BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0579.0027.p (293 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q9I1L3.1 Q9I1L3_PSEAE KguE 115 5e-24 B7V963.1 B7V963_PSEA8 Putative putative epimerase 115 5e-24 A3L971.1 A3L971_PSEAE Putative uncharacterized protein 115 5e-24 A1VMC3.1 A1VMC3_POLNA Xylose isomerase domain protein TIM barrel 115 6e-24 C0XN23.1 C0XN23_LACHI Sugar phosphatase isomerase/epimerase 112 5e-23 >Q9I1L3.1 Q9I1L3_PSEAE KguE Length = 260 Score = 115 bits (288), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 87/244 (35%), Positives = 114/244 (46%), Gaps = 40/244 (16%) Query: 34 AGADGIEIRRELF--PPGKLPLAECREANRNSGLRCIYSVPMELWDEAGRLNETQLSEVL 91 AGA +E+R ELF PP L A + GL C++S P+ELW E G+LN +L L Sbjct: 33 AGAQRVELREELFAGPPDTEALTA---AIQLQGLECVFSSPLELWREDGQLN-PELEPTL 88 Query: 92 EEAGILRPEMVKVSLGHFIAAAGGETEEGVTKVAGVRKASDDQVSRNSEERLTRLGGLLQ 151 A +KVSLG + L LG L Sbjct: 89 RRAEACGAGWLKVSLGLL----------------------------PEQPDLAALGRRL- 119 Query: 152 QYRALHGPLTLLVENDQTPHGGDAGNLKAFFQAVERSGFGGVRMTFDTGNWIYAGEEPMR 211 A HG L LLVENDQTP GG L+ FF+ ER + MTFD GNW + + Sbjct: 120 ---ARHG-LQLLVENDQTPQGGRIEVLERFFRLAERQQLD-LAMTFDIGNWRWQEQAADE 174 Query: 212 AALDLAPYTAYIHCKHVVYSENNTLQTVPIPGEEDALWRELLAYLPDRASRAIEFTIPGP 271 AAL L Y Y+HCK V+ + + L VP + W+ LL + P+ +RAIE+ + G Sbjct: 175 AALRLGRYVGYVHCKAVIRNRDGKLVAVPPSAADLQYWQRLLQHFPEGVARAIEYPLQGD 234 Query: 272 ESLS 275 + LS Sbjct: 235 DLLS 238 >B7V963.1 B7V963_PSEA8 Putative putative epimerase Length = 260 Score = 115 bits (288), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 87/244 (35%), Positives = 114/244 (46%), Gaps = 40/244 (16%) Query: 34 AGADGIEIRRELF--PPGKLPLAECREANRNSGLRCIYSVPMELWDEAGRLNETQLSEVL 91 AGA +E+R ELF PP L A + GL C++S P+ELW E G+LN +L L Sbjct: 33 AGAQRVELREELFAGPPDTEALTA---AIQLQGLECVFSSPLELWREDGQLN-PELEPTL 88 Query: 92 EEAGILRPEMVKVSLGHFIAAAGGETEEGVTKVAGVRKASDDQVSRNSEERLTRLGGLLQ 151 A +KVSLG + L LG L Sbjct: 89 RRAEACGAGWLKVSLGLL----------------------------PEQPDLAALGRRL- 119 Query: 152 QYRALHGPLTLLVENDQTPHGGDAGNLKAFFQAVERSGFGGVRMTFDTGNWIYAGEEPMR 211 A HG L LLVENDQTP GG L+ FF+ ER + MTFD GNW + + Sbjct: 120 ---ARHG-LQLLVENDQTPQGGRIEVLERFFRLAERQQLD-LAMTFDIGNWRWQEQAADE 174 Query: 212 AALDLAPYTAYIHCKHVVYSENNTLQTVPIPGEEDALWRELLAYLPDRASRAIEFTIPGP 271 AAL L Y Y+HCK V+ + + L VP + W+ LL + P+ +RAIE+ + G Sbjct: 175 AALRLGRYVGYVHCKAVIRNRDGKLVAVPPSAADLQYWQRLLQHFPEGVARAIEYPLQGD 234 Query: 272 ESLS 275 + LS Sbjct: 235 DLLS 238 >A3L971.1 A3L971_PSEAE Putative uncharacterized protein Length = 260 Score = 115 bits (288), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 87/244 (35%), Positives = 114/244 (46%), Gaps = 40/244 (16%) Query: 34 AGADGIEIRRELF--PPGKLPLAECREANRNSGLRCIYSVPMELWDEAGRLNETQLSEVL 91 AGA +E+R ELF PP L A + GL C++S P+ELW E G+LN +L L Sbjct: 33 AGAQRVELREELFAGPPDTEALTA---AIQLQGLECVFSSPLELWREDGQLN-PELEPTL 88 Query: 92 EEAGILRPEMVKVSLGHFIAAAGGETEEGVTKVAGVRKASDDQVSRNSEERLTRLGGLLQ 151 A +KVSLG + L LG L Sbjct: 89 RRAEACGAGWLKVSLGLL----------------------------PEQPDLAALGRRL- 119 Query: 152 QYRALHGPLTLLVENDQTPHGGDAGNLKAFFQAVERSGFGGVRMTFDTGNWIYAGEEPMR 211 A HG L LLVENDQTP GG