BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0579.0018.p (284 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C2W8Z4.1 C2W8Z4_BACCE ABC transporter ATP-binding protein 202 2e-50 C3B4J1.1 C3B4J1_BACMY ABC transporter ATP-binding protein 197 1e-48 Q6HHJ6.1 Q6HHJ6_BACHK ABC transporter ATP-binding protein 196 2e-48 B7JSQ9.1 B7JSQ9_BACC0 Putative ABC transporter, ATP-binding protein 196 2e-48 C3GK68.1 C3GK68_BACTU ABC transporter ATP-binding protein 196 2e-48 >C2W8Z4.1 C2W8Z4_BACCE ABC transporter ATP-binding protein Length = 257 Score = 202 bits (515), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 98/249 (39%), Positives = 155/249 (62%), Gaps = 1/249 (0%) Query: 35 GAGKTTLLNTIAGGITADSGTIEVSGKKLGRGEPP-KDFCYVRDQYRHFGSARVMETLQL 93 GAGKTTLL+ +AG I A G++ + G+ + ++ C+V+ + ++ S +V E +L Sbjct: 6 GAGKTTLLHLLAGQIVASEGSVSIFGENVYENSHALQNICFVKVKEENYMSYKVKEIFKL 65 Query: 94 AASFHPRWDWTYARELLNLFLIDPDKKIRQLSSGTRSLIGNIIGLASRAQLTLYDEPVLG 153 F+ WD +A EL F +D ++K +LS G ++++G I GLASRA +T++DEP G Sbjct: 66 CNLFYKNWDGMFAEELAVKFQLDMNQKYHRLSHGMQTVVGIIKGLASRAPITIFDEPTTG 125 Query: 154 LDVLMRERFYKTVLEDYANHPRTILLSTHLIDEIAPIAEKIFILESGSLLLQDDMEQIRM 213 LD RE FY +LEDY +HPRTI+LSTHL++E+A I E + IL+ G +++Q +E Sbjct: 126 LDAAHRELFYNVLLEDYGDHPRTIILSTHLVEEVAHIVEDVLILKDGQVIVQSAVEDFLQ 185 Query: 214 SAYLVRGNSETVFSFMAGKRVLYHEAYGRGTLAAIYEKLDDRDMRQAREQDISIETLSLQ 273 A+ + G +TV FM K V++ E +G + I+E L + D + + + IE +SLQ Sbjct: 186 QAHCISGRKDTVNEFMINKYVVHREYFGNKGIGVIWEDLCEEDYDYIKSESLEIEGVSLQ 245 Query: 274 KLFLYLIEG 282 KLF+Y+ +G Sbjct: 246 KLFIYITDG 254 >C3B4J1.1 C3B4J1_BACMY ABC transporter ATP-binding protein Length = 287 Score = 197 bits (500), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 94/249 (37%), Positives = 151/249 (60%), Gaps = 1/249 (0%) Query: 35 GAGKTTLLNTIAGGITADSGTIEVSGKKLGRGEPP-KDFCYVRDQYRHFGSARVMETLQL 93 GAGKTTLL+ + G I + G++ + + + ++ C+V+ + + + +V E +L Sbjct: 36 GAGKTTLLHLLTGQIVSSKGSVSIFNENVYENSHALQNICFVKVKEEIYSNYKVKEIFKL 95 Query: 94 AASFHPRWDWTYARELLNLFLIDPDKKIRQLSSGTRSLIGNIIGLASRAQLTLYDEPVLG 153 F+ WD +A EL F ID +KK +LS G ++++G I GLASRA +T++DEP G Sbjct: 96 CNMFYKNWDQKFAEELAVKFQIDVNKKYDKLSHGMQTVVGIIKGLASRAPITIFDEPTTG 155 Query: 154 LDVLMRERFYKTVLEDYANHPRTILLSTHLIDEIAPIAEKIFILESGSLLLQDDMEQIRM 213 LD RE FY +LEDY NHPRTI+LSTHL++E+A + E + IL+ G +++Q +E + Sbjct: 156 LDAAHRELFYSMLLEDYGNHPRTIILSTHLVEEVAHVVEDVLILKEGEVVVQSAVEDLLQ 215 Query: 214 SAYLVRGNSETVFSFMAGKRVLYHEAYGRGTLAAIYEKLDDRDMRQAREQDISIETLSLQ 273 + + G + V FM K V+Y E +G + I+ +L D + +++ IE +SLQ Sbjct: 216 QGHYISGRKDKVDEFMINKNVVYRELFGNKRIGVIWGELSKEDYKYLESEELEIEGVSLQ 275 Query: 274 KLFLYLIEG 282 KLF+Y+ +G Sbjct: 276 KLFIYITDG 284 >Q6HHJ6.1 Q6HHJ6_BACHK ABC transporter ATP-binding protein Length = 290 Score = 196 bits (499), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 96/249 (38%), Positives = 156/249 (62%), Gaps = 1/249 (0%) Query: 35 GAGKTTLLNTIAGGITADSGTIEVSGKKL-GRGEPPKDFCYVRDQYRHFGSARVMETLQL 93 GAGKTTLLN +AG IT+ SG++ + G+ + + ++ C+VR + S +V E ++ Sbjct: 39 GAGKTTLLNLLAGQITSSSGSVSIFGEHVFENSKAMQNICFVRVKEEAHLSFKVKEIFKM 98 Query: 94 AASFHPRWDWTYARELLNLFLIDPDKKIRQLSSGTRSLIGNIIGLASRAQLTLYDEPVLG 153 + F+ WD YA EL N F ++ K +LS G ++++G I GLASRA +T++DEP G Sbjct: 99 CSMFYKNWDGKYAEELANKFQLNMTVKYHKLSHGMQTVVGIIQGLASRAPITIFDEPTTG 