BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0579.0028.p (335 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A4INF5.1 A4INF5_GEOTN Transcriptional regulator 362 3e-98 B4BJY7.1 B4BJY7_9BACI Transcriptional regulator, LacI family 362 3e-98 C5DAH8.1 C5DAH8_9BACI Transcriptional regulator, LacI family EC=... 326 2e-87 B4BM67.1 B4BM67_9BACI Transcriptional regulator, LacI family 317 7e-85 A4IPE3.1 A4IPE3_GEOTN Transcriptional regulator 316 2e-84 >A4INF5.1 A4INF5_GEOTN Transcriptional regulator Length = 337 Score = 362 bits (929), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 175/330 (53%), Positives = 230/330 (69%), Gaps = 1/330 (0%) Query: 3 KATIGDVAARAGVSKSTVSQFLNKRYQHMGQETRIKIEEAIEALDYRPNVLARGLKQKRT 62 K T+ DVA AGVSKSTVSQFLN+RY+HMG ETR +I+ AIE L YRPN +AR LKQKRT Sbjct: 3 KVTLADVAKEAGVSKSTVSQFLNQRYEHMGDETRERIKAAIEKLGYRPNYVARSLKQKRT 62 Query: 63 GAVGVIVANIMHRLSTEICRGIEDYCQEQNVNVILCNSDEDGEKEKKYAEMLQAKQVDGI 122 +G+I+ANIMHR+STE R IEDYC E ++ I+CN+D+D KE+KY E+L+A+QVDG+ Sbjct: 63 SMIGIIIANIMHRVSTEFSRAIEDYCHEHDMQAIICNADDDPAKERKYIEVLRARQVDGL 122 Query: 123 ILLPTGKNGALYESLAGQGYPILFMDRRVDNVKADTIVVNNREAVTQAVKHLASLGHRSI 182 +++PTG N LY+ + + YP++FMDR+VD + TIVVNN+ A +AV HL GH I Sbjct: 123 VIVPTGGNIELYQQMERENYPVVFMDRKVDGINVHTIVVNNKGAAYEAVSHLIEQGHTRI 182 Query: 183 ALATGPLTISTRTERTEGFRTAMSMLGLDYGSCNIINVEISSLKDRLRKRFEGQEPPTAL 242 + T PLT+S R ER G++ A+ G++ +I+ EI L RL + F + PTAL Sbjct: 183 GIVTPPLTVSPRIERMSGYKQALIDHGIEIRPEYMISDEIHRLTSRLEEMFSLPQKPTAL 242 Query: 243 IAGNDLVLLEALAFVKEQGLRVPEDLALVAFDNIPFAHLLTPTLTTINQPSLEMGRKAAE 302 +AGNDL E +AF+K+ +RVPEDLA+V FDNIPFA + TPT+TTI QP+ EMG+KAAE Sbjct: 243 LAGNDLSFFEVMAFIKQNRIRVPEDLAVVVFDNIPFAAISTPTITTIAQPAYEMGKKAAE 302 Query: 303 RLITRIRSXXXXXXXXXXXXXXLAVRESSG 332 L +I + L VRESSG Sbjct: 303 LLWKQIHN-ECDEAQLYTFFCQLIVRESSG 331 >B4BJY7.1 B4BJY7_9BACI Transcriptional regulator, LacI family Length = 337 Score = 362 bits (929), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 175/330 (53%), Positives = 230/330 (69%), Gaps = 1/330 (0%) Query: 3 KATIGDVAARAGVSKSTVSQFLNKRYQHMGQETRIKIEEAIEALDYRPNVLARGLKQKRT 62 K T+ DVA AGVSKSTVSQFLN+RY+HMG ETR +I+ AIE L YRPN +AR LKQKRT Sbjct: 3 KVTLADVAKEAGVSKSTVSQFLNQRYEHMGDETRERIKAAIEKLGYRPNYVARSLKQKRT 62 Query: 63 GAVGVIVANIMHRLSTEICRGIEDYCQEQNVNVILCNSDEDGEKEKKYAEMLQAKQVDGI 122 +G+I+ANIMHR+STE R IEDYC E ++ I+CN+D+D KE+KY E+L+A+QVDG+ Sbjct: 63 SMIGIIIANIMHRVSTEFSRAIEDYCHEHDMQAIICNADDDPAKERKYIEVLRARQVDGL 122 Query: 123 ILLPTGKNGALYESLAGQGYPILFMDRRVDNVKADTIVVNNREAVTQAVKHLASLGHRSI 182 +++PTG N LY+ + + YP++FMDR+VD + TIVVNN+ A +AV HL GH I Sbjct: 123 VIVPTGGNIELYQQMERENYPVVFMDRKVDGINVHTIVVNNKGAAYEAVSHLIEQGHTRI 182 Query: 183 ALATGPLTISTRTERTEGFRTAMSMLGLDYGSCNIINVEISSLKDRLRKRFEGQEPPTAL 242 + T PLT+S R ER G++ A+ G++ +I+ EI L RL + F + PTAL Sbjct: 183 GIVTPPLTVSPRIERMSGYKQALIDHGIEIRPEYMISDEIHRLTSRLEEMFSLPQKPTAL 242 Query: 243 IAGNDLVLLEALAFVKEQGLRVPEDLALVAFDNIPFAHLLTPTLTTINQPSLEMGRKAAE 302 +AGNDL E +AF+K+ +RVPEDLA+V FDNIPFA + TPT+TTI QP+ EMG+KAAE Sbjct: 243 LAGNDLSFFEVMAFIKQNRIRVPEDLAVVVFDNIPFAAISTPTITTIAQPAYEMGKKAAE 302 Query: 303 RLITRIRSXXXXXXXXXXXXXXLAVRESSG 332 L +I + L VRESSG Sbjct: 303 LLWKQIHN-ECDEAQLYTFFCQLIVRESSG 331 >C5DAH8.1 C5DAH8_9BACI Transcriptional regulator, LacI family EC=5.1.1.1 Length = 337 Score = 326 bits (836), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 154/308 (50%), Positives = 218/308 (70%), Gaps = 2/308 (0%) Query: 3 KATIGDVAARAGVSKSTVSQFLNKRYQHMGQETRIKIEEAIEALDYRPNVLARGLKQKRT 62 K T+ DVA A VSKSTVSQ+LNKRY++M +ETR +I AIE L Y+PN++AR LKQK T Sbjct: 3 KVTMADVAKLANVSKSTVSQYLNKRYEYMSEETRKRIARAIEELGYQPNIIARSLKQKTT 62 Query: 63 GAVGVIVANIMHRLSTEICRGIEDYCQEQNVNVILCNSDEDGEKEKKYAEMLQAKQVDGI 122 +GVIV NI+H L+T++ IE+ CQE+ +VI+CNSD+D EKEKKY EML AKQVDG+ Sbjct: 63 MTIGVIVFNILHMLTTQVLHAIEEACQERGFHVIVCNSDDDPEKEKKYIEMLLAKQVDGL 122 Query: 123 ILLPTGKNGALYESLAGQGYPILFMDRRVDNVKADTIVVNNREAVTQAVKHLASLGHRSI 182 I+ PTGKN +Y+ + + +P++F+DR V ++AD I+++N++A AV++ A G++ I Sbjct: 123 IVFPTGKNADIYQKMVKERFPLVFVDRMVPGIEADAILLDNKKAAALAVEYFADRGYQRI 182 Query: 183 ALATGPLT--ISTRTERTEGFRTAMSMLGLDYGSCNIINVEISSLKDRLRKRFEGQEPPT 240 + PL + R ER EGFR A+ GL I ++I S+++ L K F PP Sbjct: 183 GVVAPPLVSHVIPRVERIEGFRQALMEKGLPVVDDYFITMKIPSIQNGLAKLFASGRPPE 242 Query: 241 ALIAGNDLVLLEALAFVKEQGLRVPEDLALVAFDNIPFAHLLTPTLTTINQPSLEMGRKA 300 AL A NDL L+E L F+K+ ++VP++LA+++ D++PFAH+ TPTLTTI QP+ MG+KA Sbjct: 243 ALFAINDLTLMEVLYFIKDNHIKVPDELAIISIDDVPFAHVYTPTLTTIAQPTFAMGKKA 302 Query: 301 AERLITRI 308 AERL +I Sbjct: 303 AERLFLQI 310 >B4BM67.1 B4BM67_9BACI Transcriptional regulator, LacI family Length = 334 Score = 317 bits (813), Expect = 7e-85, Method: Compositional matrix adjust. Identities = 156/308 (50%), Positives = 213/308 (69%), Gaps = 2/308 (0%) Query: 3 KATIGDVAARAGVSKSTVSQFLNKRYQHMGQETRIKIEEAIEALDYRPNVLARGLKQKRT 62 K T+ DVA A VSKSTVSQ+LNKRY++M +ETR +I +AIE L Y+PNV+AR LKQK T Sbjct: 3 KVTMADVAKLANVSKSTVSQYLNKRYEYMSEETRKRIAQAIEELGYQPNVIARSLKQKTT 62 Query: 63 GAVGVIVANIMHRLSTEICRGIEDYCQEQNVNVILCNSDEDGEKEKKYAEMLQAKQVDGI 122 +GVIV N++H L+T++ IE+ CQ++ VI+CNS +D EKEKKY +ML AKQVDG+ Sbjct: 63 ATIGVIVFNMLHMLTTQVLHAIEEECQKREFQVIVCNSGDDPEKEKKYIDMLLAKQVDGL 