BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0579.0031.p (301 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KET5.1 B3KET5_9BACI Putative uncharacterized protein 475 e-132 A7GBS8.1 A7GBS8_CLOBL ABC transporter, permease protein 275 4e-72 A6LV38.1 A6LV38_CLOB8 Putative uncharacterized protein 270 1e-70 Q2BCN4.1 Q2BCN4_9BACI Putative uncharacterized protein 232 3e-59 Q8ETA1.1 Q8ETA1_OCEIH Hypothetical conserved protein 231 5e-59 >B3KET5.1 B3KET5_9BACI Putative uncharacterized protein Length = 863 Score = 475 bits (1222), Expect = e-132, Method: Compositional matrix adjust. Identities = 221/265 (83%), Positives = 246/265 (92%) Query: 1 MNIVNTLTIRHLKQNKKRTLLTIIGVIISVAMVTAVTTLVFSFSDLMIRQTIAETGEWHV 60 MNIV L IR+LKQNK+RTL+TIIGVIISVAMVTAV TLVFSFSDLMIRQTIA++GEWHV Sbjct: 1 MNIVYKLAIRNLKQNKRRTLVTIIGVIISVAMVTAVATLVFSFSDLMIRQTIADSGEWHV 60 Query: 61 QYQDVTKEQLAAIQGDNAAKTVAITKDLGYAPLEGGQNPNKPYLFIKEYNAQGFTQFPIE 120 QYQDVTKEQLAAIQ D A KTVAIT+DLG+APLEGGQNPNKPYLFIKEY+AQGFTQF +E Sbjct: 61 QYQDVTKEQLAAIQADEATKTVAITRDLGFAPLEGGQNPNKPYLFIKEYDAQGFTQFQVE 120 Query: 121 LSKGRLPHTDKEVVMSEAVATNSKVKVEIGDRLTLRVGERFEQGGDHPLDQTEPLRREDG 180 LSKGRLP TDKEVV+SE V TN+KVK EIGDRLTLR+GERFEQGGDHPLDQTEPLRRE+G Sbjct: 121 LSKGRLPLTDKEVVISEPVVTNAKVKYEIGDRLTLRIGERFEQGGDHPLDQTEPLRREEG 180 Query: 181 ILTETLQHLMTKDYTVVGFIKRPVWETAWAPGYTLLSYIDENIIGANDRVNAAVVLQKVN 240 LTETLQH+ T+DYTVVG+IKRP WETAW+PGYT++SY+DEN++GA D VNAAVVLQK+ Sbjct: 181 ALTETLQHIETRDYTVVGYIKRPEWETAWSPGYTMISYVDENMMGAKDHVNAAVVLQKIK 240 Query: 241 PSLFAHAENLAKRNHIETVQYNNDL 265 PSLFAHAEN+AKRN IE+VQYNNDL Sbjct: 241 PSLFAHAENVAKRNGIESVQYNNDL 265 >A7GBS8.1 A7GBS8_CLOBL ABC transporter, permease protein Length = 871 Score = 275 bits (703), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 134/293 (45%), Positives = 200/293 (68%), Gaps = 9/293 (3%) Query: 1 MNIVNTLTIRHLKQNKKRTLLTIIGVIISVAMVTAVTTLVFSFSDLMIRQTIAETGEWHV 60 MNIVN LT+R++K NKKRTL+TIIGVIIS AM+T V TL SF DL RQ I++ GEWHV Sbjct: 1 MNIVNKLTLRYMKLNKKRTLITIIGVIISAAMITGVATLGISFMDLEKRQIISDEGEWHV 60 Query: 61 QYQDVTKEQLAAIQGDNAAKTVAITKDLGYAPLEGGQNPNKPYLFIKEYNAQGFTQFPIE 120 Y+D+ QL AI+ D K + +++DLG A L +N ++PY+FI+EYN +GF +FPIE Sbjct: 61 IYKDINNTQLQAIKNDKETKQIMLSRDLGCALLNQSRNKSRPYMFIREYNKEGFEKFPIE 120 Query: 121 LSKGRLPHTDKEVVMSEAVATNSKVKVEIGDRLTLRVGERF---EQGGDHPLDQTEPLRR 