BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0579.0034.p (159 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KET2.1 B3KET2_9BACI Sensor protein EC=2.7.13.3 296 4e-79 A7GBS6.1 A7GBS6_CLOBL Sensor protein EC=2.7.13.3 225 8e-58 A6LV36.1 A6LV36_CLOB8 Sensor protein EC=2.7.13.3 207 3e-52 Q8ETA3.1 Q8ETA3_OCEIH Sensor protein EC=2.7.13.3 197 2e-49 C0GKV5.1 C0GKV5_9FIRM Sensor protein EC=2.7.13.3 197 3e-49 >B3KET2.1 B3KET2_9BACI Sensor protein EC=2.7.13.3 Length = 325 Score = 296 bits (758), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 144/159 (90%), Positives = 149/159 (93%) Query: 1 MDAKTIQFKKDRIPVKNLIQKALEPVMIPMDIKGQTVSIAGDDDVSFAGDFNWTVEAVIN 60 MDAKTI FKKDRIP+KNLIQKALEPVMIPMDIKGQTVSIAG+DDVSF GDFNWT EAVIN Sbjct: 167 MDAKTIPFKKDRIPMKNLIQKALEPVMIPMDIKGQTVSIAGNDDVSFVGDFNWTAEAVIN 226 Query: 61 ILKNGVEHTHEGGAITITFSENTLFTEIVIADNGKGIPKEDLPYIFKRFYKGKNAGEGSI 120 ILKNGVEH+ EGGAI I+FSEN L+TEIVIADNGKGIPKEDLPYIFKRFYKGKNA EGSI Sbjct: 227 ILKNGVEHSPEGGAIAISFSENALYTEIVIADNGKGIPKEDLPYIFKRFYKGKNASEGSI 286 Query: 121 GIGLAMAHSIIASQNGVIDVTSGSGKGTQFRIKFYKQVI 159 GIGLAMA SIIASQNGVIDVTS S KGTQFRIKFYKQVI Sbjct: 287 GIGLAMAQSIIASQNGVIDVTSDSEKGTQFRIKFYKQVI 325 >A7GBS6.1 A7GBS6_CLOBL Sensor protein EC=2.7.13.3 Length = 333 Score = 225 bits (574), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 106/159 (66%), Positives = 129/159 (81%) Query: 1 MDAKTIQFKKDRIPVKNLIQKALEPVMIPMDIKGQTVSIAGDDDVSFAGDFNWTVEAVIN 60 +DA T+ FKKD++ V LI+KA++P++IP++IK QT++I GD V+F GD NWT+EA+IN Sbjct: 175 IDAGTVNFKKDKVVVSTLIEKAIKPLLIPVEIKEQTLNIKGDSSVNFTGDLNWTIEALIN 234 Query: 61 ILKNGVEHTHEGGAITITFSENTLFTEIVIADNGKGIPKEDLPYIFKRFYKGKNAGEGSI 120 I+KN +EHT EGG I+I+F EN LFTEI I+DNG GIPKEDLPYIFKRFYKGKNA E SI Sbjct: 235 IIKNCIEHTQEGGTISISFDENPLFTEIKISDNGNGIPKEDLPYIFKRFYKGKNASEESI 294 Query: 121 GIGLAMAHSIIASQNGVIDVTSGSGKGTQFRIKFYKQVI 159 GIGLAMA SII SQNG I+VTS +GT F IKFYK I Sbjct: 295 GIGLAMAKSIITSQNGDINVTSRKNEGTCFNIKFYKVTI 333 >A6LV36.1 A6LV36_CLOB8 Sensor protein EC=2.7.13.3 Length = 333 Score = 207 bits (527), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 100/156 (64%), Positives = 121/156 (77%) Query: 1 MDAKTIQFKKDRIPVKNLIQKALEPVMIPMDIKGQTVSIAGDDDVSFAGDFNWTVEAVIN 60 +DA T+ FKKDR+ V LI+K+ EP++IP++IK QT+ I G +VSF GD WT EA+IN Sbjct: 175 IDAGTVSFKKDRVAVSELIRKSTEPLLIPIEIKNQTLVIEGGSNVSFIGDLYWTTEALIN 234 Query: 61 ILKNGVEHTHEGGAITITFSENTLFTEIVIADNGKGIPKEDLPYIFKRFYKGKNAGEGSI 