BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0579.0033.p (315 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KET3.1 B3KET3_9BACI VanZ family protein 435 e-120 B1DKF2.1 B1DKF2_9BACL VanZ family protein 359 2e-97 C3BDC1.1 C3BDC1_BACMY Putative uncharacterized protein 228 7e-58 C3AUV7.1 C3AUV7_BACMY Putative uncharacterized protein 228 7e-58 C0ZFR7.1 C0ZFR7_BREBN Conserved hypothetical membrane protein 198 5e-49 >B3KET3.1 B3KET3_9BACI VanZ family protein Length = 312 Score = 435 bits (1118), Expect = e-120, Method: Compositional matrix adjust. Identities = 208/313 (66%), Positives = 245/313 (78%), Gaps = 1/313 (0%) Query: 3 MHLKQQRKIIFTITLFYTLFILYFMFLAFGRAGTVEYNTEYTFIFLPEDFFRLPGLSDLL 62 M KQQRKIIF IT+FYTLFILYF+F AFGR G + YTFIFLP+DFFRLPGLSDLL Sbjct: 1 MQSKQQRKIIFAITIFYTLFILYFLFFAFGRVGKADQIKGYTFIFLPDDFFRLPGLSDLL 60 Query: 63 HPTVMDLVGFGNIAAFIPFGILIXXXXXRTSFIRFMTLFILSIXXXXXXXXXXXXGSFDM 122 HPT+MD VGFGN+AAFIPFGILI RT+F+RFMTLF+LSI GSFDM Sbjct: 61 HPTLMDFVGFGNVAAFIPFGILIPLLY-RTNFVRFMTLFVLSILVLETIQALTFLGSFDM 119 Query: 123 NDVIQNSLGAAVGFGAYKIGFRSKNIWRNIAAAGISVVVLMIGIWGSFGLVDKALTKEKG 182 ND+IQNS GAA+GFGAYK+ FR KN WRNIAA+GIS +VLM+G+WG FG+VD+A TKE G Sbjct: 120 NDIIQNSTGAAIGFGAYKLSFRRKNYWRNIAASGISSIVLMLGVWGIFGMVDQAFTKEMG 179 Query: 183 PFVAINELKDSTGNPSAGTKRYRLKIGGQDVEPQYNLYSAEGKNKKTYKYTLDNKEEMYF 242 PFVAIN+L++STGNPS G K +IGGQDVEPQYN+Y+ EGKNK+TY YT K+E+Y Sbjct: 180 PFVAINDLRNSTGNPSTGLKTASFEIGGQDVEPQYNVYNIEGKNKETYTYTFGTKKELYL 239 Query: 243 SLNYGIPDQKDFHGSIRVAVDGHEFLSAAADYLRHESYMSEIFLQQANELTITIEGNVAM 302 LNYGIPDQ+D GSIRV DGHE+L+ + + RHE M I+ +A+ELTITIEGNV + Sbjct: 240 FLNYGIPDQQDSQGSIRVTADGHEYLTVSVEAGRHEPNMGLIYFPKADELTITIEGNVTL 299 Query: 303 WDVGLREMKYFWN 315 WDVG +EM Y WN Sbjct: 300 WDVGYQEMVYRWN 312 >B1DKF2.1 B1DKF2_9BACL VanZ family protein Length = 312 Score = 359 bits (922), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 188/315 (59%), Positives = 232/315 (73%), Gaps = 7/315 (2%) Query: 5 LKQQRKIIFTITLFYTLFILYFMFLAFGRAGTVEYNTEYTFIFLPEDFFRLPGLSDLLHP 64 + QQRKII TIT+FYT+ ILYF+FLAFGR G E T YTFIF P+DFF+LP +SDLL+P Sbjct: 1 MSQQRKIISTITIFYTMLILYFLFLAFGRVGAAERTTGYTFIFRPDDFFKLPSISDLLYP 60 Query: 65 TVMDLVGFGNIAAFIPFGILIXXXXXRTSFIRFMTLFILSIXXXXXXXXXXXXGSFDMND 124 T+MD VGFGN+AAFIPFGILI R +F+RF+TLF LSI GSFD+ND Sbjct: 61 TLMDFVGFGNLAAFIPFGILIPLLY-RITFVRFITLFFLSILVMETIQALTLLGSFDVND 119 Query: 125 VIQNSLGAAVGFGAYKIGFRSKNIWRNIAAAGISVVVLMIGIWGSFGLVDKALTKEKGPF 184 I+NSLGAAVGFGAYK+G RSKN WRNIA IS +VL++G+WG G+VDK