BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0579.0030.p (304 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KET5.1 B3KET5_9BACI Putative uncharacterized protein 469 e-130 A7GBS8.1 A7GBS8_CLOBL ABC transporter, permease protein 253 2e-65 A6LV38.1 A6LV38_CLOB8 Putative uncharacterized protein 252 3e-65 Q2BCN4.1 Q2BCN4_9BACI Putative uncharacterized protein 234 7e-60 Q8ETA1.1 Q8ETA1_OCEIH Hypothetical conserved protein 169 4e-40 >B3KET5.1 B3KET5_9BACI Putative uncharacterized protein Length = 863 Score = 469 bits (1208), Expect = e-130, Method: Compositional matrix adjust. Identities = 223/270 (82%), Positives = 249/270 (92%) Query: 27 TFWFMNAKIQGALWTNEQLVLTVTPLSLLIICVVSMLTIFISAYLPAIWASKVSAMDAIR 86 TFWFMN I+GALW++E+L + VTPLSLLI CVVSMLTIFIS YLPAI ASKVSA+DAIR Sbjct: 358 TFWFMNPMIEGALWSSEKLTVIVTPLSLLIACVVSMLTIFISTYLPAIKASKVSALDAIR 417 Query: 87 QTTDLKLTAKAVKTSKFIRRLFGIEAEIGLKNLKRNKRRYHAIVFSLVISIVLFLTVSFF 146 QT+D+KLTAKAVKTS+FIR+LFGIEAEIGLKNLKRNKRRYHAIVFSLVISIVLFLTVSFF Sbjct: 418 QTSDVKLTAKAVKTSRFIRKLFGIEAEIGLKNLKRNKRRYHAIVFSLVISIVLFLTVSFF 477 Query: 147 TTGMKQSLDLSQEGVNFDIEVSYSNGKRIDDRLIQSIVSLDGVKEYSLIHELSKNAWVDE 206 TTGMKQSL+LSQEGVN+DI++SYSNGKRIDDRL+QSIVSLDGV +Y+LI E K AWVDE Sbjct: 478 TTGMKQSLELSQEGVNYDIQLSYSNGKRIDDRLLQSIVSLDGVTDYNLIQEFYKQAWVDE 537 Query: 207 AFIADELQEKVKKDKSLLQDGKYPYEIKIHALNDSGLQAYAKAVGADYEQLTDPDHPAAI 266 A+IADELQE VKKDK LLQ GKYPYEIKIHALND LQAYA AVGA+YEQL DPDHPAAI Sbjct: 538 AYIADELQEMVKKDKGLLQGGKYPYEIKIHALNDLSLQAYANAVGANYEQLRDPDHPAAI 597 Query: 267 VMDTIHYKEMDTGKYVRTKAMYTNVGQSIE 296 VMDTI Y++MD+G+YV+TKA+YTNVGQ+ E Sbjct: 598 VMDTIRYQDMDSGRYVQTKAVYTNVGQNFE 627 >A7GBS8.1 A7GBS8_CLOBL ABC transporter, permease protein Length = 871 Score = 253 bits (646), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 132/277 (47%), Positives = 190/277 (68%), Gaps = 6/277 (2%) Query: 27 TFWFMNAKIQGALWTNEQLVLTVTPLSLLIICVVSMLTIFISAYLPAIWASKVSAMDAIR 86 TF +N I+GAL E + V+PL ++I VVS +TI IS Y+PA ASK+SA+DAIR Sbjct: 363 TFLCINHVIKGALGVTESFRVVVSPLIIVIAIVVSAITILISTYVPARKASKISAIDAIR 422 Query: 87 QTTDLKLTAKAVKTSKFIRRLFGIEAEIGLKNLKRNKRRYHAIVFSLVISIVLFLTVSFF 146 QT D+KLT K VK SK ++FGIE IGLKNLKRNK RY +VFSLVIS++LFL+VS F Sbjct: 423 QTADIKLTGKEVKVSKLTEKIFGIEGTIGLKNLKRNKGRYKTVVFSLVISMILFLSVSSF 482 Query: 147 