BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0579.0032.p (229 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KET4.1 B3KET4_9BACI ABC transporter related 405 e-111 A7GBS7.1 A7GBS7_CLOBL ABC transporter, ATP-binding protein 378 e-103 A6LV37.1 A6LV37_CLOB8 ABC transporter related 378 e-103 Q2BCN3.1 Q2BCN3_9BACI ABC transporter ATP-binding protein 371 e-101 Q8ETA2.1 Q8ETA2_OCEIH ABC transporter ATP-binding protein 366 e-100 >B3KET4.1 B3KET4_9BACI ABC transporter related Length = 227 Score = 405 bits (1041), Expect = e-111, Method: Compositional matrix adjust. Identities = 197/226 (87%), Positives = 214/226 (94%) Query: 3 MEILRIEHLSKIYGTGESAVKALDEVSFSVQKGEFXXXXGPSGSGKSTLLHMLGGVDRPS 62 MEIL IEHLSKIYGTGESAVKALD+VSFSVQKGEF GPSGSGKSTLLH+LGGVDRP+ Sbjct: 1 MEILNIEHLSKIYGTGESAVKALDDVSFSVQKGEFVAIIGPSGSGKSTLLHLLGGVDRPT 60 Query: 63 GGKVFVEDTDMYALNETQLAIFRRRQIGLIYQFFNLLPVLTVEENMTLPLLLDNQKVDQK 122 GKVFVE+TD+YAL+ET+LAIFRRRQIGLIYQFFNL+P LTV+ENMTLPLLLDNQ+ D+K Sbjct: 61 SGKVFVENTDIYALDETRLAIFRRRQIGLIYQFFNLIPTLTVKENMTLPLLLDNQQEDKK 120 Query: 123 QLDGLVHTLHLQHRLNHLPNQLSGGQQQRVSIGRALIGNPAIMLADEPTGNLDSKNSNEI 182 Q DGLV TL+L+HRLNHLPNQLSGGQQQRVSIGRA+I NPAIMLADEPTGNLDSKNS+EI Sbjct: 121 QFDGLVKTLNLEHRLNHLPNQLSGGQQQRVSIGRAIISNPAIMLADEPTGNLDSKNSSEI 180 Query: 183 IDLLKMLNKTYHQTLIVITHDERIALQADRIISIEDGRIAKDEVIR 228 +DLLKMLNKTYHQTLIVITHDERIALQADRIISI DG+IAKDEVIR Sbjct: 181 VDLLKMLNKTYHQTLIVITHDERIALQADRIISIVDGKIAKDEVIR 226 >A7GBS7.1 A7GBS7_CLOBL ABC transporter, ATP-binding protein Length = 227 Score = 378 bits (971), Expect = e-103, Method: Compositional matrix adjust. Identities = 179/226 (79%), Positives = 209/226 (92%) Query: 3 MEILRIEHLSKIYGTGESAVKALDEVSFSVQKGEFXXXXGPSGSGKSTLLHMLGGVDRPS 62 MEIL+IEHLSKIYG+G++A+KAL++VSFSV+KGEF GPSGSGKSTLLHM+GGVDRP+ Sbjct: 1 MEILKIEHLSKIYGSGDTAIKALNDVSFSVEKGEFVAIIGPSGSGKSTLLHMIGGVDRPT 60 Query: 63 GGKVFVEDTDMYALNETQLAIFRRRQIGLIYQFFNLLPVLTVEENMTLPLLLDNQKVDQK 122 GKV V++TD+Y LNETQLAIFRRRQIGLIYQF+NL+PVL VEEN+TLPLLLD KVD+K Sbjct: 61 SGKVLVDNTDIYNLNETQLAIFRRRQIGLIYQFYNLIPVLNVEENITLPLLLDGHKVDKK 120 Query: 123 QLDGLVHTLHLQHRLNHLPNQLSGGQQQRVSIGRALIGNPAIMLADEPTGNLDSKNSNEI 182 +LD ++ L+L+ RLNHLPNQLSGGQQQRVSIGRA+I NPAIMLADEPTGNLDSKNSNEI Sbjct: 121 KLDEIIKILNLEKRLNHLPNQLSGGQQQRVSIGRAIISNPAIMLADEPTGNLDSKNSNEI 180 Query: 183 IDLLKMLNKTYHQTLIVITHDERIALQADRIISIEDGRIAKDEVIR 228 I+LLKM NKT++QTLI+ITHDERIALQADRII+IEDG++ KDEVIR Sbjct: 181 IELLKMFNKTFNQTLIIITHDERIALQADRIIAIEDGKVKKDEVIR 226 >A6LV37.1 A6LV37_CLOB8 ABC transporter related Length = 236 Score = 378 bits (970), Expect = e-103, Method: Compositional matrix adjust. Identities = 181/226 (80%), Positives = 206/226 (91%) Query: 3 MEILRIEHLSKIYGTGESAVKALDEVSFSVQKGEFXXXXGPSGSGKSTLLHMLGGVDRPS 62 MEILRIEHLSK+YG G++AVKAL++VSFSV+KGEF GPSGSGKSTLLHMLGGVDRP+ Sbjct: 10 MEILRIEHLSKVYGVGDTAVKALNDVSFSVEKGEFVAIIGPSGSGKSTLLHMLGGVDRPT 69 Query: 63 GGKVFVEDTDMYALNETQLAIFRRRQIGLIYQFFNLLPVLTVEENMTLPLLLDNQKVDQK 122 GKV V++TD+Y L+ETQLAIFRRRQIGLIYQF+NL+PVL VEEN+TLPLLLD KVD+K Sbjct: 70 