TKE+GPF Sbjct: 120 AIRNSLGAAVGFGAYKLGVRSKNGWRNIAMTAISCMVLLLGLWGLCGIVDKTFTKEEGPF 179 Query: 185 VAINELKDSTGNPSAGTKRYRLKIGGQDVEPQYNLYSAEGKNKKTYKYTLDNKEEMYFSL 244 VAINELKDS+GN S G K KI GQ+V+P+YN+Y EG+N KT+ YT KE+ FSL Sbjct: 180 VAINELKDSSGNSSMGKKTNSFKISGQNVKPRYNMYGVEGENLKTFTYTY--KEKFIFSL 237 Query: 245 NYGIPDQKDFHGSIRVAVDGHEFLSAAADYLRHESYM----SEIFLQQANELTITIEGNV 300 YGIPDQ D+ GSIRV+V+G E ++ + + R + EI ++ +ELTITIEGN Sbjct: 238 YYGIPDQTDYSGSIRVSVNGLEVMTGSGEDQRRYPELFPAICEIPIEAGSELTITIEGNE 297 Query: 301 AMWDVGLREMKYFWN 315 +WDVG R+MK+FWN Sbjct: 298 KIWDVGYRKMKFFWN 312 >C3BDC1.1 C3BDC1_BACMY Putative uncharacterized protein Length = 302 Score = 228 bits (580), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 120/309 (38%), Positives = 182/309 (58%), Gaps = 12/309 (3%) Query: 7 QQRKIIFTITLFYTLFILYFMFLAFGRAGTVEYNTEYTFIFLPEDFFRLP-GLSDLLHPT 65 + RKII T+ YT+ +L+FMF AF R +V YTFI +PE R+P DL + Sbjct: 4 KSRKIILAGTICYTILVLFFMFFAFNRLDSVTSVERYTFILIPE---RVPLKFPDLNYSW 60 Query: 66 VMDLVGFGNIAAFIPFGILIXXXXXRTSFIRFMTLFILSIXXXXXXXXXXXXGSFDMNDV 125 ++D FGNIAAFIPFGIL R F +F++LF+L+I GSFD+NDV Sbjct: 61 IVD---FGNIAAFIPFGILFPLLY-RVRFGKFISLFVLAILVLETIQALTYLGSFDVNDV 116 Query: 126 IQNSLGAAVGFGAYKIGFRSKNIWRNIAAAGISVVVLMIGIWGSFGLVDKALTKEKGPFV 185 I N+LGA +G+ Y++GF SK ++ + A+ +S+VVL+IG+ +V + + K +GP Sbjct: 117 ISNTLGAMIGYVTYRVGFSSKISYKKLMASTLSIVVLIIGVM----VVSEIIKKREGPIQ 172 Query: 186 AINELKDSTGNPSAGTKRYRLKIGGQDVEPQYNLYSAEGKNKKTYKYTLDNKEEMYFSLN 245 +N +K+ TG + G+ +EP+ N+YS+EG++ KTY Y L NKE ++ Sbjct: 173 TLNVMKEMTGTTPIIENLPNFTVAGERIEPKMNVYSSEGESTKTYNYILGNKENVWLYFY 232 Query: 246 YGIPDQKDFHGSIRVAVDGHEFLSAAADYLRHESYMSEIFLQQANELTITIEGNVAMWDV 305 +GIPD DF G ++ VDG E + + E+ + NELTI++ GN +WD+ Sbjct: 233 FGIPDNVDFKGEAKIIVDGQEVYRLNEQSSQGAEALRELPFNKVNELTISVSGNAKLWDI 292 Query: 306 GLREMKYFW 314 G+R M+++W Sbjct: 293 GIRGMQHWW 301 >C3AUV7.1 C3AUV7_BACMY Putative uncharacterized protein Length = 302 Score = 228 bits (580), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 120/309 (38%), Positives = 182/309 (58%), Gaps = 12/309 (3%) Query: 7 QQRKIIFTITLFYTLFILYFMFLAFGRAGTVEYNTEYTFIFLPEDFFRLP-GLSDLLHPT 65 + RKII T+ YT+ +L+FMF AF R +V YTFI +PE R+P DL + Sbjct: 4 KSRKIILAGTICYTILVLFFMFFAFNRLDSVTSVERYTFILIPE---RVPLKFPDLNYSW 60 Query: 66 VMDLVGFGNIAAFIPFGILIXXXXXRTSFIRFMTLFILSIXXXXXXXXXXXXGSFDMNDV 125 ++D FGNIAAFIPFGIL R F +F++LF+L+I GSFD+NDV Sbjct: 61 IVD---FGNIAAFIPFGILFPLLY-RVRFGKFISLFVLAILVLETIQALTYLGSFDVNDV 116 Query: 126 IQNSLGAAVGFGAYKIGFRSKNIWRNIAAAGISVVVLMIGIWGSFGLVDKALTKEKGPFV 