BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0579.0025.p (167 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A4INF2.1 A4INF2_GEOTN 2-keto-3-deoxygluconate kinase-like protein 196 6e-49 B4BJZ0.1 B4BJZ0_9BACI PfkB domain protein 196 6e-49 Q97M05.1 Q97M05_CLOAB 2-keto-3-deoxygluconate kinase (Gene kdgK) 186 5e-46 A8FI30.1 A8FI30_BACP2 2-dehydro-3-deoxygluconokinase EC=2.7.1.45 184 3e-45 P50845.1 KDGK_BACSU 2-dehydro-3-deoxygluconokinase EC=2.7.1.45 183 5e-45 >A4INF2.1 A4INF2_GEOTN 2-keto-3-deoxygluconate kinase-like protein Length = 316 Score = 196 bits (498), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 93/164 (56%), Positives = 122/164 (74%), Gaps = 1/164 (0%) Query: 1 MKGAGRTVSFDPNLRPSLWSSKEEMREVINDLAYRADWVLPGIEEGEFLTGSTDPKEIAE 60 M+ G+T+SFDPNLRPSLW S+EEM VIN++A +D LPG+ EGE LTG DP++IA+ Sbjct: 153 MRKEGKTISFDPNLRPSLWKSREEMIRVINEVALESDCFLPGVHEGELLTGCADPRDIAD 212 Query: 61 FYLHRGVSLVAVKLGPEGAYFRTPNEEGTVQGFKXXXXXXDTVGAGDGFATGLIEGLLRG 120 FYL +GV LV VKLG +GA+++ N+EG V F DTVGAGDGFA G+I GLL G Sbjct: 213 FYLEKGVRLVVVKLGDKGAFYKCANDEGYVPSFS-VLKVVDTVGAGDGFAVGVISGLLEG 271 Query: 121 LSITEAVRQGNAIGSIAVQSAGDHDGYPTKEELKAYLHYHLTGV 164 L I EAV +GNAIG++AVQS GD DGYPT+++L+ +++ G+ Sbjct: 272 LPIREAVLRGNAIGALAVQSEGDSDGYPTRQQLEQFINIREEGL 315 >B4BJZ0.1 B4BJZ0_9BACI PfkB domain protein Length = 316 Score = 196 bits (498), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 93/164 (56%), Positives = 122/164 (74%), Gaps = 1/164 (0%) Query: 1 MKGAGRTVSFDPNLRPSLWSSKEEMREVINDLAYRADWVLPGIEEGEFLTGSTDPKEIAE 60 M+ G+T+SFDPNLRPSLW S+EEM VIN++A +D LPG+ EGE LTG DP++IA+ Sbjct: 153 MRKEGKTISFDPNLRPSLWKSREEMIRVINEVALESDCFLPGVHEGELLTGCADPRDIAD 212 Query: 61 FYLHRGVSLVAVKLGPEGAYFRTPNEEGTVQGFKXXXXXXDTVGAGDGFATGLIEGLLRG 120 FYL +GV LV VKLG +GA+++ N+EG V F DTVGAGDGFA G+I GLL G Sbjct: 213 FYLEKGVRLVVVKLGDKGAFYKCANDEGYVPSFS-VLKVVDTVGAGDGFAVGVISGLLEG 271 Query: 121 LSITEAVRQGNAIGSIAVQSAGDHDGYPTKEELKAYLHYHLTGV 164 L I EAV +GNAIG++AVQS GD DGYPT+++L+ +++ G+ Sbjct: 272 LPIREAVLRGNAIGALAVQSEGDSDGYPTRQQLEQFINIREEGL 315 >Q97M05.1 Q97M05_CLOAB 2-keto-3-deoxygluconate kinase (Gene kdgK) Length = 315 Score = 186 bits (473), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 88/151 (58%), Positives = 116/151 (76%), Gaps = 1/151 (0%) Query: 7 TVSFDPNLRPSLWSSKEEMREVINDLAYRADWVLPGIEEGEFLTGSTDPKEIAEFYLHRG 66 T +FD NLRP LW+SKE+M IND+A+++D +LPGI EG L GS P+EIA+FYL++G Sbjct: 164 TTTFDTNLRPQLWNSKEDMISTINDIAFKSDILLPGINEGLVLMGSDKPEEIADFYLNKG 223 Query: 67 