BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0579.0024.p (433 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C4D7M1.1 C4D7M1_9SPHI Sugar phosphate permease 613 e-173 A4INF3.1 A4INF3_GEOTN 2-ketogluconate transporter 592 e-167 B4BJY9.1 B4BJY9_9BACI Major facilitator superfamily MFS_1 592 e-167 A6M2C9.1 A6M2C9_CLOB8 Major facilitator superfamily MFS_1 582 e-164 C1U308.1 C1U308_9SPHI Sugar phosphate permease 561 e-158 >C4D7M1.1 C4D7M1_9SPHI Sugar phosphate permease Length = 426 Score = 613 bits (1581), Expect = e-173, Method: Compositional matrix adjust. Identities = 300/420 (71%), Positives = 345/420 (82%), Gaps = 2/420 (0%) Query: 12 SRWLRLMPIVFVTYSLAYLDRANYSFGAAAGMAKDLHISAGMSSXXXXXXXXXXXXXQVP 71 SRW RL+PI F+TYSLAYLDRAN+ FGAA+GMA DLHI+ MSS QVP Sbjct: 9 SRWYRLLPIAFITYSLAYLDRANFGFGAASGMAADLHITPAMSSLLGSLFFLGYFFFQVP 68 Query: 72 GAHYAENKSAKKLVFGSLILWGLLATATGIVHNVHFLIIIRFCLGVVESAVMPAMLVFLS 131 GA YAE KSAK L+F SLILWG LA ATGI+ NV+ LIIIRF LGVVESAVMP+ML+FLS Sbjct: 69 GAVYAEKKSAKSLIFWSLILWGGLAMATGIISNVNLLIIIRFMLGVVESAVMPSMLLFLS 128 Query: 132 HWFTKKERSRANTFLILGNPVTVLWMSIVSGYLVSAVGWRWMFIIEGLPPIIWAFFWWKL 191 WFTK ERS+ANTFLILGNP T+LWMS++SGYLV AVGWRWMFI+EGLP IIWAFFWW+L Sbjct: 129 RWFTKAERSQANTFLILGNPATILWMSVLSGYLVQAVGWRWMFILEGLPAIIWAFFWWRL 188 Query: 192 VNDKPSETNWLTSQEKKELESALHEEQKGLKPVKNYGEAFRSPLVIRLCLQYFFWSIGVY 251 V++ P + WLT EKK L L EQ+G+KPVKNY +AF+S +VI L LQY WSIGVY Sbjct: 189 VDNTPEDATWLTVDEKKALVDQLQREQQGIKPVKNYAQAFKSRIVILLSLQYALWSIGVY 248 Query: 252 GFVMWLPSIIKAAPDMSMVATGWLTSVPYVLAVIGMLTASYFSDKTQNRKAFVWPFLMVG 311 GFVMWLPSI+ AAP+M++V TGWL+S+PYVLA+IGML ASYFSDKT NRK+FVWPFL++G Sbjct: 249 GFVMWLPSILNAAPNMTIVKTGWLSSIPYVLAIIGMLGASYFSDKTLNRKSFVWPFLLLG 308 Query: 312 AVAFYASYLLGADHFWISFILLIIAGGAMYAPYGPFFAIMPEILPRNVSGGAMALINSMG 371 A+AFY SYL GADHFWISF+LLIIAGGAMYAPYGPFFAI+PE+LPRNV+GGAMALINS G Sbjct: 309 AIAFYGSYLAGADHFWISFVLLIIAGGAMYAPYGPFFAIIPELLPRNVAGGAMALINSFG 368 Query: 372 ALGSFAGSYIVGYLNSFTGGFGASYIFMAGSLLLSAILTMTVGRSRKPAESSTEGKLEVS 431 ALGSF G+YIVGYLN TGGFG SY+FMAGSLLLSAI+T+ KPA + + VS Sbjct: 369 ALGSFIGAYIVGYLNGSTGGFGTSYLFMAGSLLLSAIITLIA--LDKPATTQENSPVTVS 426 >A4INF3.1 A4INF3_GEOTN 2-ketogluconate transporter Length = 434 Score = 592 bits (1527), Expect = e-167, Method: Compositional matrix adjust. Identities = 297/406 (73%), Positives = 343/406 (84%) Query: 6 