TTGMKQSLDLSQEGVNFDIEVSYSNGKRID--DRLIQSIVSLDGVKEYSLIHELSKNAWV 204 T+ +K+SL LSQEG+NFDI + G ++ D +I+ I SL + E+ ++ L W+ Sbjct: 483 TSYLKKSLVLSQEGINFDINILLR-GSSLEEKDDIIKKIKSLGNITEFDEMNTLDARVWI 541 Query: 205 DEAFIADELQEKVKKDKSLLQDGKYPYEIKIHALNDSGLQAYAKAVGADYEQLTDPDHPA 264 ++ FIAD L+ +++S +++G YPY++ ++AL+D L+AYAK VGAD+ L + + Sbjct: 542 NKEFIADYLK---GENESEMKNGAYPYQVSVNALSDEALKAYAKKVGADFNLLNNTTKLS 598 Query: 265 AIVMDTIHYKEMDTGKYVRTKAMYTNVGQSIEXXXXN 301 AIV+DT YK+M++ KY+ TKA+ N G+ ++ N Sbjct: 599 AIVIDTAKYKDMESKKYIETKAVKVNKGEKLDLMYHN 635 >A6LV38.1 A6LV38_CLOB8 Putative uncharacterized protein Length = 869 Score = 252 bits (644), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 128/272 (47%), Positives = 190/272 (69%), Gaps = 6/272 (2%) Query: 27 TFWFMNAKIQGALWTNEQLVLTVTPLSLLIICVVSMLTIFISAYLPAIWASKVSAMDAIR 86 TF +N+ I+GAL E + V+PL ++ VVS LTI IS Y+PA AS +SA+DAIR Sbjct: 361 TFLCVNSMIRGALGITENFRVVVSPLIVIAAIVVSALTILISTYIPAKRASSISAIDAIR 420 Query: 87 QTTDLKLTAKAVKTSKFIRRLFGIEAEIGLKNLKRNKRRYHAIVFSLVISIVLFLTVSFF 146 QT+D+KLT K +KTS+F ++FGIE IGLKNLKRNK RY A VFSL IS++LFL+V+ Sbjct: 421 QTSDIKLTGKEIKTSRFTEKVFGIEGNIGLKNLKRNKGRYKATVFSLTISMILFLSVNSV 480 Query: 147 TTGMKQSLDLSQEGVNFDIEVSYSNGKRIDDR--LIQSIVSLDGVKEYSLIHELSKNAWV 204 T+ +K+S+ LSQ+G+NFDI V + GK +++ ++ I +LD +KE + ++ W+ Sbjct: 481 TSDLKKSVILSQDGINFDINVLIT-GKNAEEKNNTVKKISALDTIKELNQVNTFGAKVWI 539 Query: 205 DEAFIADELQEKVKKDKSLLQDGKYPYEIKIHALNDSGLQAYAKAVGADYEQLTDPDHPA 264 +E +AD L+ DKS++++G YPY I ++AL++ L+ YAK VG D+ L D + + Sbjct: 540 NENSMADYLK---GDDKSIMKNGAYPYSINVNALDNEALKIYAKEVGVDFNLLKDTNKIS 596 Query: 265 AIVMDTIHYKEMDTGKYVRTKAMYTNVGQSIE 296 AIV+DT+ YK+M+T KYV+TKA+ N G+ ++ Sbjct: 597 AIVIDTVKYKDMETQKYVQTKAVKVNKGEKLD 628 >Q2BCN4.1 Q2BCN4_9BACI Putative uncharacterized protein Length = 845 Score = 234 bits (597), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 118/270 (43%), Positives = 181/270 (67%), Gaps = 9/270 (3%) Query: 27 TFWFMNAKIQGALWTNEQLVLTVTPLSLLIICVVSMLTIFISAYLPAIWASKVSAMDAIR 86 TF MN L ++ L LTVTP+S+L+ C++S+LTIFIS Y+PA ASKVSA+DAIR Sbjct: 355 TFLVMNRTFGDTLGIDDGLTLTVTPMSILLSCLISILTIFISTYMPARKASKVSAIDAIR 414 Query: 87 QTTDLKLTAKAVKTSKFIRRLFGIEAEIGLKNLKRNKRRYHAIVFSLVISIVLFLTVSFF 146 Q+ D+KLT KAVKTS+ +R++FG+EAEIGLKNLKRNKRRY VFSLVI+IVLFL VS+F Sbjct: 415 