BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0579.0029.p (233 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KET5.1 B3KET5_9BACI Putative uncharacterized protein 347 4e-94 A7GBS8.1 A7GBS8_CLOBL ABC transporter, permease protein 235 3e-60 A6LV38.1 A6LV38_CLOB8 Putative uncharacterized protein 225 2e-57 Q8ETA1.1 Q8ETA1_OCEIH Hypothetical conserved protein 206 1e-51 Q2BCN4.1 Q2BCN4_9BACI Putative uncharacterized protein 206 2e-51 >B3KET5.1 B3KET5_9BACI Putative uncharacterized protein Length = 863 Score = 347 bits (891), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 177/229 (77%), Positives = 209/229 (91%) Query: 5 NGRKAEINKVSVAVLTDQAPMGMNTIGVGGLNIIVSERVMNRLADDEDIASVQTYLHLKS 64 N + ++++V+VA LTDQAPMGM+ GVGGLN+IVSE +M++LADDE++A++QTYL+LKS Sbjct: 635 NAEETKVSRVTVAALTDQAPMGMSGAGVGGLNMIVSEHIMDQLADDEELANLQTYLYLKS 694 Query: 65 TEPMTTQQEIEEMHETNLNATNSYQSRKSEEQQILLMSVFSYGFIVLISAISIANIFNTV 124 TEPM TQQEIEEM ETNLN N YQSRKSEEQQILL +VFSYGFIVLISAISIANIFNT+ Sbjct: 695 TEPMRTQQEIEEMFETNLNVYNVYQSRKSEEQQILLTAVFSYGFIVLISAISIANIFNTI 754 Query: 125 STGISLRKREFAMLKSVGMTPKGFAKMMNFENIFYGIKSLLFGLPVSFVVMYLIYRAFAN 184 STG+SLRKRE AMLKSVGMTPKGFAKMMN+E+IFYG+KSLLFGLPVSF VM LIYR+FAN Sbjct: 755 STGLSLRKREIAMLKSVGMTPKGFAKMMNYESIFYGVKSLLFGLPVSFAVMILIYRSFAN 814 Query: 185 KFSYGFTLPWMSILSVIVAVFVIVGSAIVYSGAKAKKENIIDALKKESI 233 +FSYGFT+PW+S+LSV+VAVFVIV SAI++S K KKENIIDALK+E+I Sbjct: 815 RFSYGFTVPWLSVLSVVVAVFVIVVSAIIFSSRKLKKENIIDALKQENI 863 >A7GBS8.1 A7GBS8_CLOBL ABC transporter, permease protein Length = 871 Score = 235 bits (599), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 119/228 (52%), Positives = 165/228 (72%), Gaps = 7/228 (3%) Query: 11 INKVSVAVLTDQAPMGMNTIGVG-GLNIIVSERVMNRL--ADDEDIASVQTYLHLKSTEP 67 +N V + +TD+ PMG+ + G NI+VS++V++++ D I T L +KS +P Sbjct: 644 LNPVEIVSVTDKLPMGILSEGKNPSFNIVVSKKVLDKIISKDKNTIKDKNTSLFIKSNDP 703 Query: 68 MTTQQEIEEMHETNLNATNS----YQSRKSEEQQILLMSVFSYGFIVLISAISIANIFNT 123 MT Q IE + +++ NS + +R+ + Q I+L+SVF+YGFI LI+AI IANI NT Sbjct: 704 MTLQNGIETIQDSSGEIINSVYNVFMNRQRDNQTIVLISVFTYGFIALITAICIANILNT 763 Query: 124 VSTGISLRKREFAMLKSVGMTPKGFAKMMNFENIFYGIKSLLFGLPVSFVVMYLIYRAFA 183 +ST I+LRKREFAMLKSVGMTPK F KM+N+E+IFYGIK+LL+G+P+S +MYLI+ Sbjct: 764 ISTSIALRKREFAMLKSVGMTPKSFNKMINYESIFYGIKALLYGIPISIFIMYLIHETLM 823 Query: 184 NKFSYGFTLPWMSILSVIVAVFVIVGSAIVYSGAKAKKENIIDALKKE 231 KFS+ FTLPW++IL +VAVF+IVG A++YS +K KKENII ALK E Sbjct: 824 EKFSFKFTLPWINILLAVVAVFIIVGVAMLYSSSKVKKENIIYALKNE 871 >A6LV38.1 A6LV38_CLOB8 Putative uncharacterized protein Length = 869 Score = 225 bits (574), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 116/232 (50%), Positives = 159/232 (68%), Gaps = 7/232 (3%) Query: 7 RKAEINKVSVAVLTDQAPMGMNTIGVGG-LNIIVSERVMNRL--ADDEDIASVQTYLHLK 63 + I V +A TD+ P G+ + NIIVS V +++ + S+ T L +K Sbjct: 638 KDEPITSVEIAAATDKLPTGVFSQDANPEFNIIVSREVFDKIIGVRGNIVESIDTNLFIK 697 Query: 64 STEPMTTQQEIEEM----HETNLNATNSYQSRKSEEQQILLMSVFSYGFIVLISAISIAN 119 S +P+T Q +IE + + ++ N + +R+ E Q I+LMSVF YGF+ LI AI +AN Sbjct: 698 SNDPVTLQTDIETIINAGSDNRMSIQNVFMNRQRENQIIVLMSVFGYGFVALIIAICVAN 757 Query: 120 IFNTVSTGISLRKREFAMLKSVGMTPKGFAKMMNFENIFYGIKSLLFGLPVSFVVMYLIY 179 I NT+ST ++LRKREFAMLKSVGMTPK F KM+N+E+IFYGIKSL +GLPVS +MYLI+ Sbjct: 758 ILNTISTSVALRKREFAMLKSVGMTPKSFNKMINYESIFYGIKSLAYGLPVSIGIMYLIH 817 Query: 180 RAFANKFSYGFTLPWMSILSVIVAVFVIVGSAIVYSGAKAKKENIIDALKKE 231 R KF + F LPW+SILS +V+VF+IVG A++YS ++ K+ENIIDALK E Sbjct: 818 RIIMGKFDFNFILPWVSILSAVVSVFIIVGVAMLYSSSRVKRENIIDALKSE 869 >Q8ETA1.1 Q8ETA1_OCEIH Hypothetical conserved protein Length = 868 Score = 206 bits (524), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 102/224 (45%), Positives = 154/224 (68%), Gaps = 1/224 (0%) Query: 11 INKVSVAVLTDQAPMGMNTIGVGGLNIIVSERVMNRLADDEDIASVQTYLHLKSTEPMTT 70 +++V +A LTD PMG L +VSE + + + + L++++ +P++T Sbjct: 645 VSQVDIAGLTDHFPMGNFYPSPNTLFFVVSEDTLANIDEQTEYQPNAMTLYIETEDPVST 704 Query: 71 QQEIEEMHETN-LNATNSYQSRKSEEQQILLMSVFSYGFIVLISAISIANIFNTVSTGIS 129 Q+ IE + N L+ N + + + Q L++S+F YGFI LI+ IS+ANIFNT+ST ++ Sbjct: 705 QEHIEGLEVANELHIANQFYYEQQDRQMTLVLSIFVYGFITLITLISVANIFNTISTSVA 764 Query: 130 LRKREFAMLKSVGMTPKGFAKMMNFENIFYGIKSLLFGLPVSFVVMYLIYRAFANKFSYG 189 LR+REFA +KS+GMTPK F KM+ FE++FYG+KSLL+GLP+S VMY+IY N FSY Sbjct: 765 LRRREFATMKSIGMTPKAFRKMIQFESVFYGLKSLLYGLPLSIGVMYVIYNQSQNTFSYS 824 Query: 190 FTLPWMSILSVIVAVFVIVGSAIVYSGAKAKKENIIDALKKESI 233 F+LPW++I I+AVFVIV A++YS +K K +NII+ L++E+I Sbjct: 825 FSLPWINISIAILAVFVIVSVAMLYSISKIKDDNIIETLRQENI 868 >Q2BCN4.1 Q2BCN4_9BACI Putative uncharacterized protein Length = 845 Score = 206 bits (523), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 106/212 (50%), Positives = 155/212 (73%), Gaps = 2/212 (0%) Query: 22 QAPMGMNTIGVGGLNIIVSERVMNRLADDEDIASVQTYLHLKSTEPMTTQQEIEEMHETN 81 +APMG+ +G +++++ ++ +L ++ A L L S++P Q +++++ N Sbjct: 636 EAPMGILPLGNYEVHLLMPQKQFEQLK--QNSAETSYSLFLDSSKPEEMQDQLDQIESEN 693 Query: 82 LNATNSYQSRKSEEQQILLMSVFSYGFIVLISAISIANIFNTVSTGISLRKREFAMLKSV 141 L N YQ+R+ +EQ + MSVF+YGFI LISAISIANIFNT+ST I+LR REFAML+S+ Sbjct: 694 LMIQNVYQNRERDEQMVTFMSVFTYGFITLISAISIANIFNTISTSIALRGREFAMLRSI 753 Query: 142 GMTPKGFAKMMNFENIFYGIKSLLFGLPVSFVVMYLIYRAFANKFSYGFTLPWMSILSVI 201 GMTPKGF KM+N+E+IFYG+K+LL+GLP+S VM L+Y + N F Y F +PW+S+L I Sbjct: 754 GMTPKGFNKMINYESIFYGLKALLYGLPISLGVMLLMYWSLQNTFQYSFAVPWISVLIAI 813 Query: 202 VAVFVIVGSAIVYSGAKAKKENIIDALKKESI 233 A+F+IV +A++YS K KK+NIID LK+E+I Sbjct: 814 AAIFIIVSAAMLYSIQKVKKQNIIDGLKQENI 845 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.134 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,173,947,058 Number of extensions: 43027314 Number of successful extensions: 169045 Number of sequences better than 1.0e-05: 195 Number of HSP's gapped: 169456 Number of HSP's successfully gapped: 198 Length of query: 233 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 102 Effective length of database: 1,826,543,238 Effective search space: 186307410276 Effective search space used: 186307410276 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)