177 L +GR P T+ EVV+S+A+ N+KV +IGD +T+ +G+R+ +G + L Q L++ Sbjct: 121 LVEGRFPKTENEVVISDAIINNAKVNYKIGDIITVDIGKRYSKDSKGKNEALIQYSDLKK 180 Query: 178 EDGILTETLQHLM----TKDYTVVGFIKRPVWETAWAPGYTLLSYIDENIIGANDRVNAA 233 + T T++ + TK Y +VG IKR +E WAPGYT+LSY++EN I + ++VNA+ Sbjct: 181 DKN--TNTVEEFLIKENTKTYKIVGVIKRLKFEPTWAPGYTVLSYVNENNITSKEKVNAS 238 Query: 234 VVLQKVNPSLFAHAENLAKRNHIETVQYNNDLXXXXRLVQKQSLVQHDVLLSG 286 + L+ +N LF+HA+N+A +N I+ V++N++L +V+ +L + LS Sbjct: 239 ITLKNINRGLFSHAKNIAHKNKIKIVEFNDNLLRFYGVVKDDTLYSMILTLSA 291 >A6LV38.1 A6LV38_CLOB8 Putative uncharacterized protein Length = 869 Score = 270 bits (689), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 142/287 (49%), Positives = 197/287 (68%), Gaps = 5/287 (1%) Query: 1 MNIVNTLTIRHLKQNKKRTLLTIIGVIISVAMVTAVTTLVFSFSDLMIRQTIAETGEWHV 60 MNI+N LT+RHLK NKKRT++TIIGVIIS AMVT V TLV SF D+M RQ+IA GEWHV Sbjct: 1 MNIINKLTLRHLKLNKKRTIVTIIGVIISAAMVTGVATLVVSFMDVMQRQSIANEGEWHV 60 Query: 61 QYQDVTKEQLAAIQGDNAAKTVAITKDLGYAPLEGGQNPNKPYLFIKEYNAQGFTQFPIE 120 Y+D+ QL +I+ D K V +++DLGYA L G +N +KPYLFI+EYN +GF +FP+E Sbjct: 61 VYKDIDNVQLQSIKSDKNTKNVILSRDLGYAVLNGSKNVSKPYLFIQEYNKEGFRKFPVE 120 Query: 121 LSKGRLPHTDKEVVMSEAVATNSKVKVEIGDRLTLRVGERFE---QGGDHPLDQTEPLRR 177 LSKGR P EVV+SE + N+KV +IGD LT +G+R+ Q + L Q + ++ Sbjct: 121 LSKGRFPEATNEVVISEDIINNAKVNYKIGDTLTADIGKRYSKDNQNDNRVLTQNDYFQK 180 Query: 178 EDGILTETLQHLMTKDYTVVGFIKRPVWETAWAPGYTLLSYIDENIIGANDRVNAAVVLQ 237 ETL TK Y +VG IKRP +E WAPG+T+L Y+DEN + + ++ NA V+L+ Sbjct: 181 NKDTPGETLTKENTKTYKIVGVIKRPKFEPTWAPGFTVLGYVDENNVTSKEKENAFVILK 240 Query: 238 KVNPSLFAHAENLAKRNHIETVQYNNDLXXXXRLVQKQSLVQHDVLL 284 +N LF HA+++A +N I+TV++NN L +V+ S+ H+++L Sbjct: 241 SINRGLFDHAKDIALQNKIKTVEFNNSLLRYHGVVKDDSM--HNMIL 285 >Q2BCN4.1 Q2BCN4_9BACI Putative uncharacterized protein Length = 845 Score = 232 bits (592), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 117/267 (43%), Positives = 178/267 (66%), Gaps = 7/267 (2%) Query: 1 MNIVNTLTIRHLKQNKKRTLLTIIGVIISVAMVTAVTTLVFSFSDLMIRQTIAETGEWHV 60 MNI+N LT+RHLK+N++RTL+TIIGVIISVAMV+AV+TL SF +M ++ I +G+WHV Sbjct: 1 MNIINKLTLRHLKKNRRRTLVTIIGVIISVAMVSAVSTLFVSFLGMMKQEAIQNSGDWHV 60 Query: 61 QYQDVTKEQLAAIQGDNAAKTVAITKDLGYAPLEGGQNPNKPYLFIKEYNAQGFTQFPIE 120 Y+DV++ Q+ AI+ D + + T+D GY+ LE N N+PYLFIKE++++G FP+E Sbjct: 