BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0579.0015.p (160 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KAG4.1 B3KAG4_9BACI ABC transporter related 289 5e-77 C0Z600.1 C0Z600_BREBN ABC transporter ATP-binding protein 289 6e-77 Q8CM14.1 Q8CM14_STRMU Putative ABC transporter; ATP-binding protein 235 9e-61 C0CPD9.1 C0CPD9_9FIRM Putative uncharacterized protein 231 1e-59 B6FUL1.1 B6FUL1_9CLOT Putative uncharacterized protein 228 2e-58 >B3KAG4.1 B3KAG4_9BACI ABC transporter related Length = 234 Score = 289 bits (740), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 137/159 (86%), Positives = 149/159 (93%) Query: 2 NEKRLTRYRGEKVGFVFQFYNLIPNLNALENVEFAVEICKDPLDAKDILRKVGLSNRIKN 61 +EKRLT YRGE+VGFVFQFYNLIPNLNALENVEFA E+CK LDA+DIL KVGL++R+KN Sbjct: 76 SEKRLTEYRGEQVGFVFQFYNLIPNLNALENVEFATEVCKHHLDARDILHKVGLTDRLKN 135 Query: 62 FPSQLSGGEQQRVAIARAVAKNPLLLLCDEPTGALDYMTGKSVLKLLEDLNKETKKCVVL 121 FPSQLSGGEQQRVAIARAVAKNP LLLCDEPTGALDY+TGKSVLKLL+DLN+ETK CVVL Sbjct: 136 FPSQLSGGEQQRVAIARAVAKNPALLLCDEPTGALDYVTGKSVLKLLQDLNQETKTCVVL 195 Query: 122 VTHNSAFALMADKVIRVKSGKIESITINENRQSAEGIEW 160 VTHNSA A MADKVIRVKSGKIESITINE++QS EGIEW Sbjct: 196 VTHNSAIAPMADKVIRVKSGKIESITINEHKQSVEGIEW 234 >C0Z600.1 C0Z600_BREBN ABC transporter ATP-binding protein Length = 234 Score = 289 bits (739), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 137/160 (85%), Positives = 150/160 (93%) Query: 1 LNEKRLTRYRGEKVGFVFQFYNLIPNLNALENVEFAVEICKDPLDAKDILRKVGLSNRIK 60 NEK+LT++RGEKVGFVFQFYNLIPNLNALENVEFA E+CK+ LDAK+IL KVGL NR+K Sbjct: 75 FNEKKLTQFRGEKVGFVFQFYNLIPNLNALENVEFATEVCKNHLDAKEILHKVGLQNRMK 134 Query: 61 NFPSQLSGGEQQRVAIARAVAKNPLLLLCDEPTGALDYMTGKSVLKLLEDLNKETKKCVV 120 NFPSQLSGGEQQRVAIARAVAKNPLLLLCDEPTGALDY+TGKSVLKLL+DLNKETKKCVV Sbjct: 135 NFPSQLSGGEQQRVAIARAVAKNPLLLLCDEPTGALDYVTGKSVLKLLQDLNKETKKCVV 194 Query: 121 LVTHNSAFALMADKVIRVKSGKIESITINENRQSAEGIEW 160 LVTHNSA A MADKVI+VKSG IES+TIN+ +QS EGIEW Sbjct: 195 LVTHNSAIAPMADKVIKVKSGMIESLTINQEKQSVEGIEW 234 >Q8CM14.1 Q8CM14_STRMU Putative ABC transporter; ATP-binding protein Length = 233 Score = 235 bits (600), Expect = 9e-61, Method: Compositional matrix adjust. Identities = 109/160 (68%), Positives = 134/160 (83%) Query: 1 LNEKRLTRYRGEKVGFVFQFYNLIPNLNALENVEFAVEICKDPLDAKDILRKVGLSNRIK 60 +EK LT+YR EK+GFVFQFYNLI NLN LENVEFA+E+ + L+ KDIL++VGLS R+K Sbjct: 74 FSEKELTKYRAEKIGFVFQFYNLISNLNTLENVEFAIEVSQKSLNPKDILKRVGLSERLK 133 Query: 61 NFPSQLSGGEQQRVAIARAVAKNPLLLLCDEPTGALDYMTGKSVLKLLEDLNKETKKCVV 