QSQDVKLTGKAVKTSRLVRKIFGLEAEIGLKNLKRNKRRYQVTVFSLVITIVLFLAVSYF 474 Query: 147 TTGMKQSLDLSQEGVNFDIEVSYSNGKRIDDRLIQSIVSLDGVKEYSLIHELSKNAWVDE 206 T +KQS+ ++Q N+D+++ S D ++ ++L+ V + SL+ E + W++E Sbjct: 475 TANLKQSITMTQVNYNYDVQIYSSE----DQAALEPYMNLNYVSDASLMEEAYFSTWINE 530 Query: 207 AFIADELQEKVKKDKSLLQDGKYPYEIKIHALNDSGLQAYAKAVGADYEQLTDPDHPAAI 266 + + DE++ + + + +LQ GKYPY + +H +++ + YA +GAD +L D I Sbjct: 531 SELPDEVKAQ-EYYEDMLQGGKYPYSLVLHGIDEKSFKTYANKIGADVNELQD----KVI 585 Query: 267 VMDTIHYKEMDTGKYVRTKAMYTNVGQSIE 296 +++ Y+++ TGK + T + G ++ Sbjct: 586 ILNKFVYEDVQTGKKIETGGINGKPGDKLD 615 >Q8ETA1.1 Q8ETA1_OCEIH Hypothetical conserved protein Length = 868 Score = 169 bits (427), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 104/275 (37%), Positives = 161/275 (58%), Gaps = 16/275 (5%) Query: 27 TFWFMNAKIQGALWTNEQLVLTVTPLSLLIICVVSMLTIFISAYLPAIWASKVSAMDAIR 86 T +F+N + A + + L L + S+ I V+S +TI ISAY+PA+ ASKV+A+DAIR Sbjct: 361 TLYFVNQILSQAQF-DVDLQLVASFESIGIAVVISFITIMISAYIPAVRASKVTAIDAIR 419 Query: 87 QTTDLKLTAKAVKTSKFIRRLFGIEAEIGLKNLKRNKRRYHAIVFSLVISIVLFLTVSFF 146 Q+ D+KLT K VK + +R++FG EAEI LKNLKRNK+RY+ V SL++SIVLFL+V +F Sbjct: 420 QSKDIKLTKKKVKANPLVRKIFGYEAEIALKNLKRNKKRYNVTVLSLIVSIVLFLSVGYF 479 Query: 147 TTGMKQSLDLSQEGVNFDIEVSYSNG-------KRIDDRLIQSIVSLDGVKEYSLIHELS 199 + + +S +L +N+DI S + G K++ D IQ + ++G Y +H Sbjct: 480 SNTLTKSFELQSNQLNYDIAASSATGYGGVEGLKQVMDN-IQGLQEVNGAIMYQTMH--- 535 Query: 200 KNAWVDEAFIADELQEKVKKDKSLLQDGKYPYEIKIHALNDSGLQAYAKAVGADYEQLTD 259 + +V+E IA E + ++ + D Y I+ L+D LQ YA+ Y +D Sbjct: 536 MSGFVEEE-IAGEPIKTLENASDYISDQGVQYFIEFIGLDDKALQDYAQENEISY---SD 591 Query: 260 PDHPAAIVMDTIHYKEMDTGKYVRTKAMYTNVGQS 294 D I+++ + Y + + GKYV T+ + VG S Sbjct: 592 IDEGEGILINQVSYPDDNQGKYVETEILDAEVGDS 626 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.135 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,460,952,554 Number of extensions: 54887942 Number of successful extensions: 187367 Number of sequences better than 1.0e-05: 76 Number of HSP's gapped: 187374 Number of HSP's successfully gapped: 76 Length of query: 304 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 169 Effective length of database: 1,788,859,178 Effective search space: 302317201082 Effective search space used: 302317201082 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)