VSLVAVKLGPEGAYFRTPNEEGTVQGFKXXXXXXDTVGAGDGFATGLIEGLLRGLSITEA 126 V LV +KLG +GAY +T +E TV+GFK DTVGAGDGFA G+I +L G+S+ EA Sbjct: 224 VKLVIIKLGSKGAYVKTKDEAYTVEGFK-VKHVVDTVGAGDGFAVGVISAILEGISVKEA 282 Query: 127 VRQGNAIGSIAVQSAGDHDGYPTKEELKAYL 157 VR+GNA+G++AV S GD+DGYPT EEL+ +L Sbjct: 283 VRRGNAVGALAVMSEGDNDGYPTHEELEKFL 313 >A8FI30.1 A8FI30_BACP2 2-dehydro-3-deoxygluconokinase EC=2.7.1.45 Length = 338 Score = 184 bits (466), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 85/157 (54%), Positives = 115/157 (73%), Gaps = 1/157 (0%) Query: 1 MKGAGRTVSFDPNLRPSLWSSKEEMREVINDLAYRADWVLPGIEEGEFLTGSTDPKEIAE 60 MK AG+T+SFDPNLR LW +E+M +N +AY+ DW PG+ EG+ LTG +P+EIA+ Sbjct: 157 MKEAGKTISFDPNLRLQLWEEEEDMIHTVNQIAYQVDWFFPGLAEGQRLTGCHEPEEIAD 216 Query: 61 FYLHRGVSLVAVKLGPEGAYFRTPNEEGTVQGFKXXXXXXDTVGAGDGFATGLIEGLLRG 120 YL +GV LV +KLG EGAY+++ +G V GF DTVGAGDGFA G+I GLL G Sbjct: 217 VYLQKGVKLVVIKLGAEGAYYKSAANQGMVSGF-YVPNVVDTVGAGDGFAVGVISGLLDG 275 Query: 121 LSITEAVRQGNAIGSIAVQSAGDHDGYPTKEELKAYL 157 LS ++VR+GNA+G++AV S GD DG PT+EEL++++ Sbjct: 276 LSCEKSVRRGNAVGALAVMSPGDKDGLPTREELQSFI 312 >P50845.1 KDGK_BACSU 2-dehydro-3-deoxygluconokinase EC=2.7.1.45 Length = 324 Score = 183 bits (464), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 89/162 (54%), Positives = 115/162 (70%), Gaps = 1/162 (0%) Query: 1 MKGAGRTVSFDPNLRPSLWSSKEEMREVINDLAYRADWVLPGIEEGEFLTGSTDPKEIAE 60 M+ AG+T+SFDPN+RPSLW + M INDLA ADW PGI EGE LTG P+ IA+ Sbjct: 156 MRNAGKTISFDPNVRPSLWPDQATMVHTINDLAGLADWFFPGIAEGELLTGEKTPEGIAD 215 Query: 61 FYLHRGVSLVAVKLGPEGAYFRTPNEEGTVQGFKXXXXXXDTVGAGDGFATGLIEGLLRG 120 +YL +G S VA+KLG EGAYF+T EG ++G + DTVGAGDGFA G+I G+L G Sbjct: 216 YYLKKGASFVAIKLGKEGAYFKTGTSEGFLEGCR-VDRVVDTVGAGDGFAVGVISGILDG 274 Query: 121 LSITEAVRQGNAIGSIAVQSAGDHDGYPTKEELKAYLHYHLT 162 LS +AV++GNAIG++ VQ+ GD DG PT+E+L ++L T Sbjct: 275 LSYKDAVQRGNAIGALQVQAPGDMDGLPTREKLASFLSAQRT 316 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.315 0.137 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,067,123,051 Number of extensions: 44155729 Number of successful extensions: 89575 Number of sequences better than 1.0e-05: 1850 Number of HSP's gapped: 89031 Number of HSP's successfully gapped: 1850 Length of query: 167 Length of database: 3,060,696,203 Length adjustment: 125 Effective length of query: 42 Effective length of database: 1,883,069,328 Effective search space: 79088911776 Effective search space used: 79088911776 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 126 (53.1 bits)