L+ FF+ ER + MTFD GNW + + Sbjct: 120 ---ARHG-LQLLVENDQTPQGGRIEVLERFFRLAERQQLD-LAMTFDIGNWRWQEQAADE 174 Query: 212 AALDLAPYTAYIHCKHVVYSENNTLQTVPIPGEEDALWRELLAYLPDRASRAIEFTIPGP 271 AAL L Y Y+HCK V+ + + L VP + W+ LL + P+ +RAIE+ + G Sbjct: 175 AALRLGRYVGYVHCKAVIRNRDGKLVAVPPSAADLQYWQRLLQHFPEGVARAIEYPLQGD 234 Query: 272 ESLS 275 + LS Sbjct: 235 DLLS 238 >A1VMC3.1 A1VMC3_POLNA Xylose isomerase domain protein TIM barrel Length = 271 Score = 115 bits (287), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 89/275 (32%), Positives = 123/275 (44%), Gaps = 41/275 (14%) Query: 1 MKGDDSMKAVFVPTSAFGNTPGLQH--EW-TQTVHAAGADGIEIRRELFPPGKLPLAECR 57 + G + + + +AFG +H W + H AGADG+E+R EL L Sbjct: 5 VSGAAAAPPILISLTAFGAAEVRRHGQRWFARLCHEAGADGVEVRSELLVDAARELPAIA 64 Query: 58 EANRNSGLRCIYSVPMELWDEAGRLNETQLSEVLEEAGILRPEMVKVSLGHFIAAAGGET 117 E R++GLR +YS LW G L+ L L A IL +K+++G F A Sbjct: 65 ETVRDTGLRVVYSSADYLWAADGALDMAALQRALNAAKILGAPRLKMAIGGFGA------ 118 Query: 118 EEGVTKVAGVRKASDDQVSRNSEERLTRLGGLLQQYRALHGPLTLLVENDQTPHGGDAGN 177 +S L L LQ + + L++ENDQTP G Sbjct: 119 --------------------SSHASLMALRDCLQAAK-----IELVIENDQTPAAGTLPA 153 Query: 178 LKAFFQAVERSG-FGGVRMTFDTGNWIYAGEEPMRAALDLAPYTAYIHCKHVVYSENNTL 236 L+ FF G F G MTFD GNW ++GE P++AA LAP Y+HCK V + Sbjct: 154 LQDFFDTANDLGIFLG--MTFDMGNWHWSGECPLQAAGALAPQVRYVHCKGV---QRQPQ 208 Query: 237 QTVPIP-GEEDALWRELLAYLPDRASRAIEFTIPG 270 + V +P E A WR +L LP AIE+ + G Sbjct: 209 RWVAVPLAESSAPWRAVLRALPADVPWAIEYPLIG 243 >C0XN23.1 C0XN23_LACHI Sugar phosphatase isomerase/epimerase Length = 249 Score = 112 bits (279), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 77/262 (29%), Positives = 120/262 (45%), Gaps = 40/262 (15%) Query: 24 QHEWTQTVHAAGADGIEIRRELFPPGKLPLAECREANRNSGLRCIYSVPMELWDEAGRLN 83 Q E GADGIE+RRE F + A+ E + GL YSVP EL+ E G+ N Sbjct: 20 QAELVDRTAKLGADGIEVRREYFTDLETETADVGERAKAKGLMVTYSVPDELFFEDGQFN 79 Query: 84 ETQLSEVLEEAGILRPEMVKVSLGHFIAAAGGETEEGVTKVAGVRKASDDQVSRNSEERL 143 ++L+ +EA ++ +K + G F D+ N ++ L Sbjct: 80 -SKLTTYFDEAKVMGASKIKFNTGRF-----------------------DRYRGNLKQDL 115 Query: 144 TRLGGLLQQYRALHGPLTLL---VENDQTPHGGDAGNLKAFFQAVERSGFGGVRMTFDTG 200 +RL PL + VENDQT G+ +KAF +V + + +D G Sbjct: 116 SRL------------PLNKIEMNVENDQTEASGNVAPIKAFLDSVRKIDLNRIGYVYDLG 163 Query: 201 NWIYAGEEPMRAALDLAPYTAYIHCKHVVYSENNTLQTVPIPGEEDALWRELLAYLPDRA 260 NW + G + +++A LA YT YIH K+ V S++ L+T W+ +L LP+ Sbjct: 164 NWAFTGNDAIQSAKALAAYTNYIHLKNTV-SDHGKLKTSSDLNTGIYDWKRILNVLPNDV 222 Query: 261 SRAIEFTIPGPESLSGYLMMLR 282 A+EF I + ++ + +LR Sbjct: 223 PIALEFPIATDKKIAAQMAILR 244 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.135 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,885,313,597 Number of extensions: 80439096 Number of successful extensions: 254966 Number of sequences better than 1.0e-05: 93 Number of HSP's gapped: 254823 Number of HSP's successfully gapped: 104 Length of query: 293 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 159 Effective length of database: 1,798,280,193 Effective search space: 285926550687 Effective search space used: 285926550687 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 130 (54.7 bits)