KGGFVASRWLRLMPIVFVTYSLAYLDRANYSFGAAAGMAKDLHISAGMSSXXXXXXXXXX 65 KG SRW RL+P+VF+TYSLAYLDRANY FGAA G+A+DL+ISA SS Sbjct: 2 KGTLAKSRWYRLIPVVFITYSLAYLDRANYGFGAAGGLAEDLNISAATSSLLGSLFFLGY 61 Query: 66 XXXQVPGAHYAENKSAKKLVFGSLILWGLLATATGIVHNVHFLIIIRFCLGVVESAVMPA 125 Q+PGAHYAE KSAKKL+F SLILWG LA+ATG+V ++H+L++IRF LGVVESAVMPA Sbjct: 62 FLFQIPGAHYAEKKSAKKLIFWSLILWGGLASATGLVSDIHWLMVIRFLLGVVESAVMPA 121 Query: 126 MLVFLSHWFTKKERSRANTFLILGNPVTVLWMSIVSGYLVSAVGWRWMFIIEGLPPIIWA 185 MLVFLSHWFTK+ERSRANTFLILGNPVTVLWMSIVSGYL+ + GWRWMF+IEG+P IIWA Sbjct: 122 MLVFLSHWFTKEERSRANTFLILGNPVTVLWMSIVSGYLIESFGWRWMFVIEGVPAIIWA 181 Query: 186 FFWWKLVNDKPSETNWLTSQEKKELESALHEEQKGLKPVKNYGEAFRSPLVIRLCLQYFF 245 F WWKLV D+P WLT +EK++L+ L +EQ+GLKPVKNY EAFRS +VI L LQY Sbjct: 182 FIWWKLVEDEPKMAKWLTGEEKEQLQKQLEQEQRGLKPVKNYREAFRSKIVILLSLQYAL 241 Query: 246 WSIGVYGFVMWLPSIIKAAPDMSMVATGWLTSVPYVLAVIGMLTASYFSDKTQNRKAFVW 305 WSIGVYGFVMWLPSIIKAAP M +V TGWL+SVPY+ AVI M+ +SYFSDKT NR FVW Sbjct: 242 WSIGVYGFVMWLPSIIKAAPHMDIVTTGWLSSVPYIFAVIFMIVSSYFSDKTLNRSGFVW 301 Query: 306 PFLMVGAVAFYASYLLGADHFWISFILLIIAGGAMYAPYGPFFAIMPEILPRNVSGGAMA 365 P L++GA+AFYASY +G +HFWISFILL++AG AMYAPYGPFFAI+PEILPRNV+GGAMA Sbjct: 302 PSLLIGAIAFYASYAIGTNHFWISFILLVVAGAAMYAPYGPFFAIIPEILPRNVAGGAMA 361 Query: 366 LINSMGALGSFAGSYIVGYLNSFTGGFGASYIFMAGSLLLSAILTM 411 LINSMGALGSFAGSY+VGYLN TGGFGASYIFMA SLLL++ LT+ Sbjct: 362 LINSMGALGSFAGSYVVGYLNGVTGGFGASYIFMAASLLLASWLTI 407 >B4BJY9.1 B4BJY9_9BACI Major facilitator superfamily MFS_1 Length = 434 Score = 592 bits (1527), Expect = e-167, Method: Compositional matrix adjust. Identities = 297/406 (73%), Positives = 343/406 (84%) Query: 6 KGGFVASRWLRLMPIVFVTYSLAYLDRANYSFGAAAGMAKDLHISAGMSSXXXXXXXXXX 65 KG SRW RL+P+VF+TYSLAYLDRANY FGAA G+A+DL+ISA SS Sbjct: 2 KGTLAKSRWYRLIPVVFITYSLAYLDRANYGFGAAGGLAEDLNISAATSSLLGSLFFLGY 61 Query: 66 XXXQVPGAHYAENKSAKKLVFGSLILWGLLATATGIVHNVHFLIIIRFCLGVVESAVMPA 125 Q+PGAHYAE KSAKKL+F SLILWG LA+ATG+V ++H+L++IRF LGVVESAVMPA Sbjct: 62 FLFQIPGAHYAEKKSAKKLIFWSLILWGGLASATGLVSDIHWLMVIRFLLGVVESAVMPA 121 Query: 126 MLVFLSHWFTKKERSRANTFLILGNPVTVLWMSIVSGYLVSAVGWRWMFIIEGLPPIIWA 185 MLVFLSHWFTK+ERSRANTFLILGNPVTVLWMSIVSGYL+ + GWRWMF+IEG+P IIWA Sbjct: 122 MLVFLSHWFTKEERSRANTFLILGNPVTVLWMSIVSGYLIESFGWRWMFVIEGVPAIIWA 181 Query: 186 FFWWKLVNDKPSETNWLTSQEKKELESALHEEQKGLKPVKNYGEAFRSPLVIRLCLQYFF 245 F WWKLV D+P WLT +EK++L+ L +EQ+GLKPVKNY EAFRS +VI L LQY Sbjct: 182 FIWWKLVEDEPKMAKWLTGEEKEQLQKQLEQEQRGLKPVKNYREAFRSKIVILLSLQYAL 241 Query: 246 WSIGVYGFVMWLPSIIKAAPDMSMVATGWLTSVPYVLAVIGMLTASYFSDKTQNRKAFVW 305 WSIGVYGFVMWLPSIIKAAP M +V TGWL+SVPY+ AVI M+ +SYFSDKT NR FVW Sbjct: 242 WSIGVYGFVMWLPSIIKAAPHMDIVTTGWLSSVPYIFAVIFMIVSSYFSDKTLNRSGFVW 301 Query: 306 PFLMVGAVAFYASYLLGADHFWISFILLIIAGGAMYAPYGPFFAIMPEILPRNVSGGAMA 365 P L++GA+AFYASY +G +HFWISFILL++AG AMYAPYGPFFAI+PEILPRNV+GGAMA Sbjct: 302 PSLLIGAIAFYASYAIGTNHFWISFILLVVAGAAMYAPYGPFFAIIPEILPRNVAGGAMA 361 Query: 366 LINSMGALGSFAGSYIVGYLNSFTGGFGASYIFMAGSLLLSAILTM 411 LINSMGALGSFAGSY+VGYLN TGGFGASYIFMA SLLL++ LT+ Sbjct: 362 LINSMGALGSFAGSYVVGYLNGVTGGFGASYIFMAASLLLASWLTI 407 >A6M2C9.1 A6M2C9_CLOB8 Major facilitator superfamily MFS_1 Length = 428 Score = 582 bits (1500), Expect = e-164, Method: Compositional matrix adjust. Identities = 277/421 (65%), Positives = 338/421 (80%), Gaps = 2/421 (0%) Query: 11 ASRWLRLMPIVFVTYSLAYLDRANYSFGAAAGMAKDLHISAGMSSXXXXXXXXXXXXXQV 70 + RW RL+P+ F+TYSLAYLDRANYSFG A GM + LHI+A ++S QV Sbjct: 10 SKRWKRLIPVAFITYSLAYLDRANYSFGVAGGMGESLHITASIASLLSALFFLGYFFFQV 69 Query: 71 PGAHYAENKSAKKLVFGSLILWGLLATATGIVHNVHFLIIIRFCLGVVESAVMPAMLVFL 130 P A +AE KSAKKLVF SLI WG+LA + G++ NV L++ RF LG++ESAVMPAML+FL Sbjct: 70 PAAWFAEKKSAKKLVFWSLIFWGILAASNGLITNVKVLMVTRFILGIIESAVMPAMLIFL 129 Query: 131 SHWFTKKERSRANTFLILGNPVTVLWMSIVSGYLVSAVGWRWMFIIEGLPPIIWAFFWWK 190 S+WFTKKERSRANTFLILGNP TVLWMSIVSGYLV++VGWRWMFI+EG+PPIIWAFFW K Sbjct: 130 SNWFTKKERSRANTFLILGNPATVLWMSIVSGYLVNSVGWRWMFILEGIPPIIWAFFWLK 189 Query: 191 LVNDKPSETNWLTSQEKKELESALHEEQKGLKPVKNYGEAFRSPLVIRLCLQYFFWSIGV 250 L ++KP E WLT QEKK++E + EEQKG+KPVKNY EAF+SP VI L QYFFWSIGV Sbjct: 190 LSDNKPKEAKWLTEQEKKDIEIVMEEEQKGIKPVKNYREAFKSPKVIILSFQYFFWSIGV 249 Query: 251 YGFVMWLPSIIKAAPDMSMVATGWLTSVPYVLAVIGMLTASYFSDKTQNRKAFVWPFLMV 310 YGFVMWLPSI+KA+P + +V+ GWL+S+PY LAV+ ML +SY+SD+T NRK FVW +L++ Sbjct: 250 YGFVMWLPSILKASPQIGIVSAGWLSSLPYALAVVLMLVSSYYSDRTGNRKTFVWVYLLI 309 Query: 311 GAVAFYASYLLGADHFWISFILLIIAGGAMYAPYGPFFAIMPEILPRNVSGGAMALINSM 370 G +AF+ SYL+G +FW+S+ILL+IAGG MYAPYGPFFAI+ EILP+NVSGGA ALINSM Sbjct: 310 GTIAFFGSYLIGTSNFWLSYILLVIAGGVMYAPYGPFFAIITEILPKNVSGGASALINSM 369 Query: 371 GALGSFAGSYIVGYLNSFTGGFGASYIFMAGSLLLSAILTMTVGRSRKPAESSTEGKLEV 430 GALGSF GSY+VGYLN TG ASY+FM+GSLLL+ L + V S+ A + E +EV Sbjct: 370 