158 Query: 154 LDVLMRERFYKTVLEDYANHPRTILLSTHLIDEIAPIAEKIFILESGSLLLQDDMEQIRM 213 LD RE FY +LEDYA +PRTI+LSTHL++E+ + E + I++ G L++Q +E + Sbjct: 159 LDAAHRELFYSLLLEDYAEYPRTIILSTHLVEEVTHVIEDVIIIKEGRLVIQSLVEDLLQ 218 Query: 214 SAYLVRGNSETVFSFMAGKRVLYHEAYGRGTLAAIYEKLDDRDMRQAREQDISIETLSLQ 273 ++ G + V F+ K+VL E YG +A I+E+L + D ++ ++I+ ++LQ Sbjct: 219 QVQIISGQKDKVDEFLINKKVLNREVYGNKGIAVIWEELSNEDYYSLEKEGLAIDRITLQ 278 Query: 274 KLFLYLIEG 282 KLF+++ G Sbjct: 279 KLFIHITGG 287 >B7JSQ9.1 B7JSQ9_BACC0 Putative ABC transporter, ATP-binding protein Length = 290 Score = 196 bits (499), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 96/249 (38%), Positives = 156/249 (62%), Gaps = 1/249 (0%) Query: 35 GAGKTTLLNTIAGGITADSGTIEVSGKKL-GRGEPPKDFCYVRDQYRHFGSARVMETLQL 93 GAGKTTLLN +AG IT+ SG++ + G+ + + ++ C+VR + S +V E ++ Sbjct: 39 GAGKTTLLNLLAGQITSSSGSVSIFGEHVFENSKAMQNICFVRVKEEAHLSFKVKEIFKM 98 Query: 94 AASFHPRWDWTYARELLNLFLIDPDKKIRQLSSGTRSLIGNIIGLASRAQLTLYDEPVLG 153 + F+ WD YA EL N F ++ K +LS G ++++G I GLASRA +T++DEP G Sbjct: 99 CSMFYKNWDGKYAEELANKFQLNMTVKYHKLSHGMQTVVGIIQGLASRAPITIFDEPTTG 158 Query: 154 LDVLMRERFYKTVLEDYANHPRTILLSTHLIDEIAPIAEKIFILESGSLLLQDDMEQIRM 213 LD RE FY +LEDYA +PRTI+LSTHL++E+ + E + I++ G L++Q +E + Sbjct: 159 LDAAHRELFYSLLLEDYAEYPRTIILSTHLVEEVTHVIEDVIIIKEGRLVIQSLVEDLLQ 218 Query: 214 SAYLVRGNSETVFSFMAGKRVLYHEAYGRGTLAAIYEKLDDRDMRQAREQDISIETLSLQ 273 ++ G + V F+ K+VL E YG +A I+E+L + D ++ ++I+ ++LQ Sbjct: 219 QVQIISGQKDKVDEFLINKKVLNREVYGNKGIAVIWEELSNEDYYSLEKEGLAIDRITLQ 278 Query: 274 KLFLYLIEG 282 KLF+++ G Sbjct: 279 KLFIHITGG 287 >C3GK68.1 C3GK68_BACTU ABC transporter ATP-binding protein Length = 265 Score = 196 bits (498), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 96/249 (38%), Positives = 156/249 (62%), Gaps = 1/249 (0%) Query: 35 GAGKTTLLNTIAGGITADSGTIEVSGKKL-GRGEPPKDFCYVRDQYRHFGSARVMETLQL 93 GAGKTTLLN +AG IT+ SG++ + G+ + + ++ C+VR + S +V E ++ Sbjct: 14 GAGKTTLLNLLAGQITSSSGSVSIFGEHVFENSKAMQNICFVRVKEEAHLSFKVKEIFKM 73 Query: 94 AASFHPRWDWTYARELLNLFLIDPDKKIRQLSSGTRSLIGNIIGLASRAQLTLYDEPVLG 153 + F+ WD YA EL N F ++ K +LS G ++++G I GLASRA +T++DEP G Sbjct: 74 CSMFYKNWDGKYAEELANKFQLNMTVKYHKLSHGMQTVVGIIQGLASRAPITIFDEPTTG 133 Query: 154 LDVLMRERFYKTVLEDYANHPRTILLSTHLIDEIAPIAEKIFILESGSLLLQDDMEQIRM 213 LD RE FY +LEDYA +PRTI+LSTHL++E+ + E + I++ G L++Q +E + Sbjct: 134 LDAAHRELFYSLLLEDYAEYPRTIILSTHLVEEVTHVIEDVIIIKEGRLVIQSLVEDLLQ 193 Query: 214 SAYLVRGNSETVFSFMAGKRVLYHEAYGRGTLAAIYEKLDDRDMRQAREQDISIETLSLQ 273 ++ G + V F+ K+VL E YG +A I+E+L + D ++ ++I+ ++LQ Sbjct: 194 QVQIISGQKDKVDEFLINKKVLNREVYGNKGIAVIWEELSNEDYYSLEKEGLAIDRITLQ 253 Query: 274 KLFLYLIEG 282 KLF+++ G Sbjct: 254 KLFIHITGG 262 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.323 0.141 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,585,843,633 Number of extensions: 62652682 Number of successful extensions: 335620 Number of sequences better than 1.0e-05: 9299 Number of HSP's gapped: 342868 Number of HSP's successfully gapped: 9337 Length of query: 284 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 150 Effective length of database: 1,798,280,193 Effective search space: 269742028950 Effective search space used: 269742028950 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 130 (54.7 bits)