGHRNGMVYGEMWIPVVRK 179 EA + AYVGGPNTTVEMG RNG+V+GEMWIPVVRK Sbjct: 125 EATDFAYVGGPNTTVEMGQRNGLVFGEMWIPVVRK 159 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.314 0.132 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,014,177,952 Number of extensions: 39632076 Number of successful extensions: 145613 Number of sequences better than 1.0e-05: 76 Number of HSP's gapped: 145616 Number of HSP's successfully gapped: 76 Length of query: 179 Length of database: 3,060,696,203 Length adjustment: 127 Effective length of query: 52 Effective length of database: 1,864,227,298 Effective search space: 96939819496 Effective search space used: 96939819496 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 126 (53.1 bits)