120 I+KN +EHT E G I+I F EN LFTEI I DNG GI KEDLPYIFKRFYKGKNAGE S+ Sbjct: 235 IIKNCIEHTGEDGRISIFFDENPLFTEIKILDNGSGIEKEDLPYIFKRFYKGKNAGEDSV 294 Query: 121 GIGLAMAHSIIASQNGVIDVTSGSGKGTQFRIKFYK 156 GIGLAMA +I+ SQNG I+V+S +GT F IKFYK Sbjct: 295 GIGLAMAKTIVTSQNGDINVSSRKNEGTCFIIKFYK 330 >Q8ETA3.1 Q8ETA3_OCEIH Sensor protein EC=2.7.13.3 Length = 333 Score = 197 bits (502), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 95/159 (59%), Positives = 119/159 (74%) Query: 1 MDAKTIQFKKDRIPVKNLIQKALEPVMIPMDIKGQTVSIAGDDDVSFAGDFNWTVEAVIN 60 MDA TI F +RI V +LI + + P+ IPM++K G+ +V+F GD NWT EA+IN Sbjct: 175 MDAGTIPFAMERIFVSDLIDEVIAPLEIPMELKDIDFQKFGNREVTFLGDSNWTKEALIN 234 Query: 61 ILKNGVEHTHEGGAITITFSENTLFTEIVIADNGKGIPKEDLPYIFKRFYKGKNAGEGSI 120 I+KN +EHT EG ITI F EN L+TEI++ D GKGIPK+D+PYIFKRFYKG NA +GS+ Sbjct: 235 IMKNAIEHTPEGEHITIHFQENALYTEIIVQDTGKGIPKQDIPYIFKRFYKGGNATDGSV 294 Query: 121 GIGLAMAHSIIASQNGVIDVTSGSGKGTQFRIKFYKQVI 159 GIGLAMAHSI+ +Q G I+V S GKGT F +KFYKQVI Sbjct: 295 GIGLAMAHSIVTNQQGDIEVVSEEGKGTTFTLKFYKQVI 333 >C0GKV5.1 C0GKV5_9FIRM Sensor protein EC=2.7.13.3 Length = 418 Score = 197 bits (501), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 94/155 (60%), Positives = 116/155 (74%) Query: 2 DAKTIQFKKDRIPVKNLIQKALEPVMIPMDIKGQTVSIAGDDDVSFAGDFNWTVEAVINI 61 DA T+ KK+++ V L++KA+ + IP+DIK Q V I+G DVSF GD NW+ EA+INI Sbjct: 254 DAGTVVMKKEQVLVGQLVEKAVAAMEIPLDIKMQQVQISGASDVSFIGDLNWSCEALINI 313 Query: 62 LKNGVEHTHEGGAITITFSENTLFTEIVIADNGKGIPKEDLPYIFKRFYKGKNAGEGSIG 121 LKN +EHT E G I I+FSEN LFTEI I D+G GI KEDLPY+F RFYKGKNAG+ S+G Sbjct: 314 LKNCIEHTPERGRINISFSENPLFTEITITDSGVGIAKEDLPYLFNRFYKGKNAGDDSVG 373 Query: 122 IGLAMAHSIIASQNGVIDVTSGSGKGTQFRIKFYK 156 IGLAMAH+I++ Q G I V S +G G QF IK YK Sbjct: 374 IGLAMAHTIVSRQGGDIAVQSEAGSGAQFTIKLYK 408 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.138 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 964,517,786 Number of extensions: 41898889 Number of successful extensions: 161240 Number of sequences better than 1.0e-05: 11658 Number of HSP's gapped: 165930 Number of HSP's successfully gapped: 11683 Length of query: 159 Length of database: 3,060,696,203 Length adjustment: 120 Effective length of query: 39 Effective length of database: 1,930,174,403 Effective search space: 75276801717 Effective search space used: 75276801717 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 125 (52.8 bits)