BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0579.0036.p (227 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KET1.1 B3KET1_9BACI Response regulator receiver 414 e-114 A6LV35.1 A6LV35_CLOB8 Two component transcriptional regulator, w... 344 3e-93 A7GBS5.1 A7GBS5_CLOBL DNA-binding response regulator 341 3e-92 Q8ETA4.1 Q8ETA4_OCEIH Two-component response regulator 333 7e-90 Q2BCN1.1 Q2BCN1_9BACI Two-component response regulator (Fragment) 288 2e-76 >B3KET1.1 B3KET1_9BACI Response regulator receiver Length = 229 Score = 414 bits (1065), Expect = e-114, Method: Compositional matrix adjust. Identities = 201/227 (88%), Positives = 214/227 (94%) Query: 1 MNILLVEDDKTIASGLEYSLQQDGFPTVLCHDVASAKKVLTEDIDQFALCLFDLQLPDGS 60 M LLVEDDKTIASGLEYSLQQ+ + TV+CHDVASAK+VL EDIDQFALCLFDLQLPDGS Sbjct: 3 MKFLLVEDDKTIASGLEYSLQQERYSTVICHDVASAKQVLAEDIDQFALCLFDLQLPDGS 62 Query: 61 GYELCKMVKERRDIPVIFLTVIDDEVNVVMGLDMGADDYITKPFRVRELLSRIKTVLRRY 120 GYELCKMVKERRDIPVIFLTVIDDEVNVVMGLDMGADDYITKPFRVRELLSRIK+VLRRY Sbjct: 63 GYELCKMVKERRDIPVIFLTVIDDEVNVVMGLDMGADDYITKPFRVRELLSRIKSVLRRY 122 Query: 121 QKPPYTIAIIDIGNVRINTLEGKVHKNGAEISLTALEYRLLLIFGSHIGQVLTRNQLLEQ 180 QKP +I+DI ++RINTLEGKV KNGAEI+LTALEYRLLLIFG+HIGQVL+RNQLLEQ Sbjct: 123 QKPSQVNSIMDIDDIRINTLEGKVFKNGAEIALTALEYRLLLIFGNHIGQVLSRNQLLEQ 182 Query: 181 IWDVAGDFVNDNTLTVYIKRLREKLEDDPGHPVLIKTIRGLGYKAGD 227 IWDVAGDFVNDNTLTVYIKRLREKLEDDPGHP LIKT+RGLGYK GD Sbjct: 183 IWDVAGDFVNDNTLTVYIKRLREKLEDDPGHPTLIKTVRGLGYKVGD 229 >A6LV35.1 A6LV35_CLOB8 Two component transcriptional regulator, winged helix family Length = 225 Score = 344 bits (883), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 164/227 (72%), Positives = 199/227 (87%), Gaps = 2/227 (0%) Query: 1 MNILLVEDDKTIASGLEYSLQQDGFPTVLCHDVASAKKVLTEDIDQFALCLFDLQLPDGS 60 M ILLVEDDK IASGLEYSL+Q+GF T++C+D++SAK V+ ++ +F LCLFDL LPDGS Sbjct: 1 MKILLVEDDKIIASGLEYSLKQEGFDTMVCYDISSAKGVIEDN--KFNLCLFDLSLPDGS 58 Query: 61 GYELCKMVKERRDIPVIFLTVIDDEVNVVMGLDMGADDYITKPFRVRELLSRIKTVLRRY 120 GYELCK+V+E+ D PVIFLT DDEVNVVMGLD+GADDYITKPFR+REL+SRI++V+RRY Sbjct: 59 GYELCKLVREKDDTPVIFLTACDDEVNVVMGLDIGADDYITKPFRIRELISRIRSVIRRY 118 Query: 121 QKPPYTIAIIDIGNVRINTLEGKVHKNGAEISLTALEYRLLLIFGSHIGQVLTRNQLLEQ 180 K + AI+++ N+RINTL+ KV+KN AEI+LTALEYRLLLIF ++ GQVL+RNQ+LE Sbjct: 119 GKDSSSKAILELNNIRINTLDAKVYKNDAEITLTALEYRLLLIFANNPGQVLSRNQILEG 178 Query: 181 IWDVAGDFVNDNTLTVYIKRLREKLEDDPGHPVLIKTIRGLGYKAGD 227 IWDVAGDFVNDNTLTVYIKR+REKLEDDP P +IKT+RGLGYK GD Sbjct: 179 IWDVAGDFVNDNTLTVYIKRIREKLEDDPQKPTIIKTVRGLGYKVGD 225 >A7GBS5.1 A7GBS5_CLOBL DNA-binding response regulator Length = 225 Score = 341 bits (874), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 163/227 (71%), Positives = 197/227 (86%), Gaps = 2/227 (0%) Query: 1 MNILLVEDDKTIASGLEYSLQQDGFPTVLCHDVASAKKVLTEDIDQFALCLFDLQLPDGS 60 MNILLVEDDK IASG+EYSL+Q+GF T+LC+DVA+AKK L ++F LC+FDL LPDG+ Sbjct: 1 MNILLVEDDKIIASGIEYSLEQEGFTTILCYDVATAKKALK--YNKFDLCIFDLSLPDGN 58 Query: 61 GYELCKMVKERRDIPVIFLTVIDDEVNVVMGLDMGADDYITKPFRVRELLSRIKTVLRRY 120 GYELCK+V+E+ DIP+IFLT