GALGSFVGSYVVGYLNGITGSVDASYVFMSGSLLLAVFLMIAVKTSK--ASNKIENTVEV 427 Query: 431 S 431 S Sbjct: 428 S 428 >C1U308.1 C1U308_9SPHI Sugar phosphate permease Length = 423 Score = 561 bits (1447), Expect = e-158, Method: Compositional matrix adjust. Identities = 266/413 (64%), Positives = 327/413 (79%) Query: 13 RWLRLMPIVFVTYSLAYLDRANYSFGAAAGMAKDLHISAGMSSXXXXXXXXXXXXXQVPG 72 RW R++P+VFVTYSLAYLDRAN+ F A GMA+DL I+ S+ Q+PG Sbjct: 9 RWYRIIPVVFVTYSLAYLDRANFGFAVAGGMAEDLRITPNTSTLLSSLFFLGYFFFQIPG 68 Query: 73 AHYAENKSAKKLVFGSLILWGLLATATGIVHNVHFLIIIRFCLGVVESAVMPAMLVFLSH 132 AHYA ++AKKL+F SLILWG LA ATG+V++ LI+IRF LGVVESAVMPAML+ LS Sbjct: 69 AHYAATRTAKKLIFISLILWGGLAAATGMVNDTTVLIVIRFMLGVVESAVMPAMLILLSQ 128 Query: 133 WFTKKERSRANTFLILGNPVTVLWMSIVSGYLVSAVGWRWMFIIEGLPPIIWAFFWWKLV 192 WFTK+ERSRANTFLILGNPVTVLWMS++SGYL+ ++GWRWMFII+GLP I+WAF WWKL+ Sbjct: 129 WFTKEERSRANTFLILGNPVTVLWMSVLSGYLIDSMGWRWMFIIQGLPGILWAFIWWKLI 188 Query: 193 NDKPSETNWLTSQEKKELESALHEEQKGLKPVKNYGEAFRSPLVIRLCLQYFFWSIGVYG 252 +++P + +WLT +EK +E L EQ G+KPVKNY EAF+S VI LCLQY WS+GVYG Sbjct: 189 DERPMDADWLTHEEKLAVEEKLKAEQAGIKPVKNYAEAFKSTKVILLCLQYLLWSVGVYG 248 Query: 253 FVMWLPSIIKAAPDMSMVATGWLTSVPYVLAVIGMLTASYFSDKTQNRKAFVWPFLMVGA 312 FVMWLPSIIKAAP+M MV TGWL+SVPYVLAVIGML ASYFSDKT NRK FVWPFL+V A Sbjct: 249 FVMWLPSIIKAAPNMDMVTTGWLSSVPYVLAVIGMLAASYFSDKTGNRKIFVWPFLLVAA 308 Query: 313 VAFYASYLLGADHFWISFILLIIAGGAMYAPYGPFFAIMPEILPRNVSGGAMALINSMGA 372 V Y + +G + FW+++ LL++AGGA+Y PYGPFFA + EILP+NV GGA+ LINS+GA Sbjct: 309 VCLYGAVWIGTEQFWVAYALLVVAGGALYTPYGPFFAAIAEILPKNVIGGAIGLINSLGA 368 Query: 373 LGSFAGSYIVGYLNSFTGGFGASYIFMAGSLLLSAILTMTVGRSRKPAESSTE 425 LGSFAGSY+VGYLNS TG F ASYI M+ +L+L+ ++T+ V + + A E Sbjct: 369 LGSFAGSYLVGYLNSETGNFNASYILMSVALVLATVITIAVIPAPQIARPVAE 421 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.325 0.138 0.435 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,580,847,830 Number of extensions: 107950760 Number of successful extensions: 511532 Number of sequences better than 1.0e-05: 6313 Number of HSP's gapped: 500651 Number of HSP's successfully gapped: 6322 Length of query: 433 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 294 Effective length of database: 1,751,175,118 Effective search space: 514845484692 Effective search space used: 514845484692 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 133 (55.8 bits)