61 IYRDVSESQMEAIRKDEQTEKLFFTRDRGYSSLENPSNKNRPYLFIKEFDSEGMEHFPVE 120 Query: 121 LSKGRLPHTDKEVVMSEAVATNSKVKVEIGDRLTLRVGERFEQGGDHPLDQTEPLRREDG 180 LS+GRLP + EV+ + + K +IGD +TL +G+R D Q + L+ ++ Sbjct: 121 LSEGRLPKKENEVLFPKEIV--EKQNYQIGDEITLEIGDRHIPNDDRSFGQGDYLQYDET 178 Query: 181 ILTETLQHLMTKDYTVVGFIKRPVWETAWAPGYTLLSYIDENII--GANDRVNAAVVLQK 238 + ETL +T+VG ++RP WE APGYT++SY++++ GA D V ++K Sbjct: 179 EVIETLSKKEEGIFTIVGTMERPEWEPYSAPGYTIVSYMEQDPFKGGAAD---IGVTVKK 235 Query: 239 VNPSLFAHAENLAKRNHIETVQYNNDL 265 VN SL+ HA+ A++N I V +N++L Sbjct: 236 VNRSLYEHAKEQAEKNGITKVSFNSEL 262 >Q8ETA1.1 Q8ETA1_OCEIH Hypothetical conserved protein Length = 868 Score = 231 bits (590), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 120/271 (44%), Positives = 177/271 (65%), Gaps = 9/271 (3%) Query: 1 MNIVNTLTIRHLKQNKKRTLLTIIGVIISVAMVTAVTTLVFSFSDLMIRQTIAETGEWHV 60 MNIVN +TIRHLK+NK+RTL+TI+GVIISVAM+TAV TL SF DL RQTI TGEWH Sbjct: 1 MNIVNKVTIRHLKENKRRTLVTILGVIISVAMITAVATLGQSFLDLNQRQTIENTGEWHY 60 Query: 61 QYQDVTKEQLAAIQGDNAAKTVAITKDLGYAPLEGGQNPNKPYLFIKEYNAQGFTQFPIE 120 Y ++ ++Q A++ + +++ + +LGY+PL+G +KPY+++ + N G QF ++ Sbjct: 61 SYTNLNEQQYQAVKEHDKTESIGLMNELGYSPLDG--EGSKPYVYVHQLNKAGMDQFQVK 118 Query: 121 LSKGRLPHTDKEVVMSEAVATNSKVKVEIGDRLTLRVGERF----EQGGDHPLDQTEPLR 176 L GRLP EVV+SE + + K EIGD +TL VGER+ E G+ PL+QT Sbjct: 119 LQDGRLPENPDEVVLSETLLQSGYDK-EIGDTITLEVGERYSLSDEMEGEGPLNQTVSAE 177 Query: 177 REDGILTETLQHLMTKDYTVVGFIKRPVWETAWAPGYTLLSYIDENIIGANDRVNAAVVL 236 R + L E L++ +T+VG I+ P+W+ +WAPGY++LSYIDE+I+ + V V Sbjct: 178 RTEDGLAEELRNTEEHTFTIVGTIEEPLWDYSWAPGYSMLSYIDEDILSTEENVTVYVKS 237 Query: 237 QKVNPSLFAHAENLAKRNHI--ETVQYNNDL 265 ++ SLF + AK+ +I E +++N +L Sbjct: 238 NDISTSLFDDIPSFAKKQNIDQEQIEFNYNL 268 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.134 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,749,616,479 Number of extensions: 69092460 Number of successful extensions: 162870 Number of sequences better than 1.0e-05: 66 Number of HSP's gapped: 162841 Number of HSP's successfully gapped: 66 Length of query: 301 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 166 Effective length of database: 1,788,859,178 Effective search space: 296950623548 Effective search space used: 296950623548 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)