BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0579.0023.p (222 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C1PCI1.1 C1PCI1_BACCO Orotidine 5'-phosphate decarboxylase 211 3e-53 A4INF6.1 A4INF6_GEOTN 3-hexulose-6-phosphate synthase(D-arabino-... 194 5e-48 B4BJY6.1 B4BJY6_9BACI Orotidine 5'-phosphate decarboxylase 194 5e-48 Q97M04.1 Q97M04_CLOAB 3-hexulose-6-phosphate synthase (D-arabino... 151 3e-35 A0NI92.1 A0NI92_OENOE 3-hexulose-6-phosphate synthase, D-arabino... 136 1e-30 >C1PCI1.1 C1PCI1_BACCO Orotidine 5'-phosphate decarboxylase Length = 206 Score = 211 bits (538), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 109/201 (54%), Positives = 141/201 (70%), Gaps = 14/201 (6%) Query: 1 MNIQLALDRMSIQEAIDMARLTEPYIDWIEVGTSLIKEFGMASVEAMKREFPHKVIVADV 60 M IQLALDR +IQEAI++A E I+WIEVGTSLIKEFG+ S+ +K FP K +VAD+ Sbjct: 1 MKIQLALDRFTIQEAIEIAAKAEKAIEWIEVGTSLIKEFGVKSIYDIKNRFPDKTVVADI 60 Query: 61 KTFDNAKYEFELCYKAGADVATVMGAAPLVTVDLSMKTARIWDRQVMIDLLHTMPEEQAA 120 KTFDNAKYEFELC++AGAD+ATVMGAAP VT+ + TA +DRQVM+DLL+T +Q Sbjct: 61 KTFDNAKYEFELCFRAGADIATVMGAAPPVTLRTCLDTAGQFDRQVMVDLLNTAAHQQKE 120 Query: 121 LARYWEAVHCLHVSKDQQEGGGSRLAGPGAYGAALDGAPGSAGESPAELRIAAAGGITLE 180 +AR + C H+SKDQQE GG G G S + ++A AGGI+LE Sbjct: 121 IARLENIIVCQHISKDQQEEGGG-------------GTWGRRAASRNQ-QLAVAGGISLE 166 Query: 181 SLPGLMAMKPEVLIVGSAITK 201 +L + A++P+VLI+GSAI+K Sbjct: 167 NLAAVRALQPDVLIIGSAISK 187 >A4INF6.1 A4INF6_GEOTN 3-hexulose-6-phosphate synthase(D-arabino-3-hexulose-6-phosphate ormaldehyde lyase) Length = 215 Score = 194 bits (493), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 99/201 (49%), Positives = 131/201 (65%), Gaps = 11/201 (5%) Query: 1 MNIQLALDRMSIQEAIDMARLTEPYIDWIEVGTSLIKEFGMASVEAMKREFPHKVIVADV 60 M IQLALDRM I +AI + + E YIDWIEVGTSLIKEFG+ S+EA+KR FP K+IVAD Sbjct: 1 MYIQLALDRMDINQAIQITQQVEEYIDWIEVGTSLIKEFGIKSIEAIKRAFPGKMIVADT 60 Query: 61 KTFDNAKYEFELCYKAGADVATVMGAAPLVTVDLSMKTARIWDRQVMIDLLHTMPEEQAA 120 KT DNA YE LC++AGADV TVMG APL+TV+ +K A I ++VMIDLL+T + Sbjct: 61 KTMDNAVYECNLCFEAGADVMTVMGVAPLMTVEACLKEASIRGKKVMIDLLNTNESVRQQ 120 Query: 121 LARYWEAVHCLHVSKDQQEGGGSRLAGPGAYGAALDGAPGSAGESPAELRIAAAGGITLE 180 L +Y EA+ C+HVSKD+QE + + P +A AGGI+ Sbjct: 121 LLQYKEAIFCIHVSKDEQE-----------FAQQHKNFNFAHFHRPTGCNLAVAGGISAA 169 Query: 181 SLPGLMAMKPEVLIVGSAITK 201 ++ + + P ++I+GSAIT+ Sbjct: 170 TMKQIQPLHPSIVIIGSAITR 190 >B4BJY6.1 B4BJY6_9BACI Orotidine 5'-phosphate decarboxylase Length = 215 Score = 194 bits (493), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 99/201 (49%), Positives = 131/201 (65%), Gaps = 11/201 (5%) Query: 1 MNIQLALDRMSIQEAIDMARLTEPYIDWIEVGTSLIKEFGMASVEAMKREFPHKVIVADV 60 M IQLALDRM I +AI + + E YIDWIEVGTSLIKEFG+ S+EA+KR FP K+IVAD Sbjct: 1 MYIQLALDRMDINQAIQITQQVEEYIDWIEVGTSLIKEFGIKSIEAIKRAFPGKMIVADT 60 Query: 61 KTFDNAKYEFELCYKAGADVATVMGAAPLVTVDLSMKTARIWDRQVMIDLLHTMPEEQAA 120 KT DNA YE