122 Query: 123 ILLPTGKNGALYESLAGQGYPILFMDRRVDNVKADTIVVNNREAVTQAVKHLASLGHRSI 182 I+ PTGKN +Y L + +PI+F+DR V V+AD+++++N A AV +LA+ G+ I Sbjct: 123 IVFPTGKNEDVYHRLVAERFPIVFVDRMVPGVEADSVLLDNFGAAEMAVDYLAAHGYDRI 182 Query: 183 ALATGPLTIST--RTERTEGFRTAMSMLGLDYGSCNIINVEISSLKDRLRKRFEGQEPPT 240 A+ T PL R ER +GFR AM GL ++I E + L L+KRF E P Sbjct: 183 AIVTPPLVAHNVPRMERLQGFRMAMEKRGLKVDDRSVIAAEAAELPGELQKRFAAPERPN 242 Query: 241 ALIAGNDLVLLEALAFVKEQGLRVPEDLALVAFDNIPFAHLLTPTLTTINQPSLEMGRKA 300 AL A NDL L+ L FVKE G+RVP++L L++ D++PFA + TP LTTI QP+ MG+KA Sbjct: 243 ALFAINDLTLMGILRFVKETGIRVPDELGLISIDDVPFADIYTPMLTTIAQPTFAMGKKA 302 Query: 301 AERLITRI 308 AER+ ++ Sbjct: 303 AERVFEQM 310 >A4IPE3.1 A4IPE3_GEOTN Transcriptional regulator Length = 334 Score = 316 bits (810), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 155/308 (50%), Positives = 213/308 (69%), Gaps = 2/308 (0%) Query: 3 KATIGDVAARAGVSKSTVSQFLNKRYQHMGQETRIKIEEAIEALDYRPNVLARGLKQKRT 62 K T+ DVA A VSKSTVSQ+LNKRY++M +ETR +I +AIE L Y+PNV+AR LKQK T Sbjct: 3 KVTMADVAKLANVSKSTVSQYLNKRYEYMSEETRKRIAQAIEELGYQPNVIARSLKQKTT 62 Query: 63 GAVGVIVANIMHRLSTEICRGIEDYCQEQNVNVILCNSDEDGEKEKKYAEMLQAKQVDGI 122 +GVIV N++H L+T++ IE+ CQ++ VI+CNS +D EKE+KY +ML AKQVDG+ Sbjct: 63 ATIGVIVFNMLHMLTTQVLHAIEEECQKREFQVIVCNSGDDPEKERKYIDMLLAKQVDGL 122 Query: 123 ILLPTGKNGALYESLAGQGYPILFMDRRVDNVKADTIVVNNREAVTQAVKHLASLGHRSI 182 I+ PTGKN +Y L + +PI+F+DR V V+AD+++++N A AV +LA+ G+ I Sbjct: 123 IVFPTGKNEDVYHRLVAERFPIVFVDRMVPGVEADSVLLDNFGAAEMAVDYLAAHGYDRI 182 Query: 183 ALATGPLTIST--RTERTEGFRTAMSMLGLDYGSCNIINVEISSLKDRLRKRFEGQEPPT 240 A+ T PL R ER +GFR AM GL ++I E + L L+KRF E P Sbjct: 183 AIVTPPLVAHNVPRMERLQGFRMAMEKRGLKVDDRSVIAAEAAELPGELQKRFAAPERPN 242 Query: 241 ALIAGNDLVLLEALAFVKEQGLRVPEDLALVAFDNIPFAHLLTPTLTTINQPSLEMGRKA 300 AL A NDL L+ L FVKE G+RVP++L L++ D++PFA + TP LTTI QP+ MG+KA Sbjct: 243 ALFAINDLTLMGILRFVKETGIRVPDELGLISIDDVPFADIYTPMLTTIAQPTFAMGKKA 302 Query: 301 AERLITRI 308 AER+ ++ Sbjct: 303 AERVFEQM 310 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.134 0.368 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,701,846,219 Number of extensions: 66946224 Number of successful extensions: 227362 Number of sequences better than 1.0e-05: 8935 Number of HSP's gapped: 208593 Number of HSP's successfully gapped: 8956 Length of query: 335 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 199 Effective length of database: 1,779,438,163 Effective search space: 354108194437 Effective search space used: 354108194437 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)