185 I N+LGA +G+ Y++GF SK ++ + A+ +S+VVL+IG+ +V + + K +GP Sbjct: 117 ISNTLGAMIGYVTYRVGFSSKISYKKLMASTLSIVVLIIGVM----VVSEIIKKREGPIQ 172 Query: 186 AINELKDSTGNPSAGTKRYRLKIGGQDVEPQYNLYSAEGKNKKTYKYTLDNKEEMYFSLN 245 +N +K+ TG + G+ +EP+ N+YS+EG++ KTY Y L NKE ++ Sbjct: 173 TLNVMKEMTGTTPIIENLPNFTVAGERIEPKMNVYSSEGESTKTYNYILGNKENVWLYFY 232 Query: 246 YGIPDQKDFHGSIRVAVDGHEFLSAAADYLRHESYMSEIFLQQANELTITIEGNVAMWDV 305 +GIPD DF G ++ VDG E + + E+ + NELTI++ GN +WD+ Sbjct: 233 FGIPDNVDFKGEAKIIVDGQEVYRLNEQSSQGAEALRELPFNKVNELTISVSGNAKLWDI 292 Query: 306 GLREMKYFW 314 G+R M+++W Sbjct: 293 GIRGMQHWW 301 >C0ZFR7.1 C0ZFR7_BREBN Conserved hypothetical membrane protein Length = 302 Score = 198 bits (504), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 112/309 (36%), Positives = 172/309 (55%), Gaps = 12/309 (3%) Query: 7 QQRKIIFTITLFYTLFILYFMFLAFGRAGTVEYNTEYTFIFLPEDF-FRLPGLSDLLHPT 65 + RKII T+ YT+ IL+FMF AF R YTFI +PE P L T Sbjct: 4 KSRKIILVGTICYTILILFFMFFAFNRLDGATSVDGYTFILVPEGVPLTFPEL------T 57 Query: 66 VMDLVGFGNIAAFIPFGILIXXXXXRTSFIRFMTLFILSIXXXXXXXXXXXXGSFDMNDV 125 +V FGN+AAFIPFGIL R F +F++LF+L+I GSFD+NDV Sbjct: 58 YSWIVDFGNVAAFIPFGILFPLLY-RVRFGKFISLFVLTIFVLETVQALTYLGSFDVNDV 116 Query: 126 IQNSLGAAVGFGAYKIGFRSKNIWRNIAAAGISVVVLMIGIWGSFGLVDKALTKEKGPFV 185 I N++GAA+G+ AY++GF S ++ + A+ +++VVL+ +V + L K +GP Sbjct: 117 ISNTIGAAIGYVAYRVGFSSNLSYKKLMASALTIVVLVF----GVMVVSEILKKREGPVQ 172 Query: 186 AINELKDSTGNPSAGTKRYRLKIGGQDVEPQYNLYSAEGKNKKTYKYTLDNKEEMYFSLN 245 ++ +K+ TG + G+ +EP+ N+YS+EG++ KTY Y L N++ ++ S Sbjct: 173 SLTVVKEMTGTTPMTENLPSFSVAGEQIEPKMNVYSSEGESTKTYHYILGNQKNVWLSFY 232 Query: 246 YGIPDQKDFHGSIRVAVDGHEFLSAAADYLRHESYMSEIFLQQANELTITIEGNVAMWDV 305 +GIPD G ++ VDG E + + E+ + NE+TI + GN +WDV Sbjct: 233 FGIPDNGGSKGEAKIIVDGQEIAQLNEQSYQGAEALREMPFNEVNEITIIVSGNAKLWDV 292 Query: 306 GLREMKYFW 314 G+R M+++W Sbjct: 293 GIRGMQHWW 301 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.325 0.142 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,783,100,680 Number of extensions: 73224513 Number of successful extensions: 234199 Number of sequences better than 1.0e-05: 13 Number of HSP's gapped: 234225 Number of HSP's successfully gapped: 13 Length of query: 315 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 180 Effective length of database: 1,788,859,178 Effective search space: 321994652040 Effective search space used: 321994652040 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 131 (55.1 bits)