LC++AGADV TVMG APL+TV+ +K A I ++VMIDLL+T + Sbjct: 61 KTMDNAVYECNLCFEAGADVMTVMGVAPLMTVEACLKEASIRGKKVMIDLLNTNESVRQQ 120 Query: 121 LARYWEAVHCLHVSKDQQEGGGSRLAGPGAYGAALDGAPGSAGESPAELRIAAAGGITLE 180 L +Y EA+ C+HVSKD+QE + + P +A AGGI+ Sbjct: 121 LLQYKEAIFCIHVSKDEQE-----------FAQQHKNFNFAHFHRPTGCNLAVAGGISAA 169 Query: 181 SLPGLMAMKPEVLIVGSAITK 201 ++ + + P ++I+GSAIT+ Sbjct: 170 TMKQIQPLHPSIVIIGSAITR 190 >Q97M04.1 Q97M04_CLOAB 3-hexulose-6-phosphate synthase (D-arabino-3-hexulose-6-phosphate formaldehyde lyase) Length = 208 Score = 151 bits (382), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 80/201 (39%), Positives = 119/201 (59%), Gaps = 12/201 (5%) Query: 1 MNIQLALDRMSIQEAIDMARLTEPYIDWIEVGTSLIKEFGMASVEAMKREFPHKVIVADV 60 M +QLALDRM+I EA + YID IEVGTSLIK++G S+ +M+ EF K+I+AD+ Sbjct: 1 MKVQLALDRMTIDEAKSITEEVYDYIDIIEVGTSLIKDYGKKSISSMRDEFKDKLILADI 60 Query: 61 KTFDNAKYEFELCYKAGADVATVMGAAPLVTVDLSMKTARIWDRQVMIDLLHTMPEEQAA 120 KT D +YEF+ Y+AGAD+ATVMG +P T+++ K ++ + + +MIDL+ T + Sbjct: 61 KTCDEGEYEFKAAYEAGADIATVMGTSPFETIEICYKVSKEYKKHMMIDLMETDDRKIQQ 120 Query: 121 LARYWEAVHCLHVSKDQQEGGGSRLAGPGAYGAALDGAPGSAGESPAELRIAAAGGITLE 180 L +A+ LH+ KD + + LD RIA GGI+ + Sbjct: 121 LKTCEDAILFLHLPKDSEN------------KSLLDMFQSKKQLFKDVKRIAVGGGISEK 168 Query: 181 SLPGLMAMKPEVLIVGSAITK 201 +PG+ + PE+++VGS ITK Sbjct: 169 VMPGITLINPEIVVVGSFITK 189 >A0NI92.1 A0NI92_OENOE 3-hexulose-6-phosphate synthase, D-arabino-3-hexulose-6-phosphate formaldehyde lyase Length = 207 Score = 136 bits (342), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 76/201 (37%), Positives = 115/201 (57%), Gaps = 12/201 (5%) Query: 1 MNIQLALDRMSIQEAIDMARLTEPYIDWIEVGTSLIKEFGMASVEAMKREFPHKVIVADV 60 M +Q A+DR S+QE I++A+ +P +D +E+GTS IK+FG A+++ +K EF H I+ D+ Sbjct: 1 MKLQAAIDRRSLQETIELAKKLDPIVDIVEIGTSAIKDFGFAALKNLKSEFHHAEILFDI 60 Query: 61 KTFDNAKYEFELCYKAGADVATVMGAAPLVTVDLSMKTARIWDRQVMIDLLHTMPEEQAA 120 KT D YEF+ YKAGAD+ TVMGA L T++ + + ++ + R + IDL+ ++ A Sbjct: 61 KTNDEGDYEFKSGYKAGADILTVMGAMDLSTLEKTYQVSQDFHRDMFIDLMAMKNQQIAP 120 Query: 121 LARYWEAVHCLHVSKDQQEGGGSRLAGPGAYGAALDGAPGSAGESPAELRIAAAGGITLE 180 L ++ +A+ LH S D A D P+ RIA AGGI L+ Sbjct: 121 LMKFNQAIFGLHHSHDSSSNFD-----------ATDSVAKFHETYPSASRIAVAGGINLK 169 Query: 181 SLPGLMAMK-PEVLIVGSAIT 200 S L E++IVG AI+ Sbjct: 170 SAAALSKQNLTEIIIVGGAIS 190 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.134 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,221,523,190 Number of extensions: 48894103 Number of successful extensions: 171313 Number of sequences better than 1.0e-05: 450 Number of HSP's gapped: 170968 Number of HSP's successfully gapped: 450 Length of query: 222 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 91 Effective length of database: 1,826,543,238 Effective search space: 166215434658 Effective search space used: 166215434658 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)