DDEVNVVMGLDMGADDYI KPFR+REL+SRIK+VLRRY Sbjct: 59 GYELCKIVREKEDIPIIFLTACDDEVNVVMGLDMGADDYIIKPFRIRELISRIKSVLRRY 118 Query: 121 QKPPYTIAIIDIGNVRINTLEGKVHKNGAEISLTALEYRLLLIFGSHIGQVLTRNQLLEQ 180 QK + I+++ ++RINTL+ KV+KN EI LTALEYRLLLI ++ GQVL+RNQLL+ Sbjct: 119 QKGINSKIILELNDIRINTLDAKVYKNDKEIVLTALEYRLLLILANNQGQVLSRNQLLQG 178 Query: 181 IWDVAGDFVNDNTLTVYIKRLREKLEDDPGHPVLIKTIRGLGYKAGD 227 IWDVAGDFVNDNTLTVYIKR+REKLE+DP PV+IKT+RG+GYK GD Sbjct: 179 IWDVAGDFVNDNTLTVYIKRIREKLENDPQKPVIIKTVRGMGYKVGD 225 >Q8ETA4.1 Q8ETA4_OCEIH Two-component response regulator Length = 256 Score = 333 bits (854), Expect = 7e-90, Method: Compositional matrix adjust. Identities = 158/231 (68%), Positives = 194/231 (83%), Gaps = 4/231 (1%) Query: 1 MNILLVEDDKTIASGLEYSLQQDGFPTVLCHDVASAKKVLTEDIDQFALCLFDLQLPDGS 60 MNIL+VEDDKTIA+GLEYSL+Q+G+ V+CH V A++ + D+D +LCLFDL LPDGS Sbjct: 20 MNILIVEDDKTIATGLEYSLKQEGYDVVVCHKVQEAQRKINNDLDDISLCLFDLSLPDGS 79 Query: 61 GYELCKMVKERRDIPVIFLTVIDDEVNVVMGLDMGADDYITKPFRVRELLSRIKTVLRRY 120 GYELC+MVK + DIPVIFLTV+DDEVNVVMGLDMGADDYITKPFR+REL+SRIKTVLRRY Sbjct: 80 GYELCEMVKRKADIPVIFLTVVDDEVNVVMGLDMGADDYITKPFRIRELISRIKTVLRRY 139 Query: 121 QKPP----YTIAIIDIGNVRINTLEGKVHKNGAEISLTALEYRLLLIFGSHIGQVLTRNQ 176 +K ++I IG++ I+TLEGKV+K EI LTALEYRLL+IF +H GQVL+R Q Sbjct: 140 EKSKPNKEQLSSVISIGSINIHTLEGKVYKETEEILLTALEYRLLMIFVNHRGQVLSRKQ 199 Query: 177 LLEQIWDVAGDFVNDNTLTVYIKRLREKLEDDPGHPVLIKTIRGLGYKAGD 227 LL+ IWD+AGDFVNDNTLTVYIKRLR+K+E+D HP +I+T+RG+GY+ D Sbjct: 200 LLQLIWDIAGDFVNDNTLTVYIKRLRKKIEEDAQHPTVIETVRGMGYRMVD 250 >Q2BCN1.1 Q2BCN1_9BACI Two-component response regulator (Fragment) Length = 198 Score = 288 bits (737), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 139/199 (69%), Positives = 167/199 (83%), Gaps = 2/199 (1%) Query: 29 LCHDVASAKKVLTEDIDQFALCLFDLQLPDGSGYELCKMVKERRDIPVIFLTVIDDEVNV 88 +CHD A A++++ +D+ LCLFDL LPDGSGY+LC +VK++ D+PVIFLT +D+EVNV Sbjct: 2 VCHDAAGARELIRTKLDEIDLCLFDLGLPDGSGYDLCSLVKKQSDLPVIFLTAMDEEVNV 61 Query: 89 VMGLDMGADDYITKPFRVRELLSRIKTVLRRYQKPPYTIAIIDIGNVRINTLEGKVHKNG 148 VMGLDMGADDYITKPFRVRELLSRI++VLRRY K + + ++T EGKV+K+G Sbjct: 62 VMGLDMGADDYITKPFRVRELLSRIRSVLRRYDKQDR--QTVTFQAITVHTGEGKVYKHG 119 Query: 149 AEISLTALEYRLLLIFGSHIGQVLTRNQLLEQIWDVAGDFVNDNTLTVYIKRLREKLEDD 208 EI LTALEYRLLLIF +H GQVLTR+QLL++IWDVAGDFVNDNTLTVYIKRLREKLEDD Sbjct: 120 EEIQLTALEYRLLLIFANHKGQVLTRSQLLDKIWDVAGDFVNDNTLTVYIKRLREKLEDD 179 Query: 209 PGHPVLIKTIRGLGYKAGD 227 P P +IKT+RGLGYKAGD Sbjct: 180 PQKPSIIKTVRGLGYKAGD 198 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.143 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,363,548,573 Number of extensions: 54817963 Number of successful extensions: 225243 Number of sequences better than 1.0e-05: 20951 Number of HSP's gapped: 193194 Number of HSP's successfully gapped: 20989 Length of query: 227 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 96 Effective length of database: 1,826,543,238 Effective search space: 175348150848 Effective search space used: 175348150848 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)