120 NFPSQLSGGEQQRV+IARA+AKNPLLLLCDEPTGALDY TGK VL+L+++LN+ TKK VV Sbjct: 134 NFPSQLSGGEQQRVSIARAIAKNPLLLLCDEPTGALDYETGKEVLQLIKELNESTKKSVV 193 Query: 121 LVTHNSAFALMADKVIRVKSGKIESITINENRQSAEGIEW 160 L+THNSA + +ADKVI V+SG+IE I N ++ +EW Sbjct: 194 LITHNSAISKIADKVIHVRSGQIEKIEYNSDKIPVSELEW 233 >C0CPD9.1 C0CPD9_9FIRM Putative uncharacterized protein Length = 244 Score = 231 bits (590), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 105/159 (66%), Positives = 132/159 (83%) Query: 2 NEKRLTRYRGEKVGFVFQFYNLIPNLNALENVEFAVEICKDPLDAKDILRKVGLSNRIKN 61 N ++LT+YR E +GFVFQFYNL+PNL ALENVE A++ICKDPLDA+ +LR+VGL R+KN Sbjct: 86 NSRQLTQYRREDIGFVFQFYNLVPNLTALENVELALQICKDPLDARQVLREVGLRERMKN 145 Query: 62 FPSQLSGGEQQRVAIARAVAKNPLLLLCDEPTGALDYMTGKSVLKLLEDLNKETKKCVVL 121 FP+QLSGGEQQRV+IARA+AKNP LLLCDEPTGALDY TGK++LKLL+D+ +E V++ Sbjct: 146 FPAQLSGGEQQRVSIARALAKNPKLLLCDEPTGALDYQTGKAILKLLQDMCRERGMTVIV 205 Query: 122 VTHNSAFALMADKVIRVKSGKIESITINENRQSAEGIEW 160 +THNSA MADKVIR+K+G + S+ +NE E IEW Sbjct: 206 ITHNSALTPMADKVIRIKNGTVSSMELNEKPIPVENIEW 244 >B6FUL1.1 B6FUL1_9CLOT Putative uncharacterized protein Length = 234 Score = 228 bits (580), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 105/159 (66%), Positives = 129/159 (81%) Query: 2 NEKRLTRYRGEKVGFVFQFYNLIPNLNALENVEFAVEICKDPLDAKDILRKVGLSNRIKN 61 N K+LT YR + +GFVFQFYNL+PNL ALENVE A++ICKDPLDA +L VGL R N Sbjct: 76 NTKQLTAYRRDDIGFVFQFYNLVPNLTALENVELALQICKDPLDAMAVLEDVGLGERAAN 135 Query: 62 FPSQLSGGEQQRVAIARAVAKNPLLLLCDEPTGALDYMTGKSVLKLLEDLNKETKKCVVL 121 FP+QLSGGEQQRV+IARA+AKNP LLLCDEPTGALDY TGK++LKLL+D ++ V+L Sbjct: 136 FPAQLSGGEQQRVSIARALAKNPKLLLCDEPTGALDYNTGKAILKLLQDTCRKKGMTVIL 195 Query: 122 VTHNSAFALMADKVIRVKSGKIESITINENRQSAEGIEW 160 +THNSA A MAD+VI++K+GK+ +T+NEN S E IEW Sbjct: 196 ITHNSAIAPMADRVIKIKNGKVSKVTLNENPISVETIEW 234 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.135 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 857,781,092 Number of extensions: 31318137 Number of successful extensions: 252647 Number of sequences better than 1.0e-05: 60178 Number of HSP's gapped: 225849 Number of HSP's successfully gapped: 62807 Length of query: 160 Length of database: 3,060,696,203 Length adjustment: 121 Effective length of query: 39 Effective length of database: 1,920,753,388 Effective search space: 74909382132 Effective search space used: 74909382132 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 125 (52.8 bits)