SGKVLVDNTDIYNLDETQLAIFRRRQIGLIYQFYNLIPVLNVEENITLPLLLDGHKVDKK 129 Query: 123 QLDGLVHTLHLQHRLNHLPNQLSGGQQQRVSIGRALIGNPAIMLADEPTGNLDSKNSNEI 182 Q D ++ L+L+ RLNHLPNQLSGGQQQRVSIGRALI NPAIMLADEPTGNLDSKNS+EI Sbjct: 130 QFDEIIKILNLEKRLNHLPNQLSGGQQQRVSIGRALISNPAIMLADEPTGNLDSKNSSEI 189 Query: 183 IDLLKMLNKTYHQTLIVITHDERIALQADRIISIEDGRIAKDEVIR 228 +DLLKM NKT++QTLI+ITHDERIALQADRII+IEDG I KDEVIR Sbjct: 190 VDLLKMFNKTFNQTLIIITHDERIALQADRIIAIEDGEIKKDEVIR 235 >Q2BCN3.1 Q2BCN3_9BACI ABC transporter ATP-binding protein Length = 227 Score = 371 bits (953), Expect = e-101, Method: Compositional matrix adjust. Identities = 177/226 (78%), Positives = 208/226 (92%) Query: 3 MEILRIEHLSKIYGTGESAVKALDEVSFSVQKGEFXXXXGPSGSGKSTLLHMLGGVDRPS 62 MEIL+IE+LSK+YG+G++AVKALD+VSFSV KGEF GPSGSGKSTLLHMLGGVDRP+ Sbjct: 1 MEILKIENLSKVYGSGDTAVKALDDVSFSVNKGEFVAIIGPSGSGKSTLLHMLGGVDRPT 60 Query: 63 GGKVFVEDTDMYALNETQLAIFRRRQIGLIYQFFNLLPVLTVEENMTLPLLLDNQKVDQK 122 GG+V V++TD+Y LNETQLAIFRRRQIGLIYQF+NL+P+L+VEEN+TLP+LLD QKVD+ Sbjct: 61 GGRVLVDNTDIYKLNETQLAIFRRRQIGLIYQFYNLIPILSVEENITLPMLLDGQKVDRG 120 Query: 123 QLDGLVHTLHLQHRLNHLPNQLSGGQQQRVSIGRALIGNPAIMLADEPTGNLDSKNSNEI 182 QL+ +V L LQ+RL+HLPNQLSGGQQQRVSIGRALI PAIMLADEPTGNLDS+NS EI Sbjct: 121 QLEEIVGILGLQNRLSHLPNQLSGGQQQRVSIGRALISRPAIMLADEPTGNLDSRNSGEI 180 Query: 183 IDLLKMLNKTYHQTLIVITHDERIALQADRIISIEDGRIAKDEVIR 228 ++LLKM NKTY QTLIVITHDERIA+QADR+ISIEDG++AK+EVIR Sbjct: 181 MELLKMFNKTYKQTLIVITHDERIAMQADRVISIEDGKVAKNEVIR 226 >Q8ETA2.1 Q8ETA2_OCEIH ABC transporter ATP-binding protein Length = 227 Score = 366 bits (940), Expect = e-100, Method: Compositional matrix adjust. Identities = 175/226 (77%), Positives = 204/226 (90%) Query: 3 MEILRIEHLSKIYGTGESAVKALDEVSFSVQKGEFXXXXGPSGSGKSTLLHMLGGVDRPS 62 ME+L+IE+LSK+YG G++AVKALD++SFSV KGEF GPSGSGKSTLLH+LGGVDRP+ Sbjct: 1 MEMLKIENLSKVYGKGDTAVKALDDISFSVDKGEFVAIIGPSGSGKSTLLHLLGGVDRPT 60 Query: 63 GGKVFVEDTDMYALNETQLAIFRRRQIGLIYQFFNLLPVLTVEENMTLPLLLDNQKVDQK 122 GKVFV+ TDMY L+ETQLAIFRRRQIGLIYQF+NLLP+LTVEEN+TLPLLLD+ KVDQK Sbjct: 61 EGKVFVDGTDMYELSETQLAIFRRRQIGLIYQFYNLLPILTVEENITLPLLLDSHKVDQK 120 Query: 123 QLDGLVHTLHLQHRLNHLPNQLSGGQQQRVSIGRALIGNPAIMLADEPTGNLDSKNSNEI 182 +V L LQ R+ +LPNQLSGGQQQRVSIGRA+I NP+I+LADEPTGNLDS+NS EI Sbjct: 121 HFKEIVDILGLQKRIEYLPNQLSGGQQQRVSIGRAIISNPSIILADEPTGNLDSENSKEI 180 Query: 183 IDLLKMLNKTYHQTLIVITHDERIALQADRIISIEDGRIAKDEVIR 228 +DLLKM N+TY+QTL+VITHD+RIALQADR+ISIEDGRIAKDEVIR Sbjct: 181 VDLLKMFNRTYNQTLVVITHDDRIALQADRVISIEDGRIAKDEVIR 226 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.138 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,331,812,658 Number of extensions: 55916115 Number of successful extensions: 453540 Number of sequences better than 1.0e-05: 90945 Number of HSP's gapped: 333708 Number of HSP's successfully gapped: 97817 Length of query: 229 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 98 Effective length of database: 1,826,543,238 Effective search space: 179001237324 Effective search space used: 179001237324 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)