BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0579.0017.p
         (126 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1KZG9.1 B1KZG9_CLOBM Transcriptional regulator, GntR family          117   4e-25
C1FKT0.1 C1FKT0_CLOBJ Transcriptional regulator, GntR family          116   7e-25
B1Q7X0.1 B1Q7X0_CLOBO Transcriptional regulator, GntR family          115   9e-25
A7GCP4.1 A7GCP4_CLOBL Transcriptional regulator, GntR family          115   1e-24
B1IJ87.1 B1IJ87_CLOBK Transcriptional regulator, GntR family          115   1e-24

>B1KZG9.1 B1KZG9_CLOBM Transcriptional regulator, GntR family
          Length = 123

 Score =  117 bits (292), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 57/121 (47%), Positives = 85/121 (70%), Gaps = 4/121 (3%)

Query: 1   MTITFEDNLPIFQQVAHIXXXXXXDDILNGTFRVDEQILSVAQFSQLFQINPATVVKGIG 60
           M   F +++PI+QQ+A+       D IL G +  + QI S  + S  ++INPATV KG  
Sbjct: 1   MNFNFNEDIPIYQQIAN----AIEDGILKGIYEEENQIPSTTEISVNYKINPATVGKGFN 56

Query: 61  LLVNEEILYKKRGLGMFVAADAKKKIQLKRRDRFYKELLSDLLNEADKLGLTTEEIIDMI 120
           LLV+EEI+YKKRG+GMFV + AK+K++ KR+++F+   +  LL+EA +LG+T +EI+DMI
Sbjct: 57  LLVSEEIIYKKRGVGMFVCSGAKEKLKEKRKNKFFDSYILSLLDEAKRLGITIDEIMDMI 116

Query: 121 K 121
           K
Sbjct: 117 K 117


>C1FKT0.1 C1FKT0_CLOBJ Transcriptional regulator, GntR family
          Length = 123

 Score =  116 bits (290), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 57/121 (47%), Positives = 85/121 (70%), Gaps = 4/121 (3%)

Query: 1   MTITFEDNLPIFQQVAHIXXXXXXDDILNGTFRVDEQILSVAQFSQLFQINPATVVKGIG 60
           M   F +++PI+QQVA+       D IL G +  + QI S  + S  ++INPATV KG  
Sbjct: 1   MNFNFNEDIPIYQQVAN----AIEDGILKGIYEEETQIPSTTEISVNYKINPATVGKGFN 56

Query: 61  LLVNEEILYKKRGLGMFVAADAKKKIQLKRRDRFYKELLSDLLNEADKLGLTTEEIIDMI 120
           LLV+EEI+YKKRG+GMFV + AK+K++ KR+++F+   +  L++EA +LG+T +EI+DMI
Sbjct: 57  LLVSEEIIYKKRGVGMFVCSGAKEKLKEKRKNKFFDSYILSLVDEAKRLGITIDEIMDMI 116

Query: 121 K 121
           K
Sbjct: 117 K 117


>B1Q7X0.1 B1Q7X0_CLOBO Transcriptional regulator, GntR family
          Length = 123

 Score =  115 bits (289), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 57/121 (47%), Positives = 85/121 (70%), Gaps = 4/121 (3%)

Query: 1   MTITFEDNLPIFQQVAHIXXXXXXDDILNGTFRVDEQILSVAQFSQLFQINPATVVKGIG 60
           M   F +++PI+QQ+A+       D IL G +  + QI S  + S  ++INPATV KG  
Sbjct: 1   MDFNFNEDIPIYQQIAN----AIEDGILKGIYEEETQIPSTTEISVNYKINPATVGKGFN 56

Query: 61  LLVNEEILYKKRGLGMFVAADAKKKIQLKRRDRFYKELLSDLLNEADKLGLTTEEIIDMI 120
           LLV+EEI+YKKRG+GMFV + AK+K++ KR+++F+   +  LL+EA +LG+T +EI+DMI
Sbjct: 57  LLVSEEIIYKKRGVGMFVCSGAKEKLKEKRKNKFFDSYILSLLDEAKRLGITIDEIMDMI 116

Query: 121 K 121
           K
Sbjct: 117 K 117


>A7GCP4.1 A7GCP4_CLOBL Transcriptional regulator, GntR family
          Length = 123

 Score =  115 bits (289), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 57/121 (47%), Positives = 85/121 (70%), Gaps = 4/121 (3%)

Query: 1   MTITFEDNLPIFQQVAHIXXXXXXDDILNGTFRVDEQILSVAQFSQLFQINPATVVKGIG 60
           M   F +++PI+QQ+A+       D IL G +  + QI S  + S  ++INPATV KG  
Sbjct: 1   MDFNFNEDIPIYQQIAN----AIEDGILKGIYEEETQIPSTTEISVNYKINPATVGKGFN 56

Query: 61  LLVNEEILYKKRGLGMFVAADAKKKIQLKRRDRFYKELLSDLLNEADKLGLTTEEIIDMI 120
           LLV+EEI+YKKRG+GMFV + AK+K++ KR+++F+   +  LL+EA +LG+T +EI+DMI
Sbjct: 57  LLVSEEIIYKKRGVGMFVCSGAKEKLKEKRKNKFFDNYILSLLDEAKRLGITIDEIMDMI 116

Query: 121 K 121
           K
Sbjct: 117 K 117


>B1IJ87.1 B1IJ87_CLOBK Transcriptional regulator, GntR family
          Length = 123

 Score =  115 bits (289), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 57/121 (47%), Positives = 85/121 (70%), Gaps = 4/121 (3%)

Query: 1   MTITFEDNLPIFQQVAHIXXXXXXDDILNGTFRVDEQILSVAQFSQLFQINPATVVKGIG 60
           M   F +++PI+QQ+A+       D IL G +  + QI S  + S  ++INPATV KG  
Sbjct: 1   MDFNFNEDIPIYQQIAN----AIEDGILKGIYEEETQIPSTTEISVNYKINPATVGKGFN 56

Query: 61  LLVNEEILYKKRGLGMFVAADAKKKIQLKRRDRFYKELLSDLLNEADKLGLTTEEIIDMI 120
           LLV+EEI+YKKRG+GMFV + AK+K++ KR+++F+   +  LL+EA +LG+T +EI+DMI
Sbjct: 57  LLVSEEIIYKKRGVGMFVCSAAKEKLKEKRKNKFFDSYILSLLDEAKRLGITIDEIMDMI 116

Query: 121 K 121
           K
Sbjct: 117 K 117


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.323    0.141    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 641,204,764
Number of extensions: 23811445
Number of successful extensions: 75287
Number of sequences better than 1.0e-05: 369
Number of HSP's gapped: 75447
Number of HSP's successfully gapped: 369
Length of query: 126
Length of database: 3,060,696,203
Length adjustment: 91
Effective length of query: 35
Effective length of database: 2,203,383,838
Effective search space: 77118434